The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	298735	307208	2864344		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|298735_299302_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|299304_300333_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|300325_301810_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|301788_303978_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|303970_304642_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|304643_304907_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|304906_305611_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|305614_306739_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|306725_307208_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 2
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	327194	374778	2864344	bacteriocin,protease	Enterococcus_phage(20.0%)	48	NA	NA
WP_001088780.1|327194_328376_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|328413_328743_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|328981_329803_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150195.1|329795_330599_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|330585_332259_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190626.1|332245_333607_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|333788_334727_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620953.1|334778_335330_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|335494_335710_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_001790177.1|335773_335905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|335950_336910_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|337386_337743_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719184.1|337831_339313_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410720.1|339318_339606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795544.1|339884_340175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571178.1|340262_340904_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_000668623.1|340900_341221_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870806.1|341223_343188_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001790097.1|343231_343504_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|343513_343615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|344531_345134_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|345148_345325_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|345523_346510_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|346590_346809_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|347018_347588_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414177.1|348074_349586_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021864.1|349724_351083_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_076035548.1|351099_353424_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|353642_354446_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049959.1|354747_356310_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_001795833.1|356309_356570_-	YueH family protein	NA	NA	NA	NA	NA
WP_000340118.1|356553_358035_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|358467_359643_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001154222.1|359620_360811_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600392.1|360923_361433_-	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001288681.1|361626_362385_-	esterase family protein	NA	NA	NA	NA	NA
WP_000570699.1|362526_364095_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000933105.1|364436_365522_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000933195.1|365716_366487_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000395153.1|366764_368609_-	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000062417.1|368618_370004_-	magnesium transporter	NA	NA	NA	NA	NA
WP_000669939.1|370024_370879_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001270834.1|370875_371685_-	NAD kinase	NA	NA	NA	NA	NA
WP_001077683.1|371701_372337_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001242102.1|372353_372701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|372886_373480_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_000214075.1|373583_373949_+	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000896697.1|373971_374778_+|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
>prophage 3
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	552052	566783	2864344		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|552052_552814_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|552810_553767_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|553753_554725_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|554763_554919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|555432_556404_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|556521_558627_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|558589_558988_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|559788_560655_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|560674_561175_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193752.1|561515_563021_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|563098_563200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|563290_564208_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197273.1|564831_565374_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|565724_566783_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 4
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	578755	586575	2864344		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|578755_579907_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|579890_580484_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|580834_581503_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|581504_581924_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|581927_582641_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|582739_583324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|583603_584044_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|584385_584859_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|584833_585520_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|585519_586575_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 5
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	2101443	2189089	2864344	holin,portal,terminase,capsid,protease,integrase,tail,head	Staphylococcus_phage(92.21%)	111	2115310:2115327	2140241:2140258
WP_000197635.1|2101443_2102187_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|2102361_2102646_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240645.1|2102721_2104338_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000128898.1|2105039_2105252_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_001293058.1|2105248_2105839_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_001797573.1|2106156_2106534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022887.1|2106698_2107142_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_050902364.1|2107994_2109302_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000825510.1|2109462_2110374_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000812010.1|2110435_2111281_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206639.1|2111652_2112876_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791407.1|2113310_2114366_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595324.1|2114387_2115404_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2115310:2115327	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000857199.1|2116522_2117560_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_001549185.1|2117750_2118464_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000705246.1|2118541_2118724_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|2118927_2119269_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2119274_2120207_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2120222_2120936_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_031826358.1|2120898_2121072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854072.1|2121068_2121332_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2121347_2121563_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000180411.1|2121551_2121881_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001148642.1|2121931_2122684_+	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_001001356.1|2122699_2122876_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_000549548.1|2122872_2123103_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001120199.1|2123161_2123482_+	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_001285960.1|2123478_2123640_+	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001549178.1|2123734_2123995_+	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_000291513.1|2124034_2124295_+	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001205732.1|2124303_2124567_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700561.1|2124575_2126519_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_000138475.1|2126520_2127441_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|2127521_2128139_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934753.1|2128139_2128610_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_000148333.1|2128639_2129533_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338530.1|2129539_2129758_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401977.1|2129766_2130171_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000101288.1|2130183_2130552_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131383.1|2130555_2130798_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_001549172.1|2130806_2131178_+	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_001065101.1|2131170_2131407_+	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_000700108.1|2131396_2131639_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000181819.1|2131631_2132165_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_001282074.1|2132201_2132447_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2132443_2132650_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2132646_2133033_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2133029_2133179_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265043.1|2133178_2133379_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|2133406_2133823_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2134054_2134354_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|2134483_2134828_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|2134824_2136486_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|2136501_2137689_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2137672_2138410_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|2138433_2139579_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|2139598_2139883_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|2139872_2140157_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|2140140_2140503_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2140241:2140258	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000114229.1|2140499_2140904_+	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000565500.1|2140900_2141305_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000260578.1|2141308_2141953_+|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_094969769.1|2141979_2142219_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_001096354.1|2142268_2142619_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_001551779.1|2142863_2147393_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_000567394.1|2147389_2148874_+|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_000582165.1|2148889_2152675_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|2152664_2152817_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|2152863_2153151_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|2153208_2153505_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|2153654_2153831_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|2153883_2153991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|2154042_2154297_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|2154308_2155064_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|2155254_2155746_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000727649.1|2156825_2157275_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|2157959_2158310_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2158362_2158623_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2158933_2159113_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001549158.1|2160070_2161825_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001068542.1|2162449_2163736_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|2163935_2164034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|2164276_2164453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|2164716_2165097_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|2165093_2165990_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|2165990_2166671_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|2166667_2167540_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|2167539_2168280_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|2168345_2168909_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|2169029_2169554_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|2169613_2170171_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|2170167_2171010_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188077.1|2171066_2172107_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|2172557_2172731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|2173303_2173705_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|2173974_2175003_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021214.1|2175122_2176502_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001790680.1|2176553_2176727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|2176921_2177851_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|2177903_2178464_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275730.1|2178835_2179933_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000323167.1|2180137_2181700_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|2181710_2181818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177817.1|2181889_2182684_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|2182703_2183780_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284431.1|2183963_2185433_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040873.1|2185425_2186247_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000011538.1|2186517_2187120_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|2187100_2187274_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|2187565_2187892_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827748.1|2187922_2189089_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 6
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	2249060	2350275	2864344	tRNA,protease,transposase	Staphylococcus_phage(89.29%)	98	NA	NA
WP_001549130.1|2249060_2250422_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|2250914_2251976_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|2252233_2253691_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000590809.1|2253683_2254406_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000379978.1|2254556_2255684_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|2255688_2256159_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|2256317_2256917_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2256941_2257094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|2257870_2258266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|2258461_2259847_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2260309_2261131_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|2261293_2262406_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2262427_2263051_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2263406_2263871_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992527.1|2264049_2265174_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2265242_2265587_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|2265969_2266068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|2266358_2267555_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584648.1|2267544_2270481_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|2270477_2271419_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|2271539_2272502_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2272706_2273264_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2273996_2274362_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|2274503_2274926_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216878.1|2275059_2275800_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001245769.1|2275792_2277016_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|2277139_2277643_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|2277805_2277916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2277905_2278943_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2279000_2279924_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167538.1|2279947_2281348_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|2281670_2282225_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000226886.1|2285481_2286021_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000473596.1|2286819_2287755_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|2287756_2288740_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|2288981_2289125_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|2289861_2290005_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|2290069_2293063_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|2293055_2294300_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|2294315_2294834_+	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|2294843_2296217_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|2296239_2296932_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_050902366.1|2296928_2297690_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	99.6	2.8e-130
WP_000586140.1|2297686_2298385_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|2298858_2299425_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001039435.1|2300388_2301096_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001039447.1|2301220_2301943_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|2302000_2302720_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038704.1|2302840_2303560_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|2303508_2303616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|2303717_2304434_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|2304584_2305304_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|2305368_2305503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050902367.1|2305666_2307223_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	6.8e-288
WP_000072576.1|2307215_2308415_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000831218.1|2309264_2313377_+	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_001037045.1|2313897_2314275_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|2314622_2314724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|2314846_2314942_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|2315144_2315288_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|2315891_2316275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|2316285_2316462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|2316463_2316649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|2316762_2317404_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|2317621_2318173_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|2318270_2318615_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000070653.1|2319357_2320353_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|2320433_2321084_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|2321386_2321842_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|2322000_2323479_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|2323483_2324485_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|2324481_2324739_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|2324804_2325278_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|2325282_2326029_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000639100.1|2326487_2326889_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	5.7e-13
WP_000109906.1|2327024_2328617_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2328987_2330181_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|2330305_2331214_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|2331425_2332259_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000623471.1|2334354_2334708_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200541.1|2334704_2335070_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000091445.1|2335325_2335628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096459.1|2335887_2336601_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|2337040_2337676_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|2337971_2338415_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|2338401_2338845_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|2338957_2339428_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|2339626_2339851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2340126_2340981_+	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|2341275_2341671_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989121.1|2341688_2342981_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|2342980_2343295_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261677.1|2343817_2345320_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000077344.1|2345800_2346844_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_000493892.1|2346850_2347483_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_050902368.1|2347493_2348675_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	1.9e-226
WP_001008551.1|2348687_2349152_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|2349273_2350275_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 7
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	2353435	2366164	2864344	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|2353435_2353999_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|2353995_2354949_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|2355058_2356240_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001549041.1|2356527_2358945_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000836465.1|2358966_2359278_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050548.1|2359603_2366164_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 8
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	2491622	2500665	2864344	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|2491622_2492627_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|2492628_2493654_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|2493676_2494816_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|2494834_2495095_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|2495369_2497649_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|2497851_2500125_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|2500146_2500665_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 9
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	2569802	2578114	2864344	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|2569802_2571602_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|2571825_2572932_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|2573062_2573740_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|2573742_2574843_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|2574956_2576303_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_050902374.1|2576312_2577203_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.8	9.6e-29
WP_001213908.1|2577328_2578114_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 10
NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2864344	2638932	2721183	2864344	holin,tRNA,portal,terminase,capsid,protease,plate,integrase,tail,head	Staphylococcus_phage(85.33%)	103	2638908:2638928	2684801:2684821
2638908:2638928	attL	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000264751.1|2638932_2640138_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191466.1|2640263_2640878_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001795334.1|2640874_2641021_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000449655.1|2641110_2641506_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755722.1|2641534_2641969_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000525001.1|2641986_2642448_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000429766.1|2642460_2642790_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|2642950_2643142_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001001356.1|2643225_2643402_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001548903.1|2643398_2643638_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001036299.1|2643684_2643900_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|2643924_2644188_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000829612.1|2644453_2644771_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_000163431.1|2644763_2645066_+	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000291481.1|2645070_2645331_+	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000985979.1|2645344_2645707_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000762552.1|2645703_2646870_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000645048.1|2646895_2647453_+	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_001801657.1|2647520_2649473_+	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|2649485_2649671_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|2649670_2650072_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022728.1|2650071_2650329_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|2650331_2650532_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000132194.1|2650546_2650789_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_001065039.1|2650803_2651052_+	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000185671.1|2651044_2651581_+	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_000195794.1|2651617_2651824_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|2651820_2652024_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000608275.1|2652016_2652253_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000592202.1|2652245_2652632_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000595263.1|2652628_2652781_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000265252.1|2652848_2653049_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000884870.1|2653336_2655784_+	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001801650.1|2655892_2655991_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_001548892.1|2656124_2656415_+	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801648.1|2656395_2657763_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_000528512.1|2657775_2658213_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_000160686.1|2658369_2658684_+	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000778933.1|2658810_2659116_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153540.1|2659105_2660797_+|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_001100664.1|2660801_2662040_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|2662023_2662797_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|2662808_2663972_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|2664040_2664319_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|2664330_2664663_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|2664659_2665061_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|2665061_2665457_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|2665491_2666133_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|2666224_2666680_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|2666737_2667088_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|2667129_2667288_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003408.1|2667301_2673502_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_001190533.1|2673501_2674326_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|2674334_2675918_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|2675917_2676208_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|2676223_2678134_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|2678133_2679600_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|2679599_2679989_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|2679981_2680146_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|2680191_2680491_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|2680626_2680929_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909220.1|2680939_2682394_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000239545.1|2682783_2683722_+	beta-channel forming cytolysin	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_024937002.1|2683717_2684701_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000470336.1|2684949_2685135_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
2684801:2684821	attR	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000476873.1|2685225_2686143_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000472936.1|2686199_2687138_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|2687130_2687337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|2687351_2688266_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001789947.1|2688464_2688584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001186912.1|2688862_2689408_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|2689513_2689762_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|2689869_2690823_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902119.1|2690812_2692192_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_000069282.1|2692344_2693805_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_001789943.1|2693929_2694046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|2694206_2695193_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681756.1|2695307_2696276_-	asparaginase	NA	NA	NA	NA	NA
WP_000644391.1|2696352_2697012_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001789945.1|2697042_2697159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001789944.1|2697275_2697467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133954.1|2697723_2698899_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165536.1|2699120_2700431_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161738.1|2700447_2701446_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|2701616_2701889_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450553.1|2702319_2702892_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|2702894_2703620_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096471.1|2703621_2704581_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|2704672_2705122_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|2705330_2705531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|2705916_2707083_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000776323.1|2707108_2708173_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245895.1|2708182_2709481_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389524.1|2709487_2710732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000004947.1|2710745_2711321_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000152734.1|2711310_2711898_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|2711969_2712650_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839926.1|2712986_2713304_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000690027.1|2713544_2714687_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000361544.1|2714691_2715894_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000049919.1|2715880_2716852_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|2716875_2719569_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858789.1|2719890_2721183_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
>prophage 1
NZ_CP016860	Staphylococcus aureus subsp. aureus strain 1969.N plasmid p1969.Nb, complete sequence	61505	22898	31318	61505	transposase	Staphylococcus_phage(71.43%)	9	NA	NA
WP_042856805.1|22898_23123_-	DUF4314 domain-containing protein	NA	A0A127AWR5	Bacillus_phage	52.0	5.8e-07
WP_042856804.1|23430_23676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050902402.1|24197_24377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105987.1|25023_25698_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_000282655.1|25811_26768_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	100.0	1.1e-190
WP_000175735.1|26809_27295_+	trimethoprim-resistant dihydrofolate reductase DfrC	NA	A0A0N9S8H6	Staphylococcus_phage	100.0	1.1e-90
WP_047499649.1|27758_28433_-|transposase	IS6 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.1	3.4e-127
WP_002456737.1|28619_29315_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	39.4	3.0e-38
WP_050902403.1|29851_31318_+	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.9	3.9e-67
