The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	359419	367892	2748803		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238670.1|359419_359986_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
WP_000030811.1|359988_361017_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_031871549.1|361009_362494_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	4.2e-45
WP_064127982.1|362472_364662_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000666794.1|364654_365326_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|365327_365591_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|365590_366295_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|366298_367423_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|367409_367892_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 2
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	383187	413782	2748803	protease,transposase,bacteriocin	Staphylococcus_phage(25.0%)	33	NA	NA
WP_025173837.1|383187_384507_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_020978115.1|384629_384740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000278015.1|384766_385186_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000202434.1|385338_386349_+	acyltransferase family protein	NA	NA	NA	NA	NA
WP_000777579.1|386544_387699_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000676528.1|388226_389237_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
WP_001089096.1|389318_390500_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|390537_390867_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|391105_391927_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150199.1|391919_392723_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|392709_394383_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_031871548.1|394369_395731_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|395912_396851_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620950.1|396902_397454_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|397618_397834_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_020978112.1|397897_398029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081346.1|398074_399034_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|399521_399878_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792676.1|399966_400104_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795544.1|400244_400535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571178.1|400622_401264_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_000668623.1|401260_401581_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870806.1|401583_403548_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001790097.1|403591_403864_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|403873_403975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|404891_405494_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|405508_405685_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|405881_406868_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|406948_407167_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|407376_407946_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414177.1|408432_409944_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021864.1|410082_411441_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000455278.1|411457_413782_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
>prophage 3
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	624944	639298	2748803		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616840.1|624944_625706_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|625702_626659_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|626645_627617_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|627655_627811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|627991_628963_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|629080_631186_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|631148_631547_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068487.1|632360_633227_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930012.1|633246_633747_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|634087_635593_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|635670_635772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429008.1|635861_636779_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.8e-07
WP_000197271.1|637402_637945_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|638239_639298_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 4
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	651269	659089	2748803		Pandoravirus(16.67%)	10	NA	NA
WP_001217801.1|651269_652421_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	7.8e-23
WP_000604514.1|652404_652998_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|653348_654017_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941340.1|654018_654438_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|654441_655155_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|655253_655838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093557.1|656117_656558_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|656899_657373_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|657347_658034_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|658033_659089_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 5
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	2097286	2169876	2748803	holin,protease,integrase,terminase,capsid,transposase,head,portal,tail	Staphylococcus_phage(92.86%)	93	2109252:2109269	2176540:2176557
WP_000197643.1|2097286_2098030_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|2098206_2098491_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|2098566_2100183_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_001045085.1|2100716_2102024_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000825510.1|2102184_2103096_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000812008.1|2103157_2104003_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206621.1|2104374_2105598_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791419.1|2106033_2107086_+	bi-component leukocidin LukGH subunit H	NA	A0A2I6PER8	Staphylococcus_phage	31.8	2.4e-34
WP_000595326.1|2107107_2108124_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	5.1e-26
WP_000857191.1|2109242_2110280_-|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
2109252:2109269	attL	TTCTAAAATTTTAGTTGT	NA	NA	NA	NA
WP_000825947.1|2110338_2110803_-	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000705248.1|2110902_2111085_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|2111288_2111630_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2111635_2112568_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2112583_2113297_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|2113259_2113433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854073.1|2113429_2113693_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	98.9	2.1e-40
WP_001148862.1|2113708_2113906_+	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_000762519.1|2113892_2114273_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001120201.1|2114327_2114651_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2114647_2114809_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2114903_2115206_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2115210_2115471_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2115479_2115743_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|2115751_2117695_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_000138474.1|2117696_2118617_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	1.5e-165
WP_073394849.1|2118697_2119315_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000610648.1|2119315_2119786_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_000148321.1|2119815_2120709_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000338530.1|2120715_2120934_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|2120942_2121347_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000101288.1|2121359_2121728_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131370.1|2121731_2121974_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_001065097.1|2121988_2122243_+	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000714403.1|2122229_2122400_+	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
WP_001066447.1|2122392_2122929_+	dUTP diphosphatase	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001282074.1|2122965_2123211_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2123207_2123414_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2123410_2123797_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2123793_2123943_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001622114.1|2123942_2124143_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000590122.1|2124170_2124587_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2124818_2125118_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|2125249_2125594_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_064128007.1|2125590_2127252_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000025274.1|2127267_2128455_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2128438_2129176_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|2129199_2130345_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238237.1|2130364_2130625_+	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_000150936.1|2130637_2130922_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|2130905_2131268_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114227.1|2131264_2131669_+	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000565498.1|2131665_2132073_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268733.1|2132073_2132718_+|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_071621395.1|2132759_2132984_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|2133033_2133384_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_001549167.1|2133434_2133572_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_029549327.1|2133628_2138158_+|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.7	0.0e+00
WP_000567408.1|2138154_2139639_+|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_000582165.1|2139654_2143440_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|2143429_2143582_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|2143628_2143916_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|2143973_2144270_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|2144419_2144596_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|2144648_2144756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|2144807_2145062_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|2145073_2145829_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|2146019_2146511_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000727649.1|2147590_2148040_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|2148723_2149074_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2149126_2149387_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2149697_2149877_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_103672651.1|2150834_2152268_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001792929.1|2152278_2152569_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068523.1|2152892_2154179_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|2154378_2154477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|2154719_2154896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|2155154_2155535_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991301.1|2155531_2156428_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645733.1|2156428_2157109_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|2157105_2157978_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|2157977_2158718_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|2158783_2159347_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|2159467_2159992_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|2160051_2160609_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|2160605_2161448_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188043.1|2161504_2162545_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|2162995_2163169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000706211.1|2163714_2164827_+|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.0	8.7e-11
WP_000026854.1|2164829_2166893_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000514485.1|2166901_2167267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000612780.1|2167295_2167706_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.4e-30
WP_049308183.1|2168196_2169876_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.4	1.9e-243
2176540:2176557	attR	ACAACTAAAATTTTAGAA	NA	NA	NA	NA
>prophage 6
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	2252601	2306235	2748803	protease,tRNA,transposase	Staphylococcus_phage(90.0%)	54	NA	NA
WP_029160281.1|2252601_2253729_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|2253733_2254204_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251229.1|2254361_2254961_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2254985_2255138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|2255971_2256367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116231.1|2256562_2257948_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2258400_2259222_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437968.1|2259384_2260497_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2260518_2261142_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2261497_2261962_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992523.1|2262140_2263265_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2263333_2263678_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|2264170_2264269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238230.1|2264559_2265756_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584638.1|2265745_2268682_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|2268678_2269620_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782127.1|2269740_2270703_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2270907_2271465_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2272197_2272563_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|2272704_2273127_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216873.1|2273260_2274001_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	2.0e-24
WP_000551840.1|2273993_2275217_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|2275340_2275844_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|2276006_2276117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2276106_2277144_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2277201_2278125_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167545.1|2278148_2279549_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|2279869_2280424_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_129409671.1|2281774_2282557_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.4e-31
WP_000821658.1|2282837_2283557_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_000713847.1|2283591_2284320_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_000764689.1|2284473_2285244_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.2	1.4e-44
WP_001236364.1|2285282_2286038_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.0	1.0e-39
WP_000736710.1|2286320_2287097_+	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_000848315.1|2287648_2288425_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000617704.1|2288445_2288682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001253432.1|2288759_2289254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792814.1|2289781_2289910_-|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	66.7	6.6e-08
WP_000209099.1|2290087_2290876_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.3e-138
WP_000473596.1|2292239_2293175_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|2293176_2294160_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543854.1|2294530_2295322_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550252.1|2295326_2295800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092759.1|2296747_2297326_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	59.6	1.9e-49
WP_001039432.1|2298289_2298997_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.9	1.6e-127
WP_001039444.1|2299121_2299844_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001038867.1|2299901_2300621_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038706.1|2300741_2301461_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_011447030.1|2301409_2301517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064128030.1|2301618_2302275_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.1	1.3e-118
WP_001038713.1|2302485_2303205_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001791797.1|2303269_2303404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028653.1|2303567_2305124_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	2.6e-287
WP_000072558.1|2305116_2306235_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.1	7.6e-39
>prophage 7
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	2311468	2343435	2748803	protease	Staphylococcus_phage(93.33%)	34	NA	NA
WP_103672653.1|2311468_2312026_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	9.1e-78
WP_000414206.1|2312223_2312796_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	1.6e-24
WP_000627547.1|2312896_2313238_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.9e-55
WP_000669021.1|2313278_2313905_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.3	1.3e-88
WP_000070648.1|2313978_2314974_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.4	9.6e-70
WP_001789021.1|2315054_2315705_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.6	5.2e-56
WP_078258996.1|2316007_2316463_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	4.0e-79
WP_000348363.1|2316621_2318100_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	98.2	2.5e-284
WP_000778537.1|2318104_2319106_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.8	5.1e-188
WP_000718107.1|2319102_2319360_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672015.1|2319425_2319899_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_072384924.1|2319903_2320650_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	100.0	4.4e-144
WP_000109906.1|2320902_2322495_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2322866_2324060_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366163.1|2324184_2325093_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453317.1|2325304_2326138_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000623477.1|2328135_2328489_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.9	1.0e-21
WP_001200542.1|2328485_2328851_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|2329106_2329409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|2329668_2330382_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168907.1|2330821_2331457_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|2331752_2332196_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|2332182_2332626_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|2332738_2333209_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|2333407_2333632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2333907_2334762_+	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|2334848_2336141_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221177.1|2336140_2336455_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_103672654.1|2336977_2338480_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	97.2	3.6e-28
WP_000077358.1|2338960_2340004_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_000493892.1|2340010_2340643_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159022.1|2340653_2341835_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|2341847_2342312_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|2342433_2343435_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 8
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	2483611	2492651	2748803	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|2483611_2484616_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|2484617_2485643_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112049.1|2485665_2486805_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	1.6e-84
WP_001160682.1|2486823_2487084_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|2487358_2489638_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595005.1|2489840_2492111_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.4e-63
WP_000364542.1|2492132_2492651_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 9
NZ_CP016856	Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome	2748803	2560430	2568760	2748803	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217246.1|2560430_2562248_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
WP_001283055.1|2562471_2563578_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624571.1|2563708_2564386_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683933.1|2564388_2565489_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062177.1|2565602_2566949_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924220.1|2566958_2567849_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|2567974_2568760_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
