assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001708465.1_ASM170846v1	NZ_CP015638	Pseudomonas fluorescens strain L111 chromosome, complete genome	1	618737-618867	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,csa3,cas3,WYL	Unclear	GCTGAGAATGGCCGTAATCGCCTGGAAGAGAAAGGCCTGGT	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA,NA	NA|205aa|up_9|NZ_CP015638.1_608209_608824_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	DEDDh|181aa|up_8|NZ_CP015638.1_609004_609547_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|344aa|up_7|NZ_CP015638.1_609655_610687_+	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	NA|338aa|up_6|NZ_CP015638.1_610944_611958_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|100aa|up_5|NZ_CP015638.1_612134_612434_-	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF	NA|263aa|up_4|NZ_CP015638.1_612505_613294_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|296aa|up_3|NZ_CP015638.1_613391_614279_+	pfam00892, EamA, EamA-like transporter family	NA|297aa|up_2|NZ_CP015638.1_614303_615194_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|177aa|up_1|NZ_CP015638.1_615370_615901_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|690aa|up_0|NZ_CP015638.1_616128_618198_-	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]	NA|211aa|down_0|NZ_CP015638.1_619162_619795_+	PRK11202, PRK11202, HTH-type transcriptional repressor FabR	NA|174aa|down_1|NZ_CP015638.1_619800_620322_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|167aa|down_2|NZ_CP015638.1_620658_621159_+	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|225aa|down_3|NZ_CP015638.1_621155_621830_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|205aa|down_4|NZ_CP015638.1_621869_622484_+	cd05540, UreG, urease accessory protein UreG	NA|191aa|down_5|NZ_CP015638.1_622505_623078_+	pfam04955, HupE_UreJ, HupE / UreJ protein	NA|374aa|down_6|NZ_CP015638.1_623249_624371_+	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]	NA|302aa|down_7|NZ_CP015638.1_624429_625335_-	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|256aa|down_8|NZ_CP015638.1_625552_626320_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|239aa|down_9|NZ_CP015638.1_627139_627856_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
GCF_001708465.1_ASM170846v1	NZ_CP015638	Pseudomonas fluorescens strain L111 chromosome, complete genome	2	2267176-2267280	2	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL	Orphan	GTTTTTCGCGAGCAAGCTCGCTCCTACA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA|80aa|up_0|NZ_CP015638.1_2266721_2266961_-,NA	NA|221aa|up_9|NZ_CP015638.1_2259667_2260330_+	smart00796, AHS1, Allophanate hydrolase subunit 1	NA|324aa|up_8|NZ_CP015638.1_2260326_2261298_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|133aa|up_7|NZ_CP015638.1_2261309_2261708_+	COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]	NA|258aa|up_6|NZ_CP015638.1_2261724_2262498_+	PRK12569, PRK12569, hypothetical protein; Provisional	NA|251aa|up_5|NZ_CP015638.1_2262612_2263365_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|234aa|up_4|NZ_CP015638.1_2263475_2264177_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|248aa|up_3|NZ_CP015638.1_2264183_2264927_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|243aa|up_2|NZ_CP015638.1_2264950_2265679_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|278aa|up_1|NZ_CP015638.1_2265736_2266570_+	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|80aa|up_0|NZ_CP015638.1_2266721_2266961_-	NA	NA|356aa|down_0|NZ_CP015638.1_2267360_2268428_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|525aa|down_1|NZ_CP015638.1_2268424_2269999_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|339aa|down_2|NZ_CP015638.1_2270017_2271034_-	cd13543, PBP2_Fbp, Substrate binding domain of ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|379aa|down_3|NZ_CP015638.1_2271501_2272638_-	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]	NA|516aa|down_4|NZ_CP015638.1_2272638_2274186_-	PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional	NA|333aa|down_5|NZ_CP015638.1_2274321_2275320_-	TIGR02634, D-xylose-binding_periplasmic_protein, D-xylose ABC transporter, substrate-binding protein	NA|439aa|down_6|NZ_CP015638.1_2275421_2276738_-	PRK05474, PRK05474, xylose isomerase; Provisional	NA|390aa|down_7|NZ_CP015638.1_2276878_2278048_+	cd01543, PBP1_XylR, ligand-binding domain of DNA transcription repressor specific for xylose (XylR)	NA|238aa|down_8|NZ_CP015638.1_2278044_2278758_-	PRK10188, PRK10188, transcriptional regulator SdiA	NA|195aa|down_9|NZ_CP015638.1_2279097_2279682_+	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001708465.1_ASM170846v1	NZ_CP015638	Pseudomonas fluorescens strain L111 chromosome, complete genome	3	2311821-2311961	3	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL	Orphan	TGTAGGAGCGAGCTTGCTCGCGAAAAACTCACAGGCGCCGCGTTCATTCAGGA	53	1	9	2311874-2311908|2311874-2311908|2311874-2311908|2311874-2311908|2311874-2311908|2311874-2311908|2311874-2311908|2311874-2311908|2311874-2311908	NZ_CP015638.1_141838-141804|NZ_CP015638.1_159625-159659|NZ_CP015638.1_184164-184198|NZ_CP015638.1_220970-221004|NZ_CP015638.1_561956-561922|NZ_CP015638.1_2299105-2299071|NZ_CP015638.1_5476413-5476447|NZ_CP015638.1_6142211-6142177|NZ_CP015638.1_615997-616031	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA|483aa|up_0|NZ_CP015638.1_2310074_2311523_-,NA	NA|256aa|up_9|NZ_CP015638.1_2299227_2299995_-	cd05233, SDR_c, classical (c) SDRs	NA|383aa|up_8|NZ_CP015638.1_2300132_2301281_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|335aa|up_7|NZ_CP015638.1_2301396_2302401_-	cd01540, PBP1_arabinose_binding, periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily	NA|288aa|up_6|NZ_CP015638.1_2302542_2303406_-	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|527aa|up_5|NZ_CP015638.1_2303425_2305006_-	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase	NA|330aa|up_4|NZ_CP015638.1_2305016_2306006_-	COG3802, GguC, Uncharacterized protein conserved in bacteria [Function unknown]	NA|441aa|up_3|NZ_CP015638.1_2306021_2307344_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|579aa|up_2|NZ_CP015638.1_2307537_2309274_+	PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated	NA|241aa|up_1|NZ_CP015638.1_2309322_2310045_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|483aa|up_0|NZ_CP015638.1_2310074_2311523_-	NA	NA|658aa|down_0|NZ_CP015638.1_2312059_2314033_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|339aa|down_1|NZ_CP015638.1_2314218_2315235_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|260aa|down_2|NZ_CP015638.1_2315234_2316014_+	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]	NA|309aa|down_3|NZ_CP015638.1_2316033_2316960_+	cd06301, PBP1_rhizopine_binding-like, periplasmic binding proteins specific to rhizopines	NA|278aa|down_4|NZ_CP015638.1_2317036_2317870_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|412aa|down_5|NZ_CP015638.1_2317914_2319150_-	PRK10213, nepI, purine ribonucleoside efflux pump NepI	NA|321aa|down_6|NZ_CP015638.1_2319250_2320213_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|171aa|down_7|NZ_CP015638.1_2320209_2320722_+	cd10028, UDG-F2_TDG_MUG, Uracil DNA glycosylase family 2, includes thymine DNA glycosylase, mismatch-specific uracil DNA glycosylase and similar proteins	NA|199aa|down_8|NZ_CP015638.1_2320760_2321357_+	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases	NA|375aa|down_9|NZ_CP015638.1_2321889_2323014_-	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain
GCF_001708465.1_ASM170846v1	NZ_CP015638	Pseudomonas fluorescens strain L111 chromosome, complete genome	4	4238268-4238394	4	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL	Orphan	GGGCACTGCATTAGTCGCGAACGTACAGGGAGCAACATGTGGGAGGGG	48	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA,NA	NA|324aa|up_9|NZ_CP015638.1_4227019_4227991_+	cd13671, PBP2_TRAP_SBP_like_3, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|176aa|up_8|NZ_CP015638.1_4228057_4228585_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|427aa|up_7|NZ_CP015638.1_4228586_4229867_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|286aa|up_6|NZ_CP015638.1_4229869_4230727_+	cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB	NA|382aa|up_5|NZ_CP015638.1_4230838_4231984_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|548aa|up_4|NZ_CP015638.1_4231980_4233624_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|493aa|up_3|NZ_CP015638.1_4233902_4235381_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|457aa|up_2|NZ_CP015638.1_4235460_4236831_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|388aa|up_1|NZ_CP015638.1_4236814_4237978_-	cd17814, Fe-ADH-like, iron-containing alcohol dehydrogenases (Fe-ADH)-like	NA|24aa|up_0|NZ_CP015638.1_4238105_4238177_-	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA	NA|507aa|down_0|NZ_CP015638.1_4238495_4240016_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|592aa|down_1|NZ_CP015638.1_4240137_4241913_-	TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase, methanol/ethanol family	NA|311aa|down_2|NZ_CP015638.1_4242048_4242981_-	TIGR04558, beta-lactamase_domain-containing_protein, quinoprotein relay system zinc metallohydrolase 1	NA|254aa|down_3|NZ_CP015638.1_4242997_4243759_-	TIGR04557, hypothetical_protein, quinoprotein dehydrogenase-associated SoxYZ-like carrier	NA|292aa|down_4|NZ_CP015638.1_4243780_4244656_-	smart00062, PBPb, Bacterial periplasmic substrate-binding proteins	NA|154aa|down_5|NZ_CP015638.1_4244659_4245121_-	TIGR04494, cytochrome_c550, cytochrome c-550 PedF	NA|632aa|down_6|NZ_CP015638.1_4245376_4247272_+	TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase, methanol/ethanol family	NA|216aa|down_7|NZ_CP015638.1_4247495_4248143_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|209aa|down_8|NZ_CP015638.1_4248279_4248906_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|421aa|down_9|NZ_CP015638.1_4248902_4250165_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_001708465.1_ASM170846v1	NZ_CP015638	Pseudomonas fluorescens strain L111 chromosome, complete genome	5	5246909-5246985	5	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL	Orphan	GGGCTTGTTGTGGCAAGCGGGCTT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA|82aa|up_7|NZ_CP015638.1_5238612_5238858_-,NA	NA|252aa|up_9|NZ_CP015638.1_5236906_5237662_-	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|211aa|up_8|NZ_CP015638.1_5237856_5238489_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|82aa|up_7|NZ_CP015638.1_5238612_5238858_-	NA	NA|114aa|up_6|NZ_CP015638.1_5238900_5239242_-	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|310aa|up_5|NZ_CP015638.1_5239570_5240500_+	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|490aa|up_4|NZ_CP015638.1_5240562_5242032_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|245aa|up_3|NZ_CP015638.1_5242021_5242756_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|319aa|up_2|NZ_CP015638.1_5242889_5243846_-	PRK00292, glk, glucokinase; Provisional	NA|609aa|up_1|NZ_CP015638.1_5243842_5245669_-	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|334aa|up_0|NZ_CP015638.1_5245890_5246892_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|173aa|down_0|NZ_CP015638.1_5247224_5247743_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|322aa|down_1|NZ_CP015638.1_5247820_5248786_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|855aa|down_2|NZ_CP015638.1_5248902_5251467_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|203aa|down_3|NZ_CP015638.1_5251600_5252209_+	COG3230, HemO, Heme oxygenase [Inorganic ion transport and metabolism]	NA|134aa|down_4|NZ_CP015638.1_5252321_5252723_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|713aa|down_5|NZ_CP015638.1_5252862_5255001_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|188aa|down_6|NZ_CP015638.1_5255126_5255690_-	PRK10828, PRK10828, putative oxidoreductase; Provisional	NA|476aa|down_7|NZ_CP015638.1_5255830_5257258_+	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion]	NA|355aa|down_8|NZ_CP015638.1_5257289_5258354_+	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only]	NA|366aa|down_9|NZ_CP015638.1_5258356_5259454_+	COG3490, COG3490, Uncharacterized protein conserved in bacteria [Function unknown]
