bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	1.3|331921|21|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	90.48	21	2	0	1	21	1189935	1189955	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.046	28.5	1.0	CCGGCGCCTAGACCGGCGTTG	1189935-1189955	CCGGCGCCCAGACCGCCGTTG	2
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	2.10|336936|24|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	91.67	24	2	0	1	24	148607	148584	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.002	33.3	1.0	CCGTTGCCGATGAGCCCGCCGGCG	148584-148607	CGCCGGTGGGCTGATCGGCAACGG	2
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	2.10|336936|24|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	91.67	24	2	0	1	24	1216093	1216070	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.002	33.3	1.0	CCGTTGCCGATGAGCCCGCCGGCG	1216070-1216093	CGCCGCCGGGCTGATCGGCAACGG	2
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	2.10|336936|24|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	91.67	24	2	0	1	24	2426522	2426545	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.002	33.3	1.0	CCGTTGCCGATGAGCCCGCCGGCG	2426522-2426545	CCGTTGCCGATCAGCCCGGCGGCG	2
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	2.10|336936|24|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	91.67	24	2	0	1	24	2692900	2692877	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.002	33.3	1.0	CCGTTGCCGATGAGCCCGCCGGCG	2692877-2692900	CGCCGGCGGGCTCTTCGGCATCGG	2
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	3.5|365110|42|NZ_CP016888|CRISPRCasFinder	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	95.24	42	2	0	1	42	373126	373167	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	2e-11	61.8	1.0	CCGGTGCCCGAGTTGAAGAACCCGATGTTTCCGCTGCCGGAG	373126-373167	CCGGTGCCCGAGTTGAACAACCCGACGTTTCCGCTGCCGGAG	2
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	3.6|365185|33|NZ_CP016888|CRISPRCasFinder	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	93.94	33	2	0	1	33	371941	371973	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	1e-07	47.5	1.0	AGGCTGCCGATCCCGATCTGGCCGTTGCCGGTG	371941-371973	AGGCTGCCGAACCCGATCTGGCCGCTGCCGGTG	2
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	4.1|629694|18|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	94.44	18	1	0	1	18	23824	23841	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.14	26.9	1.0	ACCACGTCGGCGACGACG	23824-23841	ACGACGTCGGCGACGACG	1
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	4.1|629694|18|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	94.44	18	1	0	1	18	1412485	1412502	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.14	26.9	1.0	ACCACGTCGGCGACGACG	1412485-1412502	ACCTCGTCGGCGACGACG	1
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	4.3|629778|18|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	94.44	18	1	0	1	18	972209	972226	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.14	26.9	1.0	ACCACGCCGCCAACGACG	972209-972226	ACCACGCCGCCCACGACG	1
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	7.4|1575891|22|NZ_CP016888|CRISPRCasFinder	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	90.91	22	2	0	1	22	1211138	1211117	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.015	30.1	1.0	GTCGCCGATCAGGCCGGCGGCA	1211117-1211138	TGCCGCCGGGCTGATCGGCAAC	2
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	8.2|2077615|18|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	94.44	18	1	0	1	18	399422	399405	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.14	26.9	1.0	GATCAGCCCGACGGCGTT	399405-399422	AACGCCGACGGGCTGATC	1
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	8.2|2077615|18|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	94.44	18	1	0	1	18	605748	605731	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.14	26.9	1.0	GATCAGCCCGACGGCGTT	605731-605748	AACGCCGACGGGCTGATC	1
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	8.4|2077705|18|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	94.44	18	1	0	1	18	3443966	3443949	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	0.14	26.9	1.0	GATCAGCGTCCCGCCGGT	3443949-3443966	ACCAGCGGGACGCTGATC	1
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	10.31|3118522|41|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	100.00	41	0	0	1	41	1985301	1985261	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	5e-13	66.6	1.0	ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG	1985261-1985301	CTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGT	0
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	11.1|3662735|59|NZ_CP016888|CRISPRCasFinder	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	100.00	59	0	0	1	59	3662798	3662856	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	3e-21	95.1	1.0	CTGTGAGTCGAGTGAGCGGAACGAACGAAGTGAGTGACGGGAACGAGACGAACAATCCG	3662798-3662856	CTGTGAGTCGAGTGAGCGGAACGAACGAAGTGAGTGACGGGAACGAGACGAACAATCCG	0
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	14.8|3976119|36|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	100.00	36	0	0	1	36	3973926	3973961	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	9e-11	58.6	1.0	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	3973926-3973961	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	0
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	14.8|3976119|36|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	100.00	36	0	0	1	36	3974269	3974304	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	9e-11	58.6	1.0	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	3974269-3974304	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	0
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	14.8|3976119|36|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	100.00	36	0	0	1	36	3974619	3974654	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	9e-11	58.6	1.0	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	3974619-3974654	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	0
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	14.8|3976119|36|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	100.00	36	0	0	1	36	3974979	3975014	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	9e-11	58.6	1.0	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	3974979-3975014	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	0
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	14.8|3976119|36|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	100.00	36	0	0	1	36	3975156	3975191	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	9e-11	58.6	1.0	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	3975156-3975191	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	0
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	14.8|3976119|36|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	100.00	36	0	0	1	36	3975508	3975543	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	9e-11	58.6	1.0	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	3975508-3975543	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	0
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	14.8|3976119|36|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	97.22	36	1	0	1	36	3960148	3960183	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	8e-10	55.5	1.0	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	3960148-3960183	TAGCAGCGGCGCCGGCGGCACCAACGGCTCCGGCGG	1
NZ_CP016888	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	14.8|3976119|36|NZ_CP016888|CRT	NZ_CP016888.1	Mycobacterium tuberculosis strain SCAID 252.0 chromosome, complete genome	94.44	36	2	0	1	36	3945114	3945149	331810-332709|336096-337064|364822-365520|629676-629813|690414-690490|1452264-1452449|1575691-1576763|2077534-2077788|2160553-2160772|3117451-3118598|3662705-3662823|3746870-3747446|3857734-3857823|3975517-3977136|4138204-4138292	7e-09	52.3	1.0	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG	3945114-3945149	TAGCAGCGGTGCCGGCGGCACCAACGGCTCTGGTGG	2
