assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001708245.1_ASM170824v1	NZ_CP016813	Klebsiella pneumoniae strain ED2 chromosome, complete genome	1	1064807-1064946	1	CRISPRCasFinder	no	DEDDh	DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	Unclear	CTGCTGCTTCAGTTTTGTAGGCCGGGTAAGGCGCCAGCCGCCAGCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	NA,NA	NA|194aa|up_9|NZ_CP016813.1_1056172_1056754_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_8|NZ_CP016813.1_1056828_1057596_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_7|NZ_CP016813.1_1057566_1058307_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|448aa|up_6|NZ_CP016813.1_1058718_1060062_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|413aa|up_5|NZ_CP016813.1_1060065_1061304_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|265aa|up_4|NZ_CP016813.1_1061296_1062091_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|213aa|up_3|NZ_CP016813.1_1062083_1062722_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_2|NZ_CP016813.1_1062728_1063325_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|408aa|up_1|NZ_CP016813.1_1063337_1064561_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|72aa|up_0|NZ_CP016813.1_1064563_1064779_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_0|NZ_CP016813.1_1065001_1065862_-	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|352aa|down_1|NZ_CP016813.1_1066021_1067077_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_2|NZ_CP016813.1_1067079_1067532_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|486aa|down_3|NZ_CP016813.1_1067574_1069032_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_4|NZ_CP016813.1_1069289_1069748_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_5|NZ_CP016813.1_1069853_1071098_+	PRK05077, frsA, esterase FrsA	NA|133aa|down_6|NZ_CP016813.1_1071155_1071554_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|231aa|down_7|NZ_CP016813.1_1071639_1072332_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|down_8|NZ_CP016813.1_1072377_1073778_-	PRK10197, PRK10197, GABA permease	NA|428aa|down_9|NZ_CP016813.1_1073913_1075197_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase
GCF_001708245.1_ASM170824v1	NZ_CP016813	Klebsiella pneumoniae strain ED2 chromosome, complete genome	2	1392185-1392313	2	CRISPRCasFinder	no		DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	Orphan	GTGCCTGATGGTATCGCCCGGTGGCGCTGCGCTTACCGGGCCT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	NA|40aa|up_7|NZ_CP016813.1_1387106_1387226_-,NA|130aa|up_6|NZ_CP016813.1_1387286_1387676_+,NA|42aa|up_4|NZ_CP016813.1_1388375_1388501_-,NA|46aa|up_3|NZ_CP016813.1_1388463_1388601_+,NA	NA|343aa|up_9|NZ_CP016813.1_1384807_1385836_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|373aa|up_8|NZ_CP016813.1_1385896_1387015_-	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|40aa|up_7|NZ_CP016813.1_1387106_1387226_-	NA	NA|130aa|up_6|NZ_CP016813.1_1387286_1387676_+	NA	NA|152aa|up_5|NZ_CP016813.1_1387855_1388311_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|42aa|up_4|NZ_CP016813.1_1388375_1388501_-	NA	NA|46aa|up_3|NZ_CP016813.1_1388463_1388601_+	NA	NA|393aa|up_2|NZ_CP016813.1_1388816_1389995_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|259aa|up_1|NZ_CP016813.1_1390014_1390791_+	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|318aa|up_0|NZ_CP016813.1_1390919_1391873_+	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|264aa|down_0|NZ_CP016813.1_1393073_1393865_-	pfam17409, MoaF_C, MoaF C-terminal domain	NA|259aa|down_1|NZ_CP016813.1_1393890_1394667_-	cd05233, SDR_c, classical (c) SDRs	NA|578aa|down_2|NZ_CP016813.1_1394754_1396488_-	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|396aa|down_3|NZ_CP016813.1_1396532_1397720_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|228aa|down_4|NZ_CP016813.1_1398145_1398829_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|396aa|down_5|NZ_CP016813.1_1398877_1400065_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|372aa|down_6|NZ_CP016813.1_1400061_1401177_+	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|198aa|down_7|NZ_CP016813.1_1401183_1401777_-	pfam11354, DUF3156, Protein of unknown function (DUF3156)	NA|500aa|down_8|NZ_CP016813.1_1401754_1403254_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|122aa|down_9|NZ_CP016813.1_1403626_1403992_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]
GCF_001708245.1_ASM170824v1	NZ_CP016813	Klebsiella pneumoniae strain ED2 chromosome, complete genome	3	1692277-1692354	3	CRISPRCasFinder	no		DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	Orphan	AAGGCGTCAGCCGCCGCCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	NA,NA|71aa|down_7|NZ_CP016813.1_1698955_1699168_-	NA|362aa|up_9|NZ_CP016813.1_1677333_1678419_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NZ_CP016813.1_1678952_1679384_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NZ_CP016813.1_1679435_1682123_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NZ_CP016813.1_1682396_1683680_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|440aa|up_5|NZ_CP016813.1_1683834_1685154_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NZ_CP016813.1_1685150_1686107_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NZ_CP016813.1_1686168_1686894_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|313aa|up_2|NZ_CP016813.1_1687786_1688725_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NZ_CP016813.1_1688721_1690248_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NZ_CP016813.1_1690346_1691729_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NZ_CP016813.1_1692506_1692983_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NZ_CP016813.1_1693053_1694343_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NZ_CP016813.1_1694556_1695597_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NZ_CP016813.1_1695593_1696751_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NZ_CP016813.1_1696734_1697490_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NZ_CP016813.1_1697482_1698205_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NZ_CP016813.1_1698146_1698869_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|71aa|down_7|NZ_CP016813.1_1698955_1699168_-	NA	NA|674aa|down_8|NZ_CP016813.1_1699579_1701601_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|366aa|down_9|NZ_CP016813.1_1701849_1702947_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB
GCF_001708245.1_ASM170824v1	NZ_CP016813	Klebsiella pneumoniae strain ED2 chromosome, complete genome	4	2698232-2698748	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	5,8,8	8	TypeI-E	DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	NA|79aa|up_3|NZ_CP016813.1_2693729_2693966_+,NA	NA|411aa|up_9|NZ_CP016813.1_2685160_2686393_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_8|NZ_CP016813.1_2686958_2687393_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_7|NZ_CP016813.1_2687509_2688709_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|54aa|up_6|NZ_CP016813.1_2690000_2690162_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_5|NZ_CP016813.1_2690204_2692355_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_4|NZ_CP016813.1_2692602_2693682_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|79aa|up_3|NZ_CP016813.1_2693729_2693966_+	NA	NA|363aa|up_2|NZ_CP016813.1_2693984_2695073_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP016813.1_2695146_2696916_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP016813.1_2696908_2697979_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP016813.1_2699160_2701776_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP016813.1_2701779_2703303_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP016813.1_2703314_2703881_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP016813.1_2703873_2704521_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP016813.1_2704550_2705585_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_5|NZ_CP016813.1_2705597_2706314_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP016813.1_2706313_2707189_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP016813.1_2707166_2707454_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP016813.1_2708438_2709554_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_9|NZ_CP016813.1_2709564_2710248_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_001708245.1_ASM170824v1	NZ_CP016813	Klebsiella pneumoniae strain ED2 chromosome, complete genome	5	2707502-2708201	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTCT,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,29,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	11,11,11	11	TypeI-E	DEDDh,RT,cas3,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	NA,NA	NA|590aa|up_9|NZ_CP016813.1_2695146_2696916_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP016813.1_2696908_2697979_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP016813.1_2699160_2701776_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP016813.1_2701779_2703303_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP016813.1_2703314_2703881_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP016813.1_2703873_2704521_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP016813.1_2704550_2705585_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_2|NZ_CP016813.1_2705597_2706314_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP016813.1_2706313_2707189_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP016813.1_2707166_2707454_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP016813.1_2708438_2709554_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_1|NZ_CP016813.1_2709564_2710248_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP016813.1_2710308_2710680_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|252aa|down_3|NZ_CP016813.1_2711181_2711937_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP016813.1_2711939_2713724_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|447aa|down_5|NZ_CP016813.1_2713734_2715075_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP016813.1_2715158_2715782_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP016813.1_2715778_2716438_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP016813.1_2716487_2717225_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP016813.1_2717221_2717452_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
