assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001708225.1_ASM170822v1	NZ_CP016814	Klebsiella pneumoniae strain ED23 chromosome, complete genome	1	1063363-1063502	1	CRISPRCasFinder	no	DEDDh	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Unclear	CTGCTGCTTCAGTTTTGTAGGCCGGGTAAGGCGCCAGCCGCCAGCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|194aa|up_9|NZ_CP016814.1_1054728_1055310_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_8|NZ_CP016814.1_1055384_1056152_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_7|NZ_CP016814.1_1056122_1056863_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|448aa|up_6|NZ_CP016814.1_1057274_1058618_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|413aa|up_5|NZ_CP016814.1_1058621_1059860_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|265aa|up_4|NZ_CP016814.1_1059852_1060647_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|213aa|up_3|NZ_CP016814.1_1060639_1061278_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_2|NZ_CP016814.1_1061284_1061881_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|408aa|up_1|NZ_CP016814.1_1061893_1063117_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|72aa|up_0|NZ_CP016814.1_1063119_1063335_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_0|NZ_CP016814.1_1063557_1064418_-	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|352aa|down_1|NZ_CP016814.1_1064577_1065633_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_2|NZ_CP016814.1_1065635_1066088_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|486aa|down_3|NZ_CP016814.1_1066130_1067588_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_4|NZ_CP016814.1_1067845_1068304_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_5|NZ_CP016814.1_1068409_1069654_+	PRK05077, frsA, esterase FrsA	NA|133aa|down_6|NZ_CP016814.1_1069711_1070110_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|231aa|down_7|NZ_CP016814.1_1070195_1070888_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|down_8|NZ_CP016814.1_1070933_1072334_-	PRK10197, PRK10197, GABA permease	NA|428aa|down_9|NZ_CP016814.1_1072469_1073753_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase
GCF_001708225.1_ASM170822v1	NZ_CP016814	Klebsiella pneumoniae strain ED23 chromosome, complete genome	2	1389283-1389411	2	CRISPRCasFinder	no		DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	GTGCCTGATGGTATCGCCCGGTGGCGCTGCGCTTACCGGGCCT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA|130aa|up_6|NZ_CP016814.1_1384384_1384774_+,NA|42aa|up_4|NZ_CP016814.1_1385473_1385599_-,NA|46aa|up_3|NZ_CP016814.1_1385561_1385699_+,NA	NA|266aa|up_9|NZ_CP016814.1_1381111_1381909_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|343aa|up_8|NZ_CP016814.1_1381905_1382934_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|373aa|up_7|NZ_CP016814.1_1382994_1384113_-	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|130aa|up_6|NZ_CP016814.1_1384384_1384774_+	NA	NA|152aa|up_5|NZ_CP016814.1_1384953_1385409_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|42aa|up_4|NZ_CP016814.1_1385473_1385599_-	NA	NA|46aa|up_3|NZ_CP016814.1_1385561_1385699_+	NA	NA|393aa|up_2|NZ_CP016814.1_1385914_1387093_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|259aa|up_1|NZ_CP016814.1_1387112_1387889_+	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|318aa|up_0|NZ_CP016814.1_1388017_1388971_+	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|264aa|down_0|NZ_CP016814.1_1390171_1390963_-	pfam17409, MoaF_C, MoaF C-terminal domain	NA|259aa|down_1|NZ_CP016814.1_1390988_1391765_-	cd05233, SDR_c, classical (c) SDRs	NA|578aa|down_2|NZ_CP016814.1_1391852_1393586_-	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|396aa|down_3|NZ_CP016814.1_1393630_1394818_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|228aa|down_4|NZ_CP016814.1_1395243_1395927_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|396aa|down_5|NZ_CP016814.1_1395975_1397163_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|372aa|down_6|NZ_CP016814.1_1397159_1398275_+	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|198aa|down_7|NZ_CP016814.1_1398281_1398875_-	pfam11354, DUF3156, Protein of unknown function (DUF3156)	NA|500aa|down_8|NZ_CP016814.1_1398852_1400352_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|122aa|down_9|NZ_CP016814.1_1400724_1401090_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]
GCF_001708225.1_ASM170822v1	NZ_CP016814	Klebsiella pneumoniae strain ED23 chromosome, complete genome	3	1689376-1689453	3	CRISPRCasFinder	no		DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	AAGGCGTCAGCCGCCGCCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA|71aa|down_7|NZ_CP016814.1_1696054_1696267_-	NA|362aa|up_9|NZ_CP016814.1_1674432_1675518_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NZ_CP016814.1_1676051_1676483_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NZ_CP016814.1_1676534_1679222_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NZ_CP016814.1_1679495_1680779_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|440aa|up_5|NZ_CP016814.1_1680933_1682253_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NZ_CP016814.1_1682249_1683206_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NZ_CP016814.1_1683267_1683993_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|313aa|up_2|NZ_CP016814.1_1684885_1685824_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NZ_CP016814.1_1685820_1687347_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NZ_CP016814.1_1687445_1688828_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NZ_CP016814.1_1689605_1690082_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NZ_CP016814.1_1690152_1691442_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NZ_CP016814.1_1691655_1692696_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NZ_CP016814.1_1692692_1693850_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NZ_CP016814.1_1693833_1694589_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NZ_CP016814.1_1694581_1695304_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NZ_CP016814.1_1695245_1695968_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|71aa|down_7|NZ_CP016814.1_1696054_1696267_-	NA	NA|674aa|down_8|NZ_CP016814.1_1696678_1698700_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|366aa|down_9|NZ_CP016814.1_1698948_1700046_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB
GCF_001708225.1_ASM170822v1	NZ_CP016814	Klebsiella pneumoniae strain ED23 chromosome, complete genome	4	3046906-3048214	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC	28,28,28	2	2	3047910-3047942|3048032-3048064	NZ_CP016814.1_3846552-3846584|NZ_CP016814.1_3883122-3883090	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	21,21,21	21	TypeI-E	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|77aa|up_9|NZ_CP016814.1_3037653_3037884_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP016814.1_3037880_3038618_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP016814.1_3038667_3039327_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP016814.1_3039323_3039947_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|447aa|up_5|NZ_CP016814.1_3040030_3041371_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP016814.1_3041381_3043166_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|252aa|up_3|NZ_CP016814.1_3043168_3043924_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP016814.1_3044425_3044797_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP016814.1_3044857_3045541_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP016814.1_3045551_3046667_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|down_0|NZ_CP016814.1_3048261_3048549_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP016814.1_3048526_3049402_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|down_2|NZ_CP016814.1_3049401_3050118_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP016814.1_3050130_3051165_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP016814.1_3051194_3051842_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP016814.1_3051834_3052401_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP016814.1_3052412_3053936_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NZ_CP016814.1_3053939_3056555_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NZ_CP016814.1_3057491_3058562_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NZ_CP016814.1_3058554_3060324_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_001708225.1_ASM170822v1	NZ_CP016814	Klebsiella pneumoniae strain ED23 chromosome, complete genome	5	3056968-3057242	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCNTGTGGGGAAGAC,CGGAAACACCCCCACGCGTGTGGGGAAGACATA	28,28,33	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	4,4,2	4	TypeI-E	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|228aa|up_9|NZ_CP016814.1_3044857_3045541_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NZ_CP016814.1_3045551_3046667_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|up_7|NZ_CP016814.1_3048261_3048549_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NZ_CP016814.1_3048526_3049402_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|up_5|NZ_CP016814.1_3049401_3050118_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_4|NZ_CP016814.1_3050130_3051165_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NZ_CP016814.1_3051194_3051842_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NZ_CP016814.1_3051834_3052401_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NZ_CP016814.1_3052412_3053936_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_0|NZ_CP016814.1_3053939_3056555_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NZ_CP016814.1_3057491_3058562_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP016814.1_3058554_3060324_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP016814.1_3060397_3061486_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|360aa|down_3|NZ_CP016814.1_3061788_3062868_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_4|NZ_CP016814.1_3063115_3065266_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|54aa|down_5|NZ_CP016814.1_3065308_3065470_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_6|NZ_CP016814.1_3066761_3067961_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_7|NZ_CP016814.1_3068077_3068512_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_8|NZ_CP016814.1_3069077_3070310_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|131aa|down_9|NZ_CP016814.1_3070346_3070739_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
