The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016913	Bacillus amyloliquefaciens strain RD7-7, complete genome	3688209	656544	666435	3688209		Synechococcus_phage(50.0%)	9	NA	NA
WP_065980868.1|656544_657837_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	27.3	1.3e-18
WP_065980869.1|657912_658632_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	44.7	9.8e-48
WP_014469855.1|658631_658886_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	A0A0E3FKD5	Synechococcus_phage	35.8	2.1e-05
WP_065980870.1|658882_659566_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_065980871.1|659549_661778_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.1	1.7e-159
WP_065980872.1|661753_663184_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	2.1e-54
WP_013351282.1|663275_664316_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.4	6.3e-64
WP_065980873.1|664312_664900_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.9	7.7e-27
WP_065980874.1|664896_666435_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.4	1.9e-77
>prophage 2
NZ_CP016913	Bacillus amyloliquefaciens strain RD7-7, complete genome	3688209	1186798	1219318	3688209	terminase,portal,capsid,holin,tail,plate	Bacillus_phage(32.26%)	42	NA	NA
WP_115998307.1|1186798_1187935_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	47.9	4.9e-94
WP_142746858.1|1187924_1188059_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA	NA
WP_065981230.1|1188202_1189156_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	69.3	1.3e-63
WP_065981231.1|1189193_1189571_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	37.6	2.6e-15
WP_065981232.1|1189680_1190283_+	poly-gamma-glutamate hydrolase family protein	NA	F8WQ53	Bacillus_phage	46.8	1.8e-42
WP_013351933.1|1190469_1191060_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	52.3	1.8e-39
WP_065981233.1|1191207_1191546_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	50.8	4.5e-19
WP_045506729.1|1191736_1191916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065981234.1|1191905_1192733_+|portal	phage portal protein	portal	S6BFM4	Thermus_phage	28.5	1.9e-18
WP_065521624.1|1192632_1193433_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	44.7	6.1e-59
WP_065981235.1|1193697_1194039_+|portal	phage portal protein	portal	NA	NA	NA	NA
WP_045506717.1|1194028_1194232_+	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	48.5	2.7e-11
WP_013351940.1|1194346_1194856_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0K2CNQ1	Brevibacillus_phage	43.3	3.2e-21
WP_065981236.1|1194970_1195768_+|terminase	terminase	terminase	A0A0S2MVB6	Bacillus_phage	49.0	1.2e-59
WP_065981237.1|1195764_1197063_+|terminase	PBSX family phage terminase large subunit	terminase	M4ZRM5	Bacillus_phage	59.2	2.7e-149
WP_155759188.1|1197111_1198503_+|portal	phage portal protein	portal	A0A1B1P7C8	Bacillus_phage	55.6	5.2e-138
WP_065981239.1|1198522_1199365_+|portal	phage portal protein	portal	A0A1B1P7E4	Bacillus_phage	57.6	5.7e-55
WP_065981240.1|1199391_1200327_+|capsid	major capsid protein	capsid	A0A1B1P7E3	Bacillus_phage	62.5	7.3e-104
WP_065981241.1|1200343_1200727_+	DUF3199 family protein	NA	NA	NA	NA	NA
WP_065981242.1|1200723_1201080_+	DUF3599 family protein	NA	NA	NA	NA	NA
WP_065981243.1|1201076_1201580_+	HK97 gp10 family phage protein	NA	A0A249XXA4	Clostridium_phage	41.0	1.2e-36
WP_065981244.1|1201576_1202023_+|portal	phage portal protein	portal	NA	NA	NA	NA
WP_065981245.1|1202019_1202229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065981246.1|1202228_1203626_+|tail	phage tail sheath protein	tail	A0A0A7RTT5	Clostridium_phage	41.0	1.4e-82
WP_003154837.1|1203627_1204071_+|tail	phage tail tube protein	tail	A0A0K2CNG3	Brevibacillus_phage	45.2	8.4e-26
WP_003154836.1|1204145_1204592_+|portal	phage portal protein	portal	A0A0A7RTY8	Clostridium_phage	35.8	1.0e-10
WP_015239684.1|1204633_1204786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065981247.1|1204773_1210101_+	transglycosylase SLT domain-containing protein	NA	A0A1L2JY60	Aeribacillus_phage	47.5	3.1e-42
WP_065981248.1|1210093_1210753_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A090DBR9	Clostridium_phage	33.5	3.4e-23
WP_065981249.1|1210766_1211744_+|portal	phage portal protein	portal	A0A1L6BY20	Clostridium_phage	30.2	4.9e-34
WP_065981250.1|1211743_1212010_+	DUF2577 domain-containing protein	NA	S6C459	Thermus_phage	38.6	1.2e-06
WP_014470499.1|1212159_1212585_+	DUF2634 domain-containing protein	NA	A0A2H4J6K5	uncultured_Caudovirales_phage	35.2	3.3e-11
WP_065981251.1|1212577_1213624_+|plate	baseplate J/gp47 family protein	plate	S6AVU3	Thermus_phage	43.5	2.9e-69
WP_045506670.1|1213607_1214186_+	YmfQ family protein	NA	A0A0A7RTT8	Clostridium_phage	30.3	2.4e-12
WP_065981252.1|1214182_1214455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065981253.1|1214457_1216428_+	hypothetical protein	NA	A0A1P8CWR7	Bacillus_phage	34.0	2.7e-55
WP_065981254.1|1216440_1216821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013351962.1|1216825_1217023_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	63.6	1.5e-14
WP_065981255.1|1217070_1217832_+|portal	phage portal protein	portal	NA	NA	NA	NA
WP_013351964.1|1217885_1218149_+	protein xhlA	NA	A0A2H4JD40	uncultured_Caudovirales_phage	64.3	4.0e-23
WP_013351965.1|1218162_1218426_+|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	65.5	5.2e-23
WP_065981256.1|1218439_1219318_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	60.5	4.8e-81
>prophage 3
NZ_CP016913	Bacillus amyloliquefaciens strain RD7-7, complete genome	3688209	1725348	1731561	3688209		Bacillus_phage(50.0%)	7	NA	NA
WP_013352354.1|1725348_1725741_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	60.0	1.7e-30
WP_045506021.1|1725700_1727803_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	85.5	0.0e+00
WP_013352356.1|1727820_1728810_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.3	5.1e-156
WP_065981525.1|1728858_1729479_+	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	47.9	1.6e-46
WP_065981526.1|1729527_1730286_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	49.1	6.4e-50
WP_065981527.1|1730319_1730544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038462785.1|1730592_1731561_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.9	8.0e-53
>prophage 4
NZ_CP016913	Bacillus amyloliquefaciens strain RD7-7, complete genome	3688209	1772099	1782535	3688209		Bacillus_phage(71.43%)	13	NA	NA
WP_065981560.1|1772099_1772720_+	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	36.4	2.8e-19
WP_076983233.1|1772872_1772971_-	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_013352404.1|1773406_1773943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065981561.1|1774270_1774453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065981562.1|1774618_1777036_-	peptidase G2	NA	D6R401	Bacillus_phage	50.3	5.9e-222
WP_013352407.1|1777322_1777562_+	TM2 domain-containing protein	NA	M4ZS56	Bacillus_phage	63.0	4.5e-18
WP_065981563.1|1777733_1778168_+	dUTP diphosphatase	NA	A0A1P8CX51	Bacillus_phage	87.3	3.5e-69
WP_013352409.1|1778217_1778403_-	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
WP_065981564.1|1778610_1779432_+	poly-gamma-glutamate hydrolase family protein	NA	O64134	Bacillus_phage	42.6	4.1e-50
WP_045505921.1|1779674_1780505_+	prohibitin family protein	NA	A0A172JI70	Bacillus_phage	72.7	2.9e-104
WP_065981565.1|1780532_1780982_-	YndM family protein	NA	NA	NA	NA	NA
WP_065981566.1|1781136_1781565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007611720.1|1781914_1782535_-	repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.3	8.5e-16
>prophage 5
NZ_CP016913	Bacillus amyloliquefaciens strain RD7-7, complete genome	3688209	2125401	2131654	3688209		Staphylococcus_phage(66.67%)	9	NA	NA
WP_013352726.1|2125401_2125995_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.6	2.0e-14
WP_065522836.1|2125984_2126740_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.7	1.1e-09
WP_076983148.1|2126947_2127037_+	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_065522835.1|2127124_2127646_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_065981795.1|2127711_2128086_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA	NA
WP_013352730.1|2128202_2128667_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	60.0	7.2e-44
WP_065981796.1|2128699_2129896_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	54.7	2.8e-116
WP_045510904.1|2129910_2130558_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	44.3	4.4e-39
WP_065981797.1|2130538_2131654_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	36.0	5.7e-55
>prophage 6
NZ_CP016913	Bacillus amyloliquefaciens strain RD7-7, complete genome	3688209	3346797	3402818	3688209	coat,tRNA,protease	Bacillus_phage(12.5%)	55	NA	NA
WP_065982573.1|3346797_3348468_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_065982574.1|3348464_3348893_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_065982575.1|3349529_3350924_-	YncE family protein	NA	NA	NA	NA	NA
WP_076983252.1|3351152_3352298_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	42.4	1.1e-72
WP_115996635.1|3352281_3352401_+	phosphatase	NA	NA	NA	NA	NA
WP_065982576.1|3352534_3353407_-	agmatinase	NA	NA	NA	NA	NA
WP_013353957.1|3353465_3354296_-	spermidine synthase	NA	NA	NA	NA	NA
WP_065982577.1|3354495_3356568_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_065982578.1|3357168_3357690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065982579.1|3357702_3358362_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_065982580.1|3358467_3358656_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_065982581.1|3358694_3359114_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_065982582.1|3359493_3360873_+	amino acid permease	NA	NA	NA	NA	NA
WP_065982583.1|3360937_3361438_-	YwgA family protein	NA	NA	NA	NA	NA
WP_065982584.1|3361477_3362779_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	28.9	6.1e-24
WP_065982585.1|3362940_3363165_-	DUF1450 domain-containing protein	NA	NA	NA	NA	NA
WP_065982586.1|3363368_3364142_+	RsfA family transcriptional regulator	NA	NA	NA	NA	NA
WP_081309512.1|3364441_3364717_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_065982588.1|3364717_3365272_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_065982589.1|3365369_3366290_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	39.8	1.5e-37
WP_065982590.1|3366286_3367240_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_065982591.1|3367229_3368066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065982592.1|3368056_3368854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065982593.1|3368822_3369746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013353974.1|3369795_3369975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065982594.1|3370126_3370990_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_065982595.1|3371045_3371936_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	40.2	2.7e-07
WP_065982596.1|3372051_3373029_+	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
WP_013353978.1|3373067_3374039_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_014471181.1|3374295_3375060_+	heme-dependent peroxidase	NA	NA	NA	NA	NA
WP_065982597.1|3375178_3375958_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_065522450.1|3375973_3377173_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_065982598.1|3377185_3378367_-	MFS transporter	NA	NA	NA	NA	NA
WP_065982599.1|3378363_3379782_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_041481683.1|3380555_3381266_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_014471186.1|3381255_3381870_-	bacilysin biosynthesis protein BacA	NA	NA	NA	NA	NA
WP_065982600.1|3382031_3383270_-	MFS transporter	NA	NA	NA	NA	NA
WP_081309513.1|3383490_3384693_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_065982601.1|3384724_3386143_-	amino acid permease	NA	NA	NA	NA	NA
WP_065982602.1|3386167_3387850_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_065982603.1|3387921_3389469_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_065982604.1|3389674_3390961_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_014471192.1|3391147_3391609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065522457.1|3391836_3392292_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_065982605.1|3392288_3393137_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.3	4.5e-36
WP_065982606.1|3393157_3394108_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	42.9	8.6e-68
WP_065982607.1|3394110_3394848_-	NTP transferase domain-containing protein	NA	G3MA50	Bacillus_virus	43.1	2.2e-47
WP_065982608.1|3394875_3395880_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_065982609.1|3395881_3396622_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_065982610.1|3396614_3397736_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_065982611.1|3397735_3398599_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_065982612.1|3398599_3399769_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_065982613.1|3399791_3401216_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_065982614.1|3401220_3401991_-	glycosyltransferase family 2 protein	NA	A0A0F7L2F7	uncultured_marine_virus	30.7	7.6e-06
WP_065982615.1|3402272_3402818_+|coat	spore coat protein GerQ	coat	NA	NA	NA	NA
