assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	1	40832-40958	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	CCGCCGGGCCGCCCCAAGGCAAAAAGCCCCCTTGGGGGGCAGCAAGC	47	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA|102aa|down_1|NZ_CP012334.1_42465_42771_-,NA|102aa|down_2|NZ_CP012334.1_43195_43501_-	NA|306aa|up_9|NZ_CP012334.1_30823_31741_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|340aa|up_8|NZ_CP012334.1_31780_32800_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|296aa|up_7|NZ_CP012334.1_32832_33720_-	PRK09986, PRK09986, LysR family transcriptional regulator	NA|431aa|up_6|NZ_CP012334.1_33858_35151_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|393aa|up_5|NZ_CP012334.1_35193_36372_+	cd06336, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|290aa|up_4|NZ_CP012334.1_36430_37300_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|334aa|up_3|NZ_CP012334.1_37307_38309_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|261aa|up_2|NZ_CP012334.1_38305_39088_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|237aa|up_1|NZ_CP012334.1_39065_39776_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|300aa|up_0|NZ_CP012334.1_39869_40769_+	cd10979, CE4_PuuE_like, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases	NA|331aa|down_0|NZ_CP012334.1_40976_41969_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|102aa|down_1|NZ_CP012334.1_42465_42771_-	NA	NA|102aa|down_2|NZ_CP012334.1_43195_43501_-	NA	NA|102aa|down_3|NZ_CP012334.1_43914_44220_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|102aa|down_4|NZ_CP012334.1_44642_44948_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|102aa|down_5|NZ_CP012334.1_45368_45674_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|102aa|down_6|NZ_CP012334.1_46087_46393_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|226aa|down_7|NZ_CP012334.1_46675_47353_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|287aa|down_8|NZ_CP012334.1_47435_48296_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|283aa|down_9|NZ_CP012334.1_48297_49146_+	cd10916, CE4_PuuE_HpPgdA_like, Catalytic domain of bacterial PuuE allantoinases, Helicobacter pylori peptidoglycan deacetylase (HpPgdA), and similar proteins
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	2	118557-118652	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	CCCCCTCAAGGGGGCGACGCCGGCGGACCGG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA	NA|177aa|up_9|NZ_CP012334.1_110367_110898_+	pfam02417, Chromate_transp, Chromate transporter	NA|279aa|up_8|NZ_CP012334.1_110967_111804_+	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents	NA|267aa|up_7|NZ_CP012334.1_111800_112601_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|173aa|up_6|NZ_CP012334.1_112835_113354_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|288aa|up_5|NZ_CP012334.1_113468_114332_+	pfam04333, MlaA, MlaA lipoprotein	NA|208aa|up_4|NZ_CP012334.1_114413_115037_+	pfam05494, MlaC, MlaC protein	NA|266aa|up_3|NZ_CP012334.1_115150_115948_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|263aa|up_2|NZ_CP012334.1_116007_116796_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|81aa|up_1|NZ_CP012334.1_117035_117278_+	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]	NA|418aa|up_0|NZ_CP012334.1_117277_118531_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|232aa|down_0|NZ_CP012334.1_118733_119429_+	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed	NA|435aa|down_1|NZ_CP012334.1_119519_120824_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|378aa|down_2|NZ_CP012334.1_120820_121954_+	PRK04870, PRK04870, histidinol-phosphate transaminase	NA|196aa|down_3|NZ_CP012334.1_122038_122626_+	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB	NA|225aa|down_4|NZ_CP012334.1_122660_123335_+	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|248aa|down_5|NZ_CP012334.1_123419_124163_+	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated	NA|271aa|down_6|NZ_CP012334.1_124159_124972_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|135aa|down_7|NZ_CP012334.1_125463_125868_+	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed	NA|117aa|down_8|NZ_CP012334.1_125864_126215_+	PRK00400, hisE, phosphoribosyl-ATP diphosphatase	NA|123aa|down_9|NZ_CP012334.1_126247_126616_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	3	124990-125086	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	CCCACCCCCGAACGCTGCGCGCTTCCCCCTCAA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA	NA|263aa|up_9|NZ_CP012334.1_116007_116796_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|81aa|up_8|NZ_CP012334.1_117035_117278_+	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]	NA|418aa|up_7|NZ_CP012334.1_117277_118531_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|232aa|up_6|NZ_CP012334.1_118733_119429_+	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed	NA|435aa|up_5|NZ_CP012334.1_119519_120824_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|378aa|up_4|NZ_CP012334.1_120820_121954_+	PRK04870, PRK04870, histidinol-phosphate transaminase	NA|196aa|up_3|NZ_CP012334.1_122038_122626_+	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB	NA|225aa|up_2|NZ_CP012334.1_122660_123335_+	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|248aa|up_1|NZ_CP012334.1_123419_124163_+	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated	NA|271aa|up_0|NZ_CP012334.1_124159_124972_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|135aa|down_0|NZ_CP012334.1_125463_125868_+	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed	NA|117aa|down_1|NZ_CP012334.1_125864_126215_+	PRK00400, hisE, phosphoribosyl-ATP diphosphatase	NA|123aa|down_2|NZ_CP012334.1_126247_126616_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|75aa|down_3|NZ_CP012334.1_126631_126856_+	PRK02958, tatA, Sec-independent protein translocase subunit TatA	NA|247aa|down_4|NZ_CP012334.1_126975_127716_+	PRK01919, tatB, Sec-independent protein translocase subunit TatB	NA|264aa|down_5|NZ_CP012334.1_127712_128504_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|142aa|down_6|NZ_CP012334.1_128564_128990_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|389aa|down_7|NZ_CP012334.1_128949_130116_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|259aa|down_8|NZ_CP012334.1_130134_130911_+	PRK10799, PRK10799, type 2 GTP cyclohydrolase I	NA|150aa|down_9|NZ_CP012334.1_131054_131504_-	PRK13952, mscL, large conductance mechanosensitive channel protein MscL
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	4	282376-282484	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	TGGGAGGGCGCGCGCCCTTCGGGCGGCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA|249aa|down_1|NZ_CP012334.1_283874_284621_+	NA|359aa|up_9|NZ_CP012334.1_265632_266709_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|301aa|up_8|NZ_CP012334.1_266719_267622_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|416aa|up_7|NZ_CP012334.1_267652_268900_+	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|538aa|up_6|NZ_CP012334.1_268903_270517_+	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|341aa|up_5|NZ_CP012334.1_270494_271517_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|355aa|up_4|NZ_CP012334.1_271572_272637_+	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|993aa|up_3|NZ_CP012334.1_272733_275712_-	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|743aa|up_2|NZ_CP012334.1_275853_278082_-	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|401aa|up_1|NZ_CP012334.1_278415_279618_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|689aa|up_0|NZ_CP012334.1_280271_282338_-	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|324aa|down_0|NZ_CP012334.1_282511_283483_-	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|249aa|down_1|NZ_CP012334.1_283874_284621_+	NA	NA|282aa|down_2|NZ_CP012334.1_284744_285590_-	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|621aa|down_3|NZ_CP012334.1_285586_287449_-	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|308aa|down_4|NZ_CP012334.1_287501_288425_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|1228aa|down_5|NZ_CP012334.1_288578_292262_+	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|1338aa|down_6|NZ_CP012334.1_292254_296268_+	PRK10876, recB, exonuclease V subunit beta; Provisional	NA|757aa|down_7|NZ_CP012334.1_296267_298538_+	PRK10875, recD, exodeoxyribonuclease V subunit alpha	NA|664aa|down_8|NZ_CP012334.1_298541_300533_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|296aa|down_9|NZ_CP012334.1_300732_301620_-	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	5	991365-991460	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	GCGCTGCGCGCGTCCCCCTCAAGGGGGCGACGC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA|979aa|down_2|NZ_CP012334.1_993637_996574_+,NA|145aa|down_6|NZ_CP012334.1_999150_999585_+,NA|110aa|down_7|NZ_CP012334.1_1000304_1000634_-	NA|314aa|up_9|NZ_CP012334.1_982241_983183_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|177aa|up_8|NZ_CP012334.1_983722_984253_-	TIGR02322, Ribose_15-bisphosphate_phosphokinase_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	NA|327aa|up_7|NZ_CP012334.1_984282_985263_-	TIGR03223, Phn_opern_protn, putative phosphonate metabolism protein	NA|399aa|up_6|NZ_CP012334.1_985275_986472_-	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional	NA|241aa|up_5|NZ_CP012334.1_986582_987305_-	TIGR02325, Probable_transcriptional_regulator_PhnF, phosphonates metabolism transcriptional regulator PhnF	NA|155aa|up_4|NZ_CP012334.1_987428_987893_+	pfam06754, PhnG, Phosphonate metabolism protein PhnG	NA|201aa|up_3|NZ_CP012334.1_987894_988497_+	PRK10147, phnH, phosphonate C-P lyase system protein PhnH	NA|384aa|up_2|NZ_CP012334.1_988498_989650_+	pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI)	NA|307aa|up_1|NZ_CP012334.1_989646_990567_+	pfam06007, PhnJ, Phosphonate metabolism protein PhnJ	NA|259aa|up_0|NZ_CP012334.1_990566_991343_+	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional	NA|238aa|down_0|NZ_CP012334.1_991555_992269_+	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|401aa|down_1|NZ_CP012334.1_992272_993475_+	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional	NA|979aa|down_2|NZ_CP012334.1_993637_996574_+	NA	NA|174aa|down_3|NZ_CP012334.1_996607_997129_-	PRK09967, PRK09967, OmpA family protein	NA|427aa|down_4|NZ_CP012334.1_997150_998431_-	PRK09966, PRK09966, diguanylate cyclase DgcN	NA|167aa|down_5|NZ_CP012334.1_998427_998928_-	pfam13689, DUF4154, Domain of unknown function (DUF4154)	NA|145aa|down_6|NZ_CP012334.1_999150_999585_+	NA	NA|110aa|down_7|NZ_CP012334.1_1000304_1000634_-	NA	NA|355aa|down_8|NZ_CP012334.1_1000893_1001958_+	PRK09196, PRK09196, fructose-bisphosphate aldolase class II	NA|293aa|down_9|NZ_CP012334.1_1002071_1002950_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	6	1101276-1101392	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	CCCCGAGGGGGCCGTTTTTGTCTTGGGGCGGCCCT	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA|137aa|down_8|NZ_CP012334.1_1108831_1109242_+	NA|141aa|up_9|NZ_CP012334.1_1093397_1093820_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|71aa|up_8|NZ_CP012334.1_1093884_1094097_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|307aa|up_7|NZ_CP012334.1_1094216_1095137_-	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|226aa|up_6|NZ_CP012334.1_1095343_1096021_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|114aa|up_5|NZ_CP012334.1_1096017_1096359_+	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|457aa|up_4|NZ_CP012334.1_1096749_1098120_+	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|127aa|up_3|NZ_CP012334.1_1098152_1098533_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|268aa|up_2|NZ_CP012334.1_1098592_1099396_+	pfam07264, EI24, Etoposide-induced protein 2	NA|270aa|up_1|NZ_CP012334.1_1099414_1100224_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|294aa|up_0|NZ_CP012334.1_1100372_1101254_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|326aa|down_0|NZ_CP012334.1_1101483_1102461_-	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|195aa|down_1|NZ_CP012334.1_1102878_1103463_+	TIGR01841, hypothetical_protein, phasin family protein	NA|350aa|down_2|NZ_CP012334.1_1103659_1104709_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|248aa|down_3|NZ_CP012334.1_1104900_1105644_-	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|252aa|down_4|NZ_CP012334.1_1105704_1106460_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|192aa|down_5|NZ_CP012334.1_1106456_1107032_-	cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|223aa|down_6|NZ_CP012334.1_1107042_1107711_-	pfam11161, DUF2944, Protein of unknown function (DUF2946)	NA|310aa|down_7|NZ_CP012334.1_1107793_1108723_-	cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB	NA|137aa|down_8|NZ_CP012334.1_1108831_1109242_+	NA	NA|302aa|down_9|NZ_CP012334.1_1109265_1110171_-	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	7	2311425-2311511	7	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	GCGCGAAGCGCTTCGGGGGTGGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA|692aa|up_5|NZ_CP012334.1_2301753_2303829_-,NA|682aa|up_4|NZ_CP012334.1_2304400_2306446_-,NA|283aa|up_3|NZ_CP012334.1_2306804_2307653_-,NA	NA|791aa|up_9|NZ_CP012334.1_2296405_2298778_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|67aa|up_8|NZ_CP012334.1_2299112_2299313_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|243aa|up_7|NZ_CP012334.1_2299443_2300172_+	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|473aa|up_6|NZ_CP012334.1_2300235_2301654_+	PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated	NA|692aa|up_5|NZ_CP012334.1_2301753_2303829_-	NA	NA|682aa|up_4|NZ_CP012334.1_2304400_2306446_-	NA	NA|283aa|up_3|NZ_CP012334.1_2306804_2307653_-	NA	NA|85aa|up_2|NZ_CP012334.1_2307999_2308254_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|239aa|up_1|NZ_CP012334.1_2308366_2309083_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|688aa|up_0|NZ_CP012334.1_2309132_2311196_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|283aa|down_0|NZ_CP012334.1_2311519_2312368_-	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA|209aa|down_1|NZ_CP012334.1_2312364_2312991_-	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|585aa|down_2|NZ_CP012334.1_2312987_2314742_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|903aa|down_3|NZ_CP012334.1_2315001_2317710_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|564aa|down_4|NZ_CP012334.1_2317722_2319414_+	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|604aa|down_5|NZ_CP012334.1_2319426_2321238_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|258aa|down_6|NZ_CP012334.1_2321401_2322175_-	pfam04989, CmcI, Cephalosporin hydroxylase	NA|350aa|down_7|NZ_CP012334.1_2322167_2323217_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|276aa|down_8|NZ_CP012334.1_2323220_2324048_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|408aa|down_9|NZ_CP012334.1_2324044_2325268_-	pfam08484, Methyltransf_14, C-methyltransferase C-terminal domain
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	8	2457657-2457757	8	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	GGCGGAGCCGGATCCGCGGCGTCC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA	NA|387aa|up_9|NZ_CP012334.1_2448332_2449493_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|319aa|up_8|NZ_CP012334.1_2449626_2450583_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|316aa|up_7|NZ_CP012334.1_2450589_2451537_+	PRK00283, xerD, tyrosine recombinase	NA|226aa|up_6|NZ_CP012334.1_2451562_2452240_-	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|221aa|up_5|NZ_CP012334.1_2452400_2453063_+	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|280aa|up_4|NZ_CP012334.1_2453074_2453914_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|354aa|up_3|NZ_CP012334.1_2453976_2455038_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|135aa|up_2|NZ_CP012334.1_2455148_2455553_+	pfam01475, FUR, Ferric uptake regulator family	NA|298aa|up_1|NZ_CP012334.1_2455589_2456483_-	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|331aa|up_0|NZ_CP012334.1_2456601_2457594_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|231aa|down_0|NZ_CP012334.1_2457822_2458515_+	PRK09262, PRK09262, hypothetical protein; Provisional	NA|327aa|down_1|NZ_CP012334.1_2458818_2459799_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|332aa|down_2|NZ_CP012334.1_2459865_2460861_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|297aa|down_3|NZ_CP012334.1_2460870_2461761_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|173aa|down_4|NZ_CP012334.1_2461757_2462276_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|821aa|down_5|NZ_CP012334.1_2462259_2464722_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|282aa|down_6|NZ_CP012334.1_2464775_2465621_+	cd07823, SRPBCC_5, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|193aa|down_7|NZ_CP012334.1_2465779_2466358_+	pfam02417, Chromate_transp, Chromate transporter	NA|180aa|down_8|NZ_CP012334.1_2466354_2466894_+	pfam02417, Chromate_transp, Chromate transporter	NA|258aa|down_9|NZ_CP012334.1_2467010_2467784_+	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	9	2802710-2802912	9	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	CGGCCCTCTTCAGCGAACCGGCC	23	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA|184aa|down_9|NZ_CP012334.1_2812387_2812939_+	NA|1053aa|up_9|NZ_CP012334.1_2789686_2792845_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|507aa|up_8|NZ_CP012334.1_2792841_2794362_-	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|169aa|up_7|NZ_CP012334.1_2794456_2794963_-	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|326aa|up_6|NZ_CP012334.1_2795130_2796108_-	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	NA|406aa|up_5|NZ_CP012334.1_2796179_2797397_-	PLN02409, PLN02409, serine--glyoxylate aminotransaminase	NA|245aa|up_4|NZ_CP012334.1_2797576_2798311_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|182aa|up_3|NZ_CP012334.1_2798451_2798997_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|192aa|up_2|NZ_CP012334.1_2798998_2799574_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|161aa|up_1|NZ_CP012334.1_2800027_2800510_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|185aa|up_0|NZ_CP012334.1_2800983_2801538_+	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|317aa|down_0|NZ_CP012334.1_2803211_2804162_+	pfam11453, DUF2950, Protein of unknown function (DUF2950)	NA|333aa|down_1|NZ_CP012334.1_2804251_2805250_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|262aa|down_2|NZ_CP012334.1_2805343_2806129_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|375aa|down_3|NZ_CP012334.1_2806140_2807265_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|316aa|down_4|NZ_CP012334.1_2807280_2808228_+	cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains	NA|269aa|down_5|NZ_CP012334.1_2808300_2809107_+	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|354aa|down_6|NZ_CP012334.1_2809147_2810209_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|325aa|down_7|NZ_CP012334.1_2810230_2811205_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|300aa|down_8|NZ_CP012334.1_2811261_2812161_+	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)	NA|184aa|down_9|NZ_CP012334.1_2812387_2812939_+	NA
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	10	3063175-3063283	10	CRISPRCasFinder	no	cas3	csa3,DEDDh,DinG,RT,cas3,WYL	Unclear	AGCAAGCCGACTTGTCGGCGCCGCG	25	0	0	NA	NA	NA	1	1	Unclear	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA|136aa|down_8|NZ_CP012334.1_3075087_3075495_+	NA|234aa|up_9|NZ_CP012334.1_3050220_3050922_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|399aa|up_8|NZ_CP012334.1_3051029_3052226_-	PRK10983, PRK10983, AI-2E family transporter YdiK	NA|475aa|up_7|NZ_CP012334.1_3052442_3053867_-	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]	NA|245aa|up_6|NZ_CP012334.1_3053982_3054717_-	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr	NA|124aa|up_5|NZ_CP012334.1_3055193_3055565_+	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]	NA|160aa|up_4|NZ_CP012334.1_3055586_3056066_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|365aa|up_3|NZ_CP012334.1_3056156_3057251_-	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|384aa|up_2|NZ_CP012334.1_3058294_3059446_-	cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor	NA|643aa|up_1|NZ_CP012334.1_3059596_3061525_+	pfam04412, DUF521, Protein of unknown function (DUF521)	NA|498aa|up_0|NZ_CP012334.1_3061618_3063112_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|376aa|down_0|NZ_CP012334.1_3063323_3064451_-	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein	NA|196aa|down_1|NZ_CP012334.1_3064720_3065308_+	pfam06821, Ser_hydrolase, Serine hydrolase	NA|1129aa|down_2|NZ_CP012334.1_3065635_3069022_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|317aa|down_3|NZ_CP012334.1_3069018_3069969_-	PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional	cas3|698aa|down_4|NZ_CP012334.1_3070020_3072114_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|129aa|down_5|NZ_CP012334.1_3072155_3072542_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|307aa|down_6|NZ_CP012334.1_3072601_3073522_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|465aa|down_7|NZ_CP012334.1_3073618_3075013_+	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|136aa|down_8|NZ_CP012334.1_3075087_3075495_+	NA	NA|323aa|down_9|NZ_CP012334.1_3075622_3076591_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold
GCF_001704295.1_ASM170429v1	NZ_CP012334	Bordetella sp. H567 chromosome, complete genome	11	3948433-3948524	11	CRISPRCasFinder	no		csa3,DEDDh,DinG,RT,cas3,WYL	Orphan	CCGCGCTTCCCCCTCAAGGGGGCGACGC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,RT,cas3,WYL	NA,NA	NA|263aa|up_9|NZ_CP012334.1_3934213_3935002_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|371aa|up_8|NZ_CP012334.1_3934998_3936111_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|471aa|up_7|NZ_CP012334.1_3936107_3937520_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|465aa|up_6|NZ_CP012334.1_3937303_3938698_-	cd03144, GATase1_ScBLP_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)	NA|354aa|up_5|NZ_CP012334.1_3938797_3939859_-	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|842aa|up_4|NZ_CP012334.1_3940112_3942638_+	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|316aa|up_3|NZ_CP012334.1_3942707_3943655_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|320aa|up_2|NZ_CP012334.1_3943954_3944914_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|202aa|up_1|NZ_CP012334.1_3944926_3945532_-	COG4764, COG4764, Uncharacterized protein conserved in bacteria [Function unknown]	NA|862aa|up_0|NZ_CP012334.1_3945811_3948397_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|746aa|down_0|NZ_CP012334.1_3948849_3951087_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|295aa|down_1|NZ_CP012334.1_3951194_3952079_+	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|472aa|down_2|NZ_CP012334.1_3952107_3953523_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|107aa|down_3|NZ_CP012334.1_3953569_3953890_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|152aa|down_4|NZ_CP012334.1_3954012_3954468_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|474aa|down_5|NZ_CP012334.1_3954591_3956013_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|299aa|down_6|NZ_CP012334.1_3956326_3957223_-	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)	NA|333aa|down_7|NZ_CP012334.1_3957267_3958266_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|263aa|down_8|NZ_CP012334.1_3958295_3959084_-	PRK07044, PRK07044, aldolase II superfamily protein; Provisional	NA|266aa|down_9|NZ_CP012334.1_3959363_3960161_+	COG1414, IclR, Transcriptional regulator [Transcription]
