assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001704155.1_ASM170415v1	NZ_CP016294	Stenotrophomonas rhizophila strain QL-P4 chromosome, complete genome	1	427575-427714	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GGTAGAGCCGACTGTTAGTCGGCTG	25	1	1	427600-427628	NZ_CP016294.1_777496-777524	NA	2	2	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA|286aa|down_1|NZ_CP016294.1_429351_430209_-	NA|348aa|up_9|NZ_CP016294.1_414350_415394_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|832aa|up_8|NZ_CP016294.1_415406_417902_+	TIGR04510, mod_pep_cyc, putative peptide modification system cyclase	NA|85aa|up_7|NZ_CP016294.1_417908_418163_-	TIGR04509, mod_pep_NH_fam, putative modified peptide	NA|388aa|up_6|NZ_CP016294.1_418351_419515_+	TIGR04511, SagB_rel_DH_2, putative peptide maturation dehydrogenase	NA|616aa|up_5|NZ_CP016294.1_419511_421359_+	TIGR04510, mod_pep_cyc, putative peptide modification system cyclase	NA|661aa|up_4|NZ_CP016294.1_421402_423385_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|537aa|up_3|NZ_CP016294.1_423417_425028_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|388aa|up_2|NZ_CP016294.1_425038_426202_-	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|205aa|up_1|NZ_CP016294.1_426304_426919_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|173aa|up_0|NZ_CP016294.1_427024_427543_+	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|480aa|down_0|NZ_CP016294.1_427824_429264_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|286aa|down_1|NZ_CP016294.1_429351_430209_-	NA	NA|225aa|down_2|NZ_CP016294.1_430264_430939_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|367aa|down_3|NZ_CP016294.1_430935_432036_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|804aa|down_4|NZ_CP016294.1_432611_435023_+	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha	NA|340aa|down_5|NZ_CP016294.1_435217_436237_+	cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain	NA|138aa|down_6|NZ_CP016294.1_436341_436755_+	cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT)	NA|274aa|down_7|NZ_CP016294.1_436803_437625_+	PRK05333, PRK05333, NAD-dependent protein deacetylase	NA|370aa|down_8|NZ_CP016294.1_437839_438949_+	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|309aa|down_9|NZ_CP016294.1_438992_439919_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain
GCF_001704155.1_ASM170415v1	NZ_CP016294	Stenotrophomonas rhizophila strain QL-P4 chromosome, complete genome	2	621427-621810	1	CRT	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GATGCCGCCNTTGACNGT	18	0	0	NA	NA	NA	7	7	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|76aa|up_6|NZ_CP016294.1_608225_608453_+,NA|106aa|up_2|NZ_CP016294.1_612664_612982_-,NA|216aa|down_5|NZ_CP016294.1_628313_628961_+	NA|220aa|up_9|NZ_CP016294.1_605146_605806_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|267aa|up_8|NZ_CP016294.1_605969_606770_+	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|458aa|up_7|NZ_CP016294.1_606766_608140_+	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|76aa|up_6|NZ_CP016294.1_608225_608453_+	NA	NA|375aa|up_5|NZ_CP016294.1_608463_609588_-	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed	NA|488aa|up_4|NZ_CP016294.1_609654_611118_-	PRK11649, PRK11649, putative peptidase; Provisional	NA|404aa|up_3|NZ_CP016294.1_611285_612497_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|106aa|up_2|NZ_CP016294.1_612664_612982_-	NA	NA|153aa|up_1|NZ_CP016294.1_618920_619379_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|577aa|up_0|NZ_CP016294.1_619442_621173_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|457aa|down_0|NZ_CP016294.1_621940_623311_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|477aa|down_1|NZ_CP016294.1_623406_624837_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|231aa|down_2|NZ_CP016294.1_625016_625709_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|448aa|down_3|NZ_CP016294.1_625939_627283_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|244aa|down_4|NZ_CP016294.1_627477_628209_-	pfam06283, ThuA, Trehalose utilisation	NA|216aa|down_5|NZ_CP016294.1_628313_628961_+	NA	NA|1075aa|down_6|NZ_CP016294.1_629030_632255_-	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|314aa|down_7|NZ_CP016294.1_632697_633639_+	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II	NA|537aa|down_8|NZ_CP016294.1_633698_635309_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|194aa|down_9|NZ_CP016294.1_635442_636024_+	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional
GCF_001704155.1_ASM170415v1	NZ_CP016294	Stenotrophomonas rhizophila strain QL-P4 chromosome, complete genome	3	1656159-1656229	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GCCTGGTCCGGCCAACGGCCGGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|92aa|up_6|NZ_CP016294.1_1649986_1650262_-,NA|70aa|up_5|NZ_CP016294.1_1650383_1650593_+,NA|221aa|down_3|NZ_CP016294.1_1659765_1660428_+	NA|715aa|up_9|NZ_CP016294.1_1645809_1647954_+	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|110aa|up_8|NZ_CP016294.1_1648029_1648359_-	pfam11804, DUF3325, Protein of unknown function (DUF3325)	NA|545aa|up_7|NZ_CP016294.1_1648355_1649990_-	pfam03929, PepSY_TM, PepSY-associated TM region	NA|92aa|up_6|NZ_CP016294.1_1649986_1650262_-	NA	NA|70aa|up_5|NZ_CP016294.1_1650383_1650593_+	NA	NA|410aa|up_4|NZ_CP016294.1_1650589_1651819_+	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|133aa|up_3|NZ_CP016294.1_1651843_1652242_-	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|431aa|up_2|NZ_CP016294.1_1652384_1653677_-	COG2733, COG2733, Predicted membrane protein [Function unknown]	NA|293aa|up_1|NZ_CP016294.1_1653808_1654687_-	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain	NA|451aa|up_0|NZ_CP016294.1_1654739_1656092_-	PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional	NA|432aa|down_0|NZ_CP016294.1_1656325_1657621_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|154aa|down_1|NZ_CP016294.1_1657601_1658063_-	PRK00808, PRK00808, bacteriohemerythrin	NA|447aa|down_2|NZ_CP016294.1_1658132_1659473_-	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|221aa|down_3|NZ_CP016294.1_1659765_1660428_+	NA	NA|429aa|down_4|NZ_CP016294.1_1660533_1661820_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|446aa|down_5|NZ_CP016294.1_1662094_1663432_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|368aa|down_6|NZ_CP016294.1_1663566_1664670_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|442aa|down_7|NZ_CP016294.1_1664726_1666052_-	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family	NA|378aa|down_8|NZ_CP016294.1_1666498_1667632_+	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|304aa|down_9|NZ_CP016294.1_1667628_1668540_+	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional
GCF_001704155.1_ASM170415v1	NZ_CP016294	Stenotrophomonas rhizophila strain QL-P4 chromosome, complete genome	4	2713216-2713337	1	PILER-CR	no	csa3	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Type I-A	CGATCGGCTCGGGCGAT	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|84aa|up_3|NZ_CP016294.1_2710244_2710496_+,NA|344aa|up_0|NZ_CP016294.1_2711729_2712761_+,NA|142aa|down_1|NZ_CP016294.1_2714365_2714791_+,NA|165aa|down_6|NZ_CP016294.1_2721436_2721931_+	NA|396aa|up_9|NZ_CP016294.1_2704752_2705940_+	pfam12832, MFS_1_like, MFS_1 like family	NA|236aa|up_8|NZ_CP016294.1_2705954_2706662_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|80aa|up_7|NZ_CP016294.1_2706675_2706915_-	PRK00846, PRK00846, hypothetical protein; Provisional	NA|450aa|up_6|NZ_CP016294.1_2706907_2708257_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|327aa|up_5|NZ_CP016294.1_2708281_2709262_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|174aa|up_4|NZ_CP016294.1_2709346_2709868_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|84aa|up_3|NZ_CP016294.1_2710244_2710496_+	NA	NA|121aa|up_2|NZ_CP016294.1_2710498_2710861_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|292aa|up_1|NZ_CP016294.1_2710857_2711733_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|344aa|up_0|NZ_CP016294.1_2711729_2712761_+	NA	NA|196aa|down_0|NZ_CP016294.1_2713685_2714273_+	pfam11101, DUF2884, Protein of unknown function (DUF2884)	NA|142aa|down_1|NZ_CP016294.1_2714365_2714791_+	NA	NA|472aa|down_2|NZ_CP016294.1_2715323_2716739_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|444aa|down_3|NZ_CP016294.1_2717014_2718346_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_4|NZ_CP016294.1_2718381_2719749_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|478aa|down_5|NZ_CP016294.1_2719971_2721405_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|165aa|down_6|NZ_CP016294.1_2721436_2721931_+	NA	NA|944aa|down_7|NZ_CP016294.1_2722115_2724947_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|402aa|down_8|NZ_CP016294.1_2724989_2726195_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|479aa|down_9|NZ_CP016294.1_2726255_2727692_+	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated
GCF_001704155.1_ASM170415v1	NZ_CP016294	Stenotrophomonas rhizophila strain QL-P4 chromosome, complete genome	5	2766426-2766610	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GAAGCGCCGAAGGCTGTTGAAGC	23	0	0	NA	NA	NA	3	3	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA	NA|282aa|up_9|NZ_CP016294.1_2755048_2755894_+	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family	NA|204aa|up_8|NZ_CP016294.1_2755950_2756562_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|160aa|up_7|NZ_CP016294.1_2756713_2757193_+	cd00607, RNase_Sa, RNase_Sa	NA|138aa|up_6|NZ_CP016294.1_2757189_2757603_+	cd05141, Barstar_evA4336-like, Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp	NA|590aa|up_5|NZ_CP016294.1_2757608_2759378_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|200aa|up_4|NZ_CP016294.1_2759387_2759987_-	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	NA|114aa|up_3|NZ_CP016294.1_2760078_2760420_+	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|139aa|up_2|NZ_CP016294.1_2760425_2760842_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|270aa|up_1|NZ_CP016294.1_2760861_2761671_+	PRK04201, PRK04201, zinc transporter ZupT; Provisional	NA|326aa|up_0|NZ_CP016294.1_2762190_2763168_-	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|272aa|down_0|NZ_CP016294.1_2767142_2767958_-	cd09080, TDP2, Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains	NA|1045aa|down_1|NZ_CP016294.1_2767981_2771116_-	pfam00754, F5_F8_type_C, F5/8 type C domain	NA|279aa|down_2|NZ_CP016294.1_2771163_2772000_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_3|NZ_CP016294.1_2771996_2772878_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|438aa|down_4|NZ_CP016294.1_2772874_2774188_-	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold	NA|538aa|down_5|NZ_CP016294.1_2774197_2775811_-	COG5368, COG5368, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1020aa|down_6|NZ_CP016294.1_2775964_2779024_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|346aa|down_7|NZ_CP016294.1_2779104_2780142_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|90aa|down_8|NZ_CP016294.1_2780290_2780560_-	pfam01722, BolA, BolA-like protein	NA|100aa|down_9|NZ_CP016294.1_2780556_2780856_-	PRK11370, PRK11370, YciI family protein
