assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	1	336097-337065	1	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	1	4	336937-336960|336937-336960|336937-336960|336937-336960	NZ_CP016794.1_148607-148584|NZ_CP016794.1_1214954-1214931|NZ_CP016794.1_2422145-2422168|NZ_CP016794.1_2691126-2691103	NA	11	11	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP016794.1_331427_331610_-,NA	NA|561aa|up_9|NZ_CP016794.1_322834_324517_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP016794.1_324533_326729_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP016794.1_326842_327976_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP016794.1_327972_328593_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP016794.1_328689_329271_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP016794.1_329200_329926_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP016794.1_330015_330936_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP016794.1_330975_331404_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP016794.1_331427_331610_-	NA	NA|936aa|up_0|NZ_CP016794.1_331704_334512_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP016794.1_337723_339334_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP016794.1_339357_340266_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP016794.1_340489_342385_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP016794.1_342381_343998_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP016794.1_343994_347987_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP016794.1_347983_348292_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP016794.1_348294_349836_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP016794.1_349884_350178_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP016794.1_350207_350498_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP016794.1_350508_351396_+	pfam14011, ESX-1_EspG, EspG family
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	2	364823-365521	1	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	365111-365152|365186-365218	NZ_CP016794.1_373127-373168|NZ_CP016794.1_371942-371974	NA	10	10	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP016794.1_361835_362138_+,NA|161aa|down_1|NZ_CP016794.1_374916_375399_-,NA|410aa|down_5|NZ_CP016794.1_377515_378745_+	NA|262aa|up_9|NZ_CP016794.1_356530_357316_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP016794.1_357304_358108_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP016794.1_358117_359515_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP016794.1_359693_361469_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP016794.1_361611_361839_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP016794.1_361835_362138_+	NA	NA|74aa|up_3|NZ_CP016794.1_362185_362407_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP016794.1_362403_362829_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP016794.1_362964_363597_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP016794.1_363593_364502_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP016794.1_374257_374929_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP016794.1_374916_375399_-	NA	NA|239aa|down_2|NZ_CP016794.1_375456_376173_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP016794.1_376274_376931_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP016794.1_377000_377492_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP016794.1_377515_378745_+	NA	NA|621aa|down_6|NZ_CP016794.1_378899_380762_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP016794.1_380833_381220_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP016794.1_381222_381885_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP016794.1_381945_382830_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	3	629434-629571	2	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	629452-629469|629452-629469|629536-629553	NZ_CP016794.1_23824-23841|NZ_CP016794.1_1411198-1411215|NZ_CP016794.1_971407-971424	NA	3	3	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP016794.1_620188_620350_-,NA|478aa|up_0|NZ_CP016794.1_626449_627883_-,NA|450aa|down_2|NZ_CP016794.1_631206_632556_-,NA|93aa|down_5|NZ_CP016794.1_634086_634365_-	NA|325aa|up_9|NZ_CP016794.1_617958_618933_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP016794.1_618974_620192_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP016794.1_620188_620350_-	NA	NA|106aa|up_6|NZ_CP016794.1_620396_620714_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|623aa|up_5|NZ_CP016794.1_620860_622729_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP016794.1_622624_623632_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP016794.1_623713_624592_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP016794.1_624608_625403_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP016794.1_625399_626440_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP016794.1_626449_627883_-	NA	NA|211aa|down_0|NZ_CP016794.1_629894_630527_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP016794.1_630523_631186_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP016794.1_631206_632556_-	NA	NA|381aa|down_3|NZ_CP016794.1_632567_633710_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP016794.1_633724_634027_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP016794.1_634086_634365_-	NA	NA|418aa|down_6|NZ_CP016794.1_634361_635615_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP016794.1_635734_636121_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP016794.1_636183_637068_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP016794.1_637163_638066_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	4	690172-690248	2	CRISPRCasFinder	no	c2c9_V-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP016794.1_676067_676475_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP016794.1_676534_677221_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP016794.1_677374_680008_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP016794.1_680030_682418_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP016794.1_682555_683278_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP016794.1_683274_684072_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP016794.1_684073_684961_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP016794.1_684966_686181_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP016794.1_686177_687209_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP016794.1_687205_688651_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP016794.1_691383_692934_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP016794.1_692985_693378_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP016794.1_693374_693632_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP016794.1_693814_695050_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP016794.1_695300_695714_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP016794.1_695710_695947_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP016794.1_696050_696557_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP016794.1_696670_697141_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP016794.1_697184_697946_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP016794.1_698002_698314_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	5	1573827-1574899	3	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1574027-1574048	NZ_CP016794.1_1210047-1210026	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP016794.1_1565590_1565908_+,NA	NA|103aa|up_9|NZ_CP016794.1_1563105_1563414_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP016794.1_1563410_1565030_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP016794.1_1565590_1565908_+	NA	NA|209aa|up_6|NZ_CP016794.1_1566042_1566669_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP016794.1_1566734_1567067_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP016794.1_1567082_1568339_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP016794.1_1568466_1569678_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP016794.1_1569750_1571229_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP016794.1_1571225_1572611_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP016794.1_1572688_1573723_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP016794.1_1575753_1576155_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP016794.1_1576151_1576409_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP016794.1_1576491_1577451_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP016794.1_1577475_1578438_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP016794.1_1578571_1579174_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP016794.1_1579254_1581222_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP016794.1_1581239_1582064_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP016794.1_1582232_1582715_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP016794.1_1582786_1583611_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP016794.1_1583807_1584746_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	6	1638520-1638746	1	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_7|NZ_CP016794.1_1624768_1624882_-,NA|137aa|up_6|NZ_CP016794.1_1624931_1625342_-,NA|288aa|down_2|NZ_CP016794.1_1642488_1643352_+	NA|767aa|up_9|NZ_CP016794.1_1621435_1623736_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|up_8|NZ_CP016794.1_1623851_1624337_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_7|NZ_CP016794.1_1624768_1624882_-	NA	NA|137aa|up_6|NZ_CP016794.1_1624931_1625342_-	NA	NA|248aa|up_5|NZ_CP016794.1_1625358_1626102_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|305aa|up_4|NZ_CP016794.1_1626098_1627013_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_3|NZ_CP016794.1_1627065_1628610_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_2|NZ_CP016794.1_1628606_1629728_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_1|NZ_CP016794.1_1629744_1631847_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|up_0|NZ_CP016794.1_1636741_1637668_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP016794.1_1640189_1641455_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP016794.1_1641482_1642469_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP016794.1_1642488_1643352_+	NA	NA|311aa|down_3|NZ_CP016794.1_1643301_1644234_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP016794.1_1644345_1645131_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP016794.1_1645127_1646069_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP016794.1_1646224_1648000_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP016794.1_1648047_1648854_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP016794.1_1648850_1651391_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP016794.1_1651387_1652581_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	7	2072321-2072575	3	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2072402-2072419|2072402-2072419|2072492-2072509	NZ_CP016794.1_399422-399405|NZ_CP016794.1_605602-605585|NZ_CP016794.1_3441510-3441493	NA	5	5	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP016794.1_2071680_2071944_-,NA	NA|165aa|up_9|NZ_CP016794.1_2058030_2058525_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP016794.1_2058872_2059550_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP016794.1_2059908_2062734_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP016794.1_2062960_2063821_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP016794.1_2063861_2064728_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP016794.1_2064732_2066619_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP016794.1_2066634_2068668_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP016794.1_2068787_2071013_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP016794.1_2071288_2071684_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP016794.1_2071680_2071944_-	NA	NA|346aa|down_0|NZ_CP016794.1_2073712_2074750_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP016794.1_2074749_2076117_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP016794.1_2076290_2077727_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP016794.1_2077762_2079214_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP016794.1_2079243_2080194_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP016794.1_2080208_2080625_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP016794.1_2080902_2081325_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP016794.1_2081373_2081676_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP016794.1_2081672_2081987_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP016794.1_2081986_2083720_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	8	3115107-3116254	2,4,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	13,14,15	15	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP016794.1_3108386_3108641_-,NA|135aa|up_7|NZ_CP016794.1_3108788_3109193_+,NA|64aa|up_6|NZ_CP016794.1_3109189_3109381_+,NA|86aa|up_4|NZ_CP016794.1_3110967_3111225_+,NA|104aa|up_3|NZ_CP016794.1_3111329_3111641_+,NA|203aa|up_2|NZ_CP016794.1_3112060_3112669_+,NA	NA|92aa|up_9|NZ_CP016794.1_3107935_3108211_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP016794.1_3108386_3108641_-	NA	NA|135aa|up_7|NZ_CP016794.1_3108788_3109193_+	NA	NA|64aa|up_6|NZ_CP016794.1_3109189_3109381_+	NA	NA|385aa|up_5|NZ_CP016794.1_3109579_3110734_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP016794.1_3110967_3111225_+	NA	NA|104aa|up_3|NZ_CP016794.1_3111329_3111641_+	NA	NA|203aa|up_2|NZ_CP016794.1_3112060_3112669_+	NA	NA|470aa|up_1|NZ_CP016794.1_3112739_3114149_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP016794.1_3114145_3114958_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP016794.1_3116285_3117547_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm3gr7|237aa|down_1|NZ_CP016794.1_3117910_3118621_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_2|NZ_CP016794.1_3118630_3119005_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_3|NZ_CP016794.1_3119001_3121440_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_4|NZ_CP016794.1_3121436_3122381_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_5|NZ_CP016794.1_3122558_3123104_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_6|NZ_CP016794.1_3123375_3124260_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_7|NZ_CP016794.1_3124262_3125150_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|182aa|down_8|NZ_CP016794.1_3125454_3126000_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|down_9|NZ_CP016794.1_3125996_3126266_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	9	3659573-3659691	5	CRISPRCasFinder	no	cas3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Unclear	GCCCCTGTGAGTCGAGTGAGCGGAACGAAC	30	1	1	3659603-3659661	NZ_CP016794.1_3659666-3659724	NA	1	1	Unclear	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|138aa|down_6|NZ_CP016794.1_3665324_3665738_-,NA|126aa|down_7|NZ_CP016794.1_3665772_3666150_-	NA|719aa|up_9|NZ_CP016794.1_3646399_3648556_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|223aa|up_8|NZ_CP016794.1_3648552_3649221_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|395aa|up_7|NZ_CP016794.1_3649321_3650506_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|765aa|up_6|NZ_CP016794.1_3650510_3652805_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|up_5|NZ_CP016794.1_3652793_3653963_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|175aa|up_4|NZ_CP016794.1_3653987_3654512_-	PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase	NA|430aa|up_3|NZ_CP016794.1_3654508_3655798_-	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein	NA|273aa|up_2|NZ_CP016794.1_3655751_3656570_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|173aa|up_1|NZ_CP016794.1_3656524_3657043_-	pfam03703, bPH_2, Bacterial PH domain	NA|267aa|up_0|NZ_CP016794.1_3657085_3657886_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|223aa|down_0|NZ_CP016794.1_3659957_3660626_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|298aa|down_1|NZ_CP016794.1_3660666_3661560_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|144aa|down_2|NZ_CP016794.1_3661556_3661988_+	COG2166, sufE, Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]	NA|601aa|down_3|NZ_CP016794.1_3662095_3663898_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|262aa|down_4|NZ_CP016794.1_3663907_3664693_-	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed	NA|146aa|down_5|NZ_CP016794.1_3664689_3665127_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|138aa|down_6|NZ_CP016794.1_3665324_3665738_-	NA	NA|126aa|down_7|NZ_CP016794.1_3665772_3666150_-	NA	NA|450aa|down_8|NZ_CP016794.1_3666183_3667533_-	PRK08297, PRK08297, L-lysine aminotransferase; Provisional	NA|151aa|down_9|NZ_CP016794.1_3667583_3668036_-	smart00344, HTH_ASNC, helix_turn_helix ASNC type
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	10	3741861-3742437	5	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCNCCGNNGCCGCCG	25	0	0	NA	NA	NA	7	7	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP016794.1_3756669_3756957_-,NA|87aa|down_8|NZ_CP016794.1_3770076_3770337_-	NA|384aa|up_9|NZ_CP016794.1_3718193_3719345_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|282aa|up_8|NZ_CP016794.1_3719535_3720381_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_7|NZ_CP016794.1_3720855_3721296_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_6|NZ_CP016794.1_3721329_3722199_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_5|NZ_CP016794.1_3722219_3723230_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_4|NZ_CP016794.1_3723514_3724147_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_3|NZ_CP016794.1_3724213_3725443_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_2|NZ_CP016794.1_3725725_3727075_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_1|NZ_CP016794.1_3727086_3728226_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_0|NZ_CP016794.1_3728222_3728954_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|86aa|down_0|NZ_CP016794.1_3744539_3744797_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP016794.1_3745052_3754526_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP016794.1_3755151_3755598_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_3|NZ_CP016794.1_3755634_3756453_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP016794.1_3756669_3756957_-	NA	NA|265aa|down_5|NZ_CP016794.1_3768686_3769481_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NZ_CP016794.1_3769562_3769934_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_7|NZ_CP016794.1_3769831_3770242_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_8|NZ_CP016794.1_3770076_3770337_-	NA	NA|130aa|down_9|NZ_CP016794.1_3770451_3770841_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	11	3851842-3851931	6	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_8|NZ_CP016794.1_3843867_3844098_+,NA|121aa|up_7|NZ_CP016794.1_3844201_3844564_-,NA|56aa|up_3|NZ_CP016794.1_3848144_3848312_-,NA|73aa|up_1|NZ_CP016794.1_3849896_3850115_-,NA|121aa|down_0|NZ_CP016794.1_3852916_3853279_-,NA|52aa|down_2|NZ_CP016794.1_3855120_3855276_-,NA|52aa|down_3|NZ_CP016794.1_3855300_3855456_-,NA|238aa|down_6|NZ_CP016794.1_3859491_3860205_-	NA|409aa|up_9|NZ_CP016794.1_3842681_3843908_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_8|NZ_CP016794.1_3843867_3844098_+	NA	NA|121aa|up_7|NZ_CP016794.1_3844201_3844564_-	NA	NA|177aa|up_6|NZ_CP016794.1_3845522_3846053_+	pfam00823, PPE, PPE family	NA|252aa|up_5|NZ_CP016794.1_3846370_3847126_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|337aa|up_4|NZ_CP016794.1_3847209_3848220_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|56aa|up_3|NZ_CP016794.1_3848144_3848312_-	NA	NA|553aa|up_2|NZ_CP016794.1_3848245_3849904_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|73aa|up_1|NZ_CP016794.1_3849896_3850115_-	NA	NA|181aa|up_0|NZ_CP016794.1_3851005_3851548_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_CP016794.1_3852916_3853279_-	NA	NA|179aa|down_1|NZ_CP016794.1_3853441_3853978_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_CP016794.1_3855120_3855276_-	NA	NA|52aa|down_3|NZ_CP016794.1_3855300_3855456_-	NA	NA|461aa|down_4|NZ_CP016794.1_3856648_3858031_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_CP016794.1_3858068_3859490_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_CP016794.1_3859491_3860205_-	NA	NA|285aa|down_7|NZ_CP016794.1_3860215_3861070_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_CP016794.1_3861291_3863166_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_CP016794.1_3863187_3863664_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	12	3937932-3938590	6	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGNNCCGGCGGNNNCGGCGGC	25	2	4	3938320-3938357|3938320-3938357|3938320-3938357|3938383-3938402	NZ_CP016794.1_3942738-3942775|NZ_CP016794.1_3943023-3943060|NZ_CP016794.1_3943294-3943331|NZ_CP016794.1_4206079-4206060	NA	9	9	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP016794.1_3948393_3949233_+	NA|351aa|up_9|NZ_CP016794.1_3922803_3923856_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|up_8|NZ_CP016794.1_3923855_3925058_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_7|NZ_CP016794.1_3925077_3925920_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_6|NZ_CP016794.1_3925954_3926719_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_5|NZ_CP016794.1_3926944_3927898_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_4|NZ_CP016794.1_3927922_3928114_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_3|NZ_CP016794.1_3928328_3929531_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_2|NZ_CP016794.1_3929555_3930677_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_1|NZ_CP016794.1_3930747_3932256_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1393aa|up_0|NZ_CP016794.1_3932426_3936605_+	pfam00934, PE, PE family	NA|549aa|down_0|NZ_CP016794.1_3945786_3947433_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP016794.1_3947506_3948298_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP016794.1_3948393_3949233_+	NA	NA|399aa|down_3|NZ_CP016794.1_3949287_3950484_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP016794.1_3950512_3951223_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP016794.1_3951287_3952331_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP016794.1_3952483_3953395_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP016794.1_3953410_3954475_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP016794.1_3954491_3955676_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP016794.1_3955717_3956749_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	13	3944098-3944394	7	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCACCGGCGGCACCGG	21	1	1	3944119-3944187	NZ_CP016794.1_3944551-3944619	NA	4	4	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP016794.1_3948393_3949233_+	NA|351aa|up_9|NZ_CP016794.1_3922803_3923856_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|up_8|NZ_CP016794.1_3923855_3925058_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_7|NZ_CP016794.1_3925077_3925920_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_6|NZ_CP016794.1_3925954_3926719_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_5|NZ_CP016794.1_3926944_3927898_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_4|NZ_CP016794.1_3927922_3928114_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_3|NZ_CP016794.1_3928328_3929531_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_2|NZ_CP016794.1_3929555_3930677_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_1|NZ_CP016794.1_3930747_3932256_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1393aa|up_0|NZ_CP016794.1_3932426_3936605_+	pfam00934, PE, PE family	NA|549aa|down_0|NZ_CP016794.1_3945786_3947433_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP016794.1_3947506_3948298_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP016794.1_3948393_3949233_+	NA	NA|399aa|down_3|NZ_CP016794.1_3949287_3950484_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP016794.1_3950512_3951223_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP016794.1_3951287_3952331_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP016794.1_3952483_3953395_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP016794.1_3953410_3954475_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP016794.1_3954491_3955676_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP016794.1_3955717_3956749_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_001702435.1_ASM170243v1	NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	14	4105762-4105850	7	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP016794.1_4096357_4097128_-,NA|119aa|up_3|NZ_CP016794.1_4102253_4102610_+,NA|52aa|up_2|NZ_CP016794.1_4102709_4102865_+,NA|233aa|up_0|NZ_CP016794.1_4104866_4105565_-,NA|126aa|down_6|NZ_CP016794.1_4111085_4111463_+	NA|288aa|up_9|NZ_CP016794.1_4094739_4095603_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP016794.1_4096357_4097128_-	NA	NA|549aa|up_7|NZ_CP016794.1_4097124_4098771_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP016794.1_4098767_4099631_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP016794.1_4099623_4100550_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|539aa|up_4|NZ_CP016794.1_4100551_4102168_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP016794.1_4102253_4102610_+	NA	NA|52aa|up_2|NZ_CP016794.1_4102709_4102865_+	NA	NA|652aa|up_1|NZ_CP016794.1_4102875_4104831_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP016794.1_4104866_4105565_-	NA	NA|173aa|down_0|NZ_CP016794.1_4105910_4106429_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP016794.1_4106429_4107413_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP016794.1_4107405_4108599_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP016794.1_4108604_4109426_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP016794.1_4109557_4110241_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP016794.1_4110240_4110978_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP016794.1_4111085_4111463_+	NA	NA|225aa|down_7|NZ_CP016794.1_4111561_4112236_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP016794.1_4112341_4113136_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP016794.1_4113142_4113598_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
