assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	1	574978-575121	1	CRISPRCasFinder	no	RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	GGCTAACGTGTAACGGACTCTGGCAAAGAAGTCAGGCCCGGACTTTTCT	49	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|307aa|up_9|NZ_CP014924.1_560863_561784_-	COG0583, LysR, Transcriptional regulator [Transcription]	RT|461aa|up_8|NZ_CP014924.1_563565_564948_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|370aa|up_7|NZ_CP014924.1_565270_566380_-	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|267aa|up_6|NZ_CP014924.1_566381_567182_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|576aa|up_5|NZ_CP014924.1_567150_568878_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|423aa|up_4|NZ_CP014924.1_568874_570143_-	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases	NA|361aa|up_3|NZ_CP014924.1_570540_571623_-	cd01142, TroA_e, Periplasmic binding protein TroA_e	NA|366aa|up_2|NZ_CP014924.1_571713_572811_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|144aa|up_1|NZ_CP014924.1_573941_574373_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|84aa|up_0|NZ_CP014924.1_574530_574782_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	RT|461aa|down_0|NZ_CP014924.1_576652_578035_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|248aa|down_1|NZ_CP014924.1_578899_579643_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|125aa|down_2|NZ_CP014924.1_579629_580004_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|321aa|down_3|NZ_CP014924.1_580127_581090_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|132aa|down_4|NZ_CP014924.1_581194_581590_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|259aa|down_5|NZ_CP014924.1_582076_582853_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|283aa|down_6|NZ_CP014924.1_584859_585708_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	RT|461aa|down_7|NZ_CP014924.1_585907_587290_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|85aa|down_8|NZ_CP014924.1_587780_588035_-	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif	NA|1582aa|down_9|NZ_CP014924.1_588085_592831_-	pfam18483, Bact_lectin, Bacterial lectin
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	2	728832-728917	2	CRISPRCasFinder	no	cas14j	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	AATAAGAAACTTTAAGTATCTTA	23	0	0	NA	NA	NA	1	1	TypeV	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|53aa|down_3|NZ_CP014924.1_734592_734751_+	NA|457aa|up_9|NZ_CP014924.1_716505_717876_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|294aa|up_8|NZ_CP014924.1_717875_718757_+	cd01944, YegV_kinase_like, YegV-like sugar kinase	NA|157aa|up_7|NZ_CP014924.1_718969_719440_+	COG5015, COG5015, Uncharacterized conserved protein [Function unknown]	NA|463aa|up_6|NZ_CP014924.1_719553_720942_-	PRK06481, PRK06481, flavocytochrome c	NA|462aa|up_5|NZ_CP014924.1_721221_722607_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|317aa|up_4|NZ_CP014924.1_722943_723894_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|182aa|up_3|NZ_CP014924.1_724198_724744_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|390aa|up_2|NZ_CP014924.1_724757_725927_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|278aa|up_1|NZ_CP014924.1_726436_727270_-	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|501aa|up_0|NZ_CP014924.1_727316_728819_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|201aa|down_0|NZ_CP014924.1_728936_729539_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|650aa|down_1|NZ_CP014924.1_730329_732279_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|625aa|down_2|NZ_CP014924.1_732618_734493_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|53aa|down_3|NZ_CP014924.1_734592_734751_+	NA	NA|390aa|down_4|NZ_CP014924.1_737179_738349_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|277aa|down_5|NZ_CP014924.1_738568_739399_-	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|371aa|down_6|NZ_CP014924.1_740956_742069_-	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	cas14j|380aa|down_7|NZ_CP014924.1_742986_744126_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|142aa|down_8|NZ_CP014924.1_744427_744853_-	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]	NA|162aa|down_9|NZ_CP014924.1_745161_745647_-	cd02062, Nitro_FMN_reductase, nitroreductase family protein
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	3	986705-986824	3	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	CCTTTCTCGGCAGCTGTGCCGAAACGAGTTCCA	33	1	16	986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791|986738-986791	NZ_CP014924.1_315247-315194|NZ_CP014924.1_1547584-1547531|NZ_CP014924.1_2743553-2743500|NZ_CP014924.1_240551-240604|NZ_CP014924.1_2970131-2970184|NZ_CP014924.1_3259075-3259128|NZ_CP014924.1_3316345-3316398|NZ_CP014924.1_1889404-1889351|NZ_CP014924.1_2198949-2198896|NZ_CP014924.1_354639-354692|NZ_CP014924.1_438033-438086|NZ_CP014924.1_753139-753192|NZ_CP014924.1_913671-913724|NZ_CP014924.1_500635-500582|NZ_CP014924.1_1274682-1274629|NZ_CP014924.1_2644364-2644311	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|401aa|up_9|NZ_CP014924.1_975256_976459_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|156aa|up_8|NZ_CP014924.1_976461_976929_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|343aa|up_7|NZ_CP014924.1_977215_978244_+	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein	NA|255aa|up_6|NZ_CP014924.1_978271_979036_+	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|267aa|up_5|NZ_CP014924.1_979032_979833_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|287aa|up_4|NZ_CP014924.1_979829_980690_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|124aa|up_3|NZ_CP014924.1_982974_983346_+	COG4633, COG4633, Plastocyanin domain containing protein [General function prediction only]	NA|92aa|up_2|NZ_CP014924.1_983361_983637_+	pfam13473, Cupredoxin_1, Cupredoxin-like domain	NA|644aa|up_1|NZ_CP014924.1_983633_985565_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|261aa|up_0|NZ_CP014924.1_985622_986405_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|375aa|down_0|NZ_CP014924.1_986929_988054_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|397aa|down_1|NZ_CP014924.1_988408_989599_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|268aa|down_2|NZ_CP014924.1_989647_990451_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|718aa|down_3|NZ_CP014924.1_990557_992711_-	TIGR03715, cell_surface_protein_precursor, KxYKxGKxW signal peptide	NA|327aa|down_4|NZ_CP014924.1_993335_994316_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|368aa|down_5|NZ_CP014924.1_994339_995443_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|654aa|down_6|NZ_CP014924.1_995844_997806_-	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1	NA|222aa|down_7|NZ_CP014924.1_998542_999208_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|147aa|down_8|NZ_CP014924.1_999329_999770_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|291aa|down_9|NZ_CP014924.1_999833_1000706_-	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	4	1142634-1142739	4	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	TTGGCATCATAGCCGTAACGTGTTCC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|95aa|down_9|NZ_CP014924.1_1154216_1154501_+	NA|155aa|up_9|NZ_CP014924.1_1130289_1130754_-	pfam11457, DUF3021, Protein of unknown function (DUF3021)	NA|148aa|up_8|NZ_CP014924.1_1130750_1131194_-	smart00850, LytTR, LytTr DNA-binding domain	NA|303aa|up_7|NZ_CP014924.1_1131351_1132260_+	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|403aa|up_6|NZ_CP014924.1_1132727_1133936_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|338aa|up_5|NZ_CP014924.1_1133932_1134946_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|143aa|up_4|NZ_CP014924.1_1135610_1136039_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|235aa|up_3|NZ_CP014924.1_1136048_1136753_+	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|463aa|up_2|NZ_CP014924.1_1138036_1139425_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|up_1|NZ_CP014924.1_1139821_1140274_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|675aa|up_0|NZ_CP014924.1_1140373_1142398_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|471aa|down_0|NZ_CP014924.1_1142935_1144348_+	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|157aa|down_1|NZ_CP014924.1_1144400_1144871_-	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|79aa|down_2|NZ_CP014924.1_1145646_1145883_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|187aa|down_3|NZ_CP014924.1_1145908_1146469_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|96aa|down_4|NZ_CP014924.1_1146511_1146799_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|891aa|down_5|NZ_CP014924.1_1147210_1149883_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|649aa|down_6|NZ_CP014924.1_1150188_1152135_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|392aa|down_7|NZ_CP014924.1_1152153_1153329_-	PRK00064, recF, recombination protein F; Reviewed	NA|82aa|down_8|NZ_CP014924.1_1153331_1153577_-	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA	NA|95aa|down_9|NZ_CP014924.1_1154216_1154501_+	NA
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	5	1334947-1335077	5	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	GCTTACATGCAGCTTTCTGTTTTCCGGAACTCGTTT	36	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|101aa|up_7|NZ_CP014924.1_1325130_1325433_+,NA	NA|211aa|up_9|NZ_CP014924.1_1323790_1324423_+	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|161aa|up_8|NZ_CP014924.1_1324484_1324967_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|101aa|up_7|NZ_CP014924.1_1325130_1325433_+	NA	NA|373aa|up_6|NZ_CP014924.1_1325523_1326642_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|496aa|up_5|NZ_CP014924.1_1326996_1328484_+	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter	NA|259aa|up_4|NZ_CP014924.1_1328673_1329450_+	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs	NA|514aa|up_3|NZ_CP014924.1_1330144_1331686_+	cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases	NA|272aa|up_2|NZ_CP014924.1_1331822_1332638_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|337aa|up_1|NZ_CP014924.1_1332759_1333770_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|285aa|up_0|NZ_CP014924.1_1334010_1334865_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|145aa|down_0|NZ_CP014924.1_1335283_1335718_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|146aa|down_1|NZ_CP014924.1_1335734_1336172_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|163aa|down_2|NZ_CP014924.1_1336230_1336719_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|465aa|down_3|NZ_CP014924.1_1336923_1338318_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|416aa|down_4|NZ_CP014924.1_1338743_1339991_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|195aa|down_5|NZ_CP014924.1_1340208_1340793_+	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|458aa|down_6|NZ_CP014924.1_1341211_1342585_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|207aa|down_7|NZ_CP014924.1_1342691_1343312_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|199aa|down_8|NZ_CP014924.1_1343713_1344310_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|240aa|down_9|NZ_CP014924.1_1345354_1346074_-	pfam04474, DUF554, Protein of unknown function (DUF554)
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	6	1348152-1348287	6	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	GCATTTTTGCCAGAGTTGGCTTACATGCAGCTTTCTGTTTT	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|257aa|down_7|NZ_CP014924.1_1355969_1356740_+	NA|163aa|up_9|NZ_CP014924.1_1336230_1336719_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|465aa|up_8|NZ_CP014924.1_1336923_1338318_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|416aa|up_7|NZ_CP014924.1_1338743_1339991_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|195aa|up_6|NZ_CP014924.1_1340208_1340793_+	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|458aa|up_5|NZ_CP014924.1_1341211_1342585_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|207aa|up_4|NZ_CP014924.1_1342691_1343312_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|199aa|up_3|NZ_CP014924.1_1343713_1344310_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|240aa|up_2|NZ_CP014924.1_1345354_1346074_-	pfam04474, DUF554, Protein of unknown function (DUF554)	NA|379aa|up_1|NZ_CP014924.1_1346417_1347554_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|138aa|up_0|NZ_CP014924.1_1347576_1347990_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|157aa|down_0|NZ_CP014924.1_1348374_1348845_+	PRK02487, PRK02487, heme-degrading domain-containing protein	NA|200aa|down_1|NZ_CP014924.1_1350229_1350829_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|325aa|down_2|NZ_CP014924.1_1351029_1352004_+	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)	NA|182aa|down_3|NZ_CP014924.1_1352416_1352962_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|279aa|down_4|NZ_CP014924.1_1353102_1353939_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|318aa|down_5|NZ_CP014924.1_1353951_1354905_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|280aa|down_6|NZ_CP014924.1_1354976_1355816_-	PRK06940, PRK06940, short chain dehydrogenase; Provisional	NA|257aa|down_7|NZ_CP014924.1_1355969_1356740_+	NA	NA|429aa|down_8|NZ_CP014924.1_1359231_1360518_-	PRK00077, eno, enolase; Provisional	NA|83aa|down_9|NZ_CP014924.1_1360793_1361042_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	7	1579920-1580813	7,1,1	CRISPRCasFinder,CRT,PILER-CR	no	RT,cas9,cas1,cas2,csn2	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Type II-C,Type II-B,Type II-A	GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC,GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC,GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	36,36,36	0	0	NA	NA	NA:NA:NA	13,13,4	13	TypeII-C,TypeII-B,TypeII-A	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|629aa|up_9|NZ_CP014924.1_1565015_1566902_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|575aa|up_8|NZ_CP014924.1_1566901_1568626_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	RT|461aa|up_7|NZ_CP014924.1_1569386_1570769_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|188aa|up_6|NZ_CP014924.1_1570844_1571408_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|186aa|up_5|NZ_CP014924.1_1571723_1572281_-	PRK13690, PRK13690, hypothetical protein; Provisional	NA|299aa|up_4|NZ_CP014924.1_1572519_1573416_-	cd01020, TroA_b, Metal binding protein TroA_b	cas9|1369aa|up_3|NZ_CP014924.1_1573716_1577823_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|309aa|up_2|NZ_CP014924.1_1578020_1578947_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|107aa|up_1|NZ_CP014924.1_1578909_1579230_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP014924.1_1579226_1579892_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|84aa|down_0|NZ_CP014924.1_1581155_1581407_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|241aa|down_1|NZ_CP014924.1_1581561_1582284_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|242aa|down_2|NZ_CP014924.1_1582390_1583116_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|674aa|down_3|NZ_CP014924.1_1583115_1585137_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|236aa|down_4|NZ_CP014924.1_1586231_1586939_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|256aa|down_5|NZ_CP014924.1_1587022_1587790_+	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|220aa|down_6|NZ_CP014924.1_1588028_1588688_+	cd19364, TenA_C_BsTenA-like, TenA_C proteins similar to Bacillus subtilis TenA	NA|163aa|down_7|NZ_CP014924.1_1589243_1589732_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|377aa|down_8|NZ_CP014924.1_1590206_1591337_+	PRK06233, PRK06233, vitamin B12 independent methionine synthase	NA|274aa|down_9|NZ_CP014924.1_1591731_1592553_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	8	1633604-1633723	8	CRISPRCasFinder	no	RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	CCTTCCTGAACGCGTTTCCACTAGAGAAAA	30	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|332aa|up_9|NZ_CP014924.1_1620230_1621226_+	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase	RT|461aa|up_8|NZ_CP014924.1_1621703_1623086_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|473aa|up_7|NZ_CP014924.1_1623579_1624998_+	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|315aa|up_6|NZ_CP014924.1_1625347_1626292_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|345aa|up_5|NZ_CP014924.1_1626855_1627890_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|405aa|up_4|NZ_CP014924.1_1627913_1629128_+	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|250aa|up_3|NZ_CP014924.1_1629141_1629891_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|380aa|up_2|NZ_CP014924.1_1629899_1631039_+	PRK02936, argD, acetylornithine transaminase	NA|90aa|up_1|NZ_CP014924.1_1631880_1632150_+	PRK00194, PRK00194, ACT domain-containing protein	NA|448aa|up_0|NZ_CP014924.1_1632159_1633503_+	PRK05313, PRK05313, hypothetical protein; Provisional	NA|453aa|down_0|NZ_CP014924.1_1633920_1635279_-	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like	NA|130aa|down_1|NZ_CP014924.1_1637107_1637497_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|156aa|down_2|NZ_CP014924.1_1637531_1637999_+	cd08437, PBP2_MleR, The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold	NA|149aa|down_3|NZ_CP014924.1_1638281_1638728_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|486aa|down_4|NZ_CP014924.1_1639131_1640589_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|244aa|down_5|NZ_CP014924.1_1640585_1641317_+	pfam16069, DUF4811, Domain of unknown function (DUF4811)	NA|331aa|down_6|NZ_CP014924.1_1642449_1643442_+	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|367aa|down_7|NZ_CP014924.1_1643656_1644757_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|312aa|down_8|NZ_CP014924.1_1644737_1645673_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|283aa|down_9|NZ_CP014924.1_1645672_1646521_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	9	1724429-1724566	9	CRISPRCasFinder	no	RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	CAGAGTTGGCTTACATGCAGCTTTCTGTTTTCCGAAACGCGTTT	44	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|144aa|up_9|NZ_CP014924.1_1711956_1712388_+,NA|126aa|up_8|NZ_CP014924.1_1713274_1713652_+,NA|136aa|up_0|NZ_CP014924.1_1723844_1724252_-,NA	NA|144aa|up_9|NZ_CP014924.1_1711956_1712388_+	NA	NA|126aa|up_8|NZ_CP014924.1_1713274_1713652_+	NA	RT|461aa|up_7|NZ_CP014924.1_1714211_1715594_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|160aa|up_6|NZ_CP014924.1_1715681_1716161_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|541aa|up_5|NZ_CP014924.1_1716384_1718007_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|571aa|up_4|NZ_CP014924.1_1718522_1720235_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|184aa|up_3|NZ_CP014924.1_1720337_1720889_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|319aa|up_2|NZ_CP014924.1_1721099_1722056_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|401aa|up_1|NZ_CP014924.1_1722242_1723445_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|136aa|up_0|NZ_CP014924.1_1723844_1724252_-	NA	NA|215aa|down_0|NZ_CP014924.1_1724886_1725531_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|262aa|down_1|NZ_CP014924.1_1725663_1726449_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|159aa|down_2|NZ_CP014924.1_1726603_1727080_+	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|181aa|down_3|NZ_CP014924.1_1727172_1727715_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|179aa|down_4|NZ_CP014924.1_1727774_1728311_-	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	RT|461aa|down_5|NZ_CP014924.1_1728910_1730293_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|362aa|down_6|NZ_CP014924.1_1730914_1732000_+	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|304aa|down_7|NZ_CP014924.1_1732144_1733056_+	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|187aa|down_8|NZ_CP014924.1_1733108_1733669_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|219aa|down_9|NZ_CP014924.1_1734622_1735279_+	COG3358, COG3358, Uncharacterized conserved protein [Function unknown]
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	10	1801129-1801219	10	CRISPRCasFinder	no	RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	GTGTTCCCCGCATGTGCGGGGGTGATCCCA	30	0	0	NA	NA	I-C,I-E,II-B	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|140aa|up_9|NZ_CP014924.1_1787908_1788328_+,NA|50aa|up_7|NZ_CP014924.1_1790296_1790446_+,NA|101aa|down_1|NZ_CP014924.1_1802763_1803066_-,NA|83aa|down_4|NZ_CP014924.1_1807195_1807444_+	NA|140aa|up_9|NZ_CP014924.1_1787908_1788328_+	NA	NA|435aa|up_8|NZ_CP014924.1_1788573_1789878_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|50aa|up_7|NZ_CP014924.1_1790296_1790446_+	NA	NA|208aa|up_6|NZ_CP014924.1_1790505_1791129_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|399aa|up_5|NZ_CP014924.1_1791256_1792453_-	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|210aa|up_4|NZ_CP014924.1_1792532_1793162_+	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family	RT|461aa|up_3|NZ_CP014924.1_1793743_1795126_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|374aa|up_2|NZ_CP014924.1_1798018_1799140_+	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase	NA|111aa|up_1|NZ_CP014924.1_1799313_1799646_+	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]	NA|429aa|up_0|NZ_CP014924.1_1799740_1801027_+	TIGR03173, pbuX, xanthine permease	NA|335aa|down_0|NZ_CP014924.1_1801637_1802642_-	NF033202, GW_glycos_SH3, GW domain-containing glycosaminoglycan-binding protein	NA|101aa|down_1|NZ_CP014924.1_1802763_1803066_-	NA	NA|302aa|down_2|NZ_CP014924.1_1804955_1805861_+	PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional	NA|247aa|down_3|NZ_CP014924.1_1805889_1806630_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|83aa|down_4|NZ_CP014924.1_1807195_1807444_+	NA	NA|567aa|down_5|NZ_CP014924.1_1807727_1809428_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|108aa|down_6|NZ_CP014924.1_1809592_1809916_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|593aa|down_7|NZ_CP014924.1_1809933_1811712_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|576aa|down_8|NZ_CP014924.1_1811815_1813543_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|965aa|down_9|NZ_CP014924.1_1813637_1816532_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	11	1817290-1817500	2,11,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Type I-E	GTATTCCCCACGCATGTGGGGGTGATCCC,GTATTCCCCACGCATGTGGGGGTGATCC,GTATTCCCCACGCATGTGGGGGTGATCC	29,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	2,3,3	3	TypeI-E	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|101aa|up_9|NZ_CP014924.1_1802763_1803066_-,NA|83aa|up_6|NZ_CP014924.1_1807195_1807444_+,NA	NA|101aa|up_9|NZ_CP014924.1_1802763_1803066_-	NA	NA|302aa|up_8|NZ_CP014924.1_1804955_1805861_+	PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional	NA|247aa|up_7|NZ_CP014924.1_1805889_1806630_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|83aa|up_6|NZ_CP014924.1_1807195_1807444_+	NA	NA|567aa|up_5|NZ_CP014924.1_1807727_1809428_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|108aa|up_4|NZ_CP014924.1_1809592_1809916_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|593aa|up_3|NZ_CP014924.1_1809933_1811712_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|576aa|up_2|NZ_CP014924.1_1811815_1813543_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|965aa|up_1|NZ_CP014924.1_1813637_1816532_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|138aa|up_0|NZ_CP014924.1_1816515_1816929_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	cas8e|574aa|down_0|NZ_CP014924.1_1820876_1822598_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|200aa|down_1|NZ_CP014924.1_1822604_1823204_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|357aa|down_2|NZ_CP014924.1_1823209_1824280_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_3|NZ_CP014924.1_1824260_1824977_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|down_4|NZ_CP014924.1_1824989_1825658_+	pfam08798, CRISPR_assoc, CRISPR associated protein	NA|220aa|down_5|NZ_CP014924.1_1826583_1827243_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|477aa|down_6|NZ_CP014924.1_1827385_1828816_-	PRK07121, PRK07121, FAD-binding protein	NA|180aa|down_7|NZ_CP014924.1_1829713_1830253_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|492aa|down_8|NZ_CP014924.1_1830369_1831845_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|601aa|down_9|NZ_CP014924.1_1832112_1833915_+	PRK07121, PRK07121, FAD-binding protein
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	12	1825740-1826134	3,12,3	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Type I-E	GTATTCCCCACGCATGTGGGGGTGATCC,GTATTCCCCACGCATGTGGGGGTGATCC,GTATTCCCCACGCATGTGGG	28,28,20	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:NA	5,6,6	6	TypeI-E	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|108aa|up_9|NZ_CP014924.1_1809592_1809916_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|593aa|up_8|NZ_CP014924.1_1809933_1811712_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|576aa|up_7|NZ_CP014924.1_1811815_1813543_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|965aa|up_6|NZ_CP014924.1_1813637_1816532_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|138aa|up_5|NZ_CP014924.1_1816515_1816929_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	cas8e|574aa|up_4|NZ_CP014924.1_1820876_1822598_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|200aa|up_3|NZ_CP014924.1_1822604_1823204_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|357aa|up_2|NZ_CP014924.1_1823209_1824280_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_1|NZ_CP014924.1_1824260_1824977_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|up_0|NZ_CP014924.1_1824989_1825658_+	pfam08798, CRISPR_assoc, CRISPR associated protein	NA|220aa|down_0|NZ_CP014924.1_1826583_1827243_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|477aa|down_1|NZ_CP014924.1_1827385_1828816_-	PRK07121, PRK07121, FAD-binding protein	NA|180aa|down_2|NZ_CP014924.1_1829713_1830253_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|492aa|down_3|NZ_CP014924.1_1830369_1831845_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|601aa|down_4|NZ_CP014924.1_1832112_1833915_+	PRK07121, PRK07121, FAD-binding protein	NA|680aa|down_5|NZ_CP014924.1_1833949_1835989_+	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|462aa|down_6|NZ_CP014924.1_1836086_1837472_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|192aa|down_7|NZ_CP014924.1_1837486_1838062_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|274aa|down_8|NZ_CP014924.1_1838457_1839279_+	COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	NA|430aa|down_9|NZ_CP014924.1_1839377_1840667_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	13	2435552-2435687	13	CRISPRCasFinder	no	RT,DEDDh	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	GCCTTGCGGAACGCGTTACGGCACGGATGCCTAGAAAG	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|48aa|down_9|NZ_CP014924.1_2447237_2447381_+	NA|513aa|up_9|NZ_CP014924.1_2425735_2427274_+	cd01031, EriC, ClC chloride channel EriC	NA|79aa|up_8|NZ_CP014924.1_2427367_2427604_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|250aa|up_7|NZ_CP014924.1_2427691_2428441_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|807aa|up_6|NZ_CP014924.1_2428459_2430880_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|158aa|up_5|NZ_CP014924.1_2430907_2431381_+	pfam01668, SmpB, SmpB protein	NA|196aa|up_4|NZ_CP014924.1_2431935_2432523_-	COG4894, COG4894, Uncharacterized conserved protein [Function unknown]	NA|237aa|up_3|NZ_CP014924.1_2432640_2433351_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|330aa|up_2|NZ_CP014924.1_2433408_2434398_+	PRK09653, eutD, phosphotransacetylase	NA|160aa|up_1|NZ_CP014924.1_2434485_2434965_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|166aa|up_0|NZ_CP014924.1_2434954_2435452_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	DEDDh|178aa|down_0|NZ_CP014924.1_2435992_2436526_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|255aa|down_1|NZ_CP014924.1_2436566_2437331_-	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases	NA|303aa|down_2|NZ_CP014924.1_2437477_2438386_+	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|707aa|down_3|NZ_CP014924.1_2438406_2440527_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|227aa|down_4|NZ_CP014924.1_2440717_2441398_-	pfam07099, DUF1361, Protein of unknown function (DUF1361)	NA|284aa|down_5|NZ_CP014924.1_2441573_2442425_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|324aa|down_6|NZ_CP014924.1_2442421_2443393_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|down_7|NZ_CP014924.1_2443418_2444774_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|606aa|down_8|NZ_CP014924.1_2444992_2446810_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|48aa|down_9|NZ_CP014924.1_2447237_2447381_+	NA
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	14	2685070-2685199	14	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	TAGAGAGCAGGGGTGCTGGATGAAATGTCTGGGTC	35	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|297aa|down_1|NZ_CP014924.1_2687502_2688393_+	NA|97aa|up_9|NZ_CP014924.1_2676359_2676650_+	pfam09902, DUF2129, Uncharacterized protein conserved in bacteria (DUF2129)	NA|191aa|up_8|NZ_CP014924.1_2676650_2677223_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|157aa|up_7|NZ_CP014924.1_2677215_2677686_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|350aa|up_6|NZ_CP014924.1_2677699_2678749_+	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]	NA|215aa|up_5|NZ_CP014924.1_2679535_2680180_+	TIGR01259, ComE_operon_protein_1, comEA protein	NA|162aa|up_4|NZ_CP014924.1_2680282_2680768_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|732aa|up_3|NZ_CP014924.1_2680814_2683010_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|337aa|up_2|NZ_CP014924.1_2683024_2684035_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|88aa|up_1|NZ_CP014924.1_2684099_2684363_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|90aa|up_0|NZ_CP014924.1_2684629_2684899_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|594aa|down_0|NZ_CP014924.1_2685658_2687440_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|297aa|down_1|NZ_CP014924.1_2687502_2688393_+	NA	NA|396aa|down_2|NZ_CP014924.1_2688593_2689781_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|439aa|down_3|NZ_CP014924.1_2689996_2691313_+	PRK01490, tig, trigger factor; Provisional	NA|418aa|down_4|NZ_CP014924.1_2691497_2692751_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|200aa|down_5|NZ_CP014924.1_2692945_2693545_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|102aa|down_6|NZ_CP014924.1_2693541_2693847_+	cd11541, NTP-PPase_u4, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|308aa|down_7|NZ_CP014924.1_2693931_2694855_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|435aa|down_8|NZ_CP014924.1_2695198_2696503_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|461aa|down_9|NZ_CP014924.1_2696502_2697885_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	15	2707476-2707612	15	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	GTAGCCAAGAAAGGCGCGGCCTTCAACCAGATGTGGATTTGGT	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|57aa|up_5|NZ_CP014924.1_2699067_2699238_-,NA|257aa|down_0|NZ_CP014924.1_2707831_2708602_-,NA|89aa|down_1|NZ_CP014924.1_2708616_2708883_-	NA|308aa|up_9|NZ_CP014924.1_2693931_2694855_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|435aa|up_8|NZ_CP014924.1_2695198_2696503_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|461aa|up_7|NZ_CP014924.1_2696502_2697885_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|200aa|up_6|NZ_CP014924.1_2697996_2698596_+	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|57aa|up_5|NZ_CP014924.1_2699067_2699238_-	NA	NA|496aa|up_4|NZ_CP014924.1_2699471_2700959_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_3|NZ_CP014924.1_2700966_2701698_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|601aa|up_2|NZ_CP014924.1_2702167_2703970_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|433aa|up_1|NZ_CP014924.1_2704081_2705380_+	PRK12297, obgE, GTPase CgtA; Reviewed	NA|639aa|up_0|NZ_CP014924.1_2705432_2707349_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|257aa|down_0|NZ_CP014924.1_2707831_2708602_-	NA	NA|89aa|down_1|NZ_CP014924.1_2708616_2708883_-	NA	NA|315aa|down_2|NZ_CP014924.1_2709142_2710087_+	TIGR02651, Ribonuclease_Z, ribonuclease Z	NA|119aa|down_3|NZ_CP014924.1_2710100_2710457_+	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown]	NA|776aa|down_4|NZ_CP014924.1_2710453_2712781_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|173aa|down_5|NZ_CP014924.1_2712796_2713315_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|123aa|down_6|NZ_CP014924.1_2714120_2714489_-	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|138aa|down_7|NZ_CP014924.1_2714424_2714838_-	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|183aa|down_8|NZ_CP014924.1_2715472_2716021_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|148aa|down_9|NZ_CP014924.1_2716308_2716752_+	cd00293, USP_Like, Usp: Universal stress protein family
GCF_001702195.1_ASM170219v1	NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	16	2931557-2931661	16	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	GCCTTGCGGAGCACGTTTGGTCTCGAGGACAGTAGAAA	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|163aa|up_9|NZ_CP014924.1_2922220_2922709_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|230aa|up_8|NZ_CP014924.1_2922971_2923661_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|280aa|up_7|NZ_CP014924.1_2923811_2924651_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|303aa|up_6|NZ_CP014924.1_2924836_2925745_+	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|204aa|up_5|NZ_CP014924.1_2925757_2926369_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	NA|73aa|up_4|NZ_CP014924.1_2926399_2926618_+	PRK13672, PRK13672, hypothetical protein; Provisional	NA|285aa|up_3|NZ_CP014924.1_2926634_2927489_+	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF	NA|257aa|up_2|NZ_CP014924.1_2927481_2928252_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|290aa|up_1|NZ_CP014924.1_2928310_2929180_+	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|701aa|up_0|NZ_CP014924.1_2929350_2931453_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|108aa|down_0|NZ_CP014924.1_2931872_2932196_-	cd11523, NTP-PPase, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|304aa|down_1|NZ_CP014924.1_2932480_2933392_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|175aa|down_2|NZ_CP014924.1_2933413_2933938_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|472aa|down_3|NZ_CP014924.1_2933968_2935384_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|354aa|down_4|NZ_CP014924.1_2935562_2936624_-	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)	NA|293aa|down_5|NZ_CP014924.1_2936919_2937798_+	cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX	NA|225aa|down_6|NZ_CP014924.1_2938259_2938934_-	PRK14392, PRK14392, glycerol-3-phosphate acyltransferase	NA|663aa|down_7|NZ_CP014924.1_2939023_2941012_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|814aa|down_8|NZ_CP014924.1_2941029_2943471_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|323aa|down_9|NZ_CP014924.1_2943572_2944541_+	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_001702195.1_ASM170219v1	NZ_CP014926	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-2, complete sequence	1	8082-8236	1	CRISPRCasFinder	no	RT	RT	Unclear	AATCCCTTGATACAAGCAGACTTCCGAAAAACGGA	35	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|49aa|up_6|NZ_CP014926.1_2555_2702_+,NA|106aa|up_5|NZ_CP014926.1_2837_3155_+,NA|68aa|up_0|NZ_CP014926.1_6543_6747_+,NA|135aa|down_1|NZ_CP014926.1_9306_9711_+,NA|30aa|down_6|NZ_CP014926.1_13685_13775_-,NA|88aa|down_7|NZ_CP014926.1_14335_14599_+	NA|241aa|up_9|NZ_CP014926.1_678_1401_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|83aa|up_8|NZ_CP014926.1_1528_1777_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|227aa|up_7|NZ_CP014926.1_1808_2489_+	pfam08346, AntA, AntA/AntB antirepressor	NA|49aa|up_6|NZ_CP014926.1_2555_2702_+	NA	NA|106aa|up_5|NZ_CP014926.1_2837_3155_+	NA	NA|278aa|up_4|NZ_CP014926.1_3147_3981_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|280aa|up_3|NZ_CP014926.1_3916_4756_+	pfam12684, DUF3799, PDDEXK-like domain of unknown function (DUF3799)	NA|281aa|up_2|NZ_CP014926.1_4850_5693_+	pfam14297, DUF4373, Domain of unknown function (DUF4373)	NA|262aa|up_1|NZ_CP014926.1_5703_6489_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|68aa|up_0|NZ_CP014926.1_6543_6747_+	NA	NA|94aa|down_0|NZ_CP014926.1_9035_9317_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|135aa|down_1|NZ_CP014926.1_9306_9711_+	NA	NA|227aa|down_2|NZ_CP014926.1_9800_10481_-	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family	NA|143aa|down_3|NZ_CP014926.1_10485_10914_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|559aa|down_4|NZ_CP014926.1_11226_12903_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|237aa|down_5|NZ_CP014926.1_12922_13633_+	cd17299, acetolactate_decarboxylase, alpha-acetolactate decarboxylase	NA|30aa|down_6|NZ_CP014926.1_13685_13775_-	NA	NA|88aa|down_7|NZ_CP014926.1_14335_14599_+	NA	RT|461aa|down_8|NZ_CP014926.1_15158_16541_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|195aa|down_9|NZ_CP014926.1_17588_18173_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain
GCF_001702195.1_ASM170219v1	NZ_CP014927	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence	1	35481-35637	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGT	37	1	2	35518-35600|35518-35600	NZ_CP014932.1_38941-38859|NZ_CP014928.1_27324-27242	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|70aa|up_9|NZ_CP014927.1_25015_25225_+,NA|94aa|up_8|NZ_CP014927.1_25244_25526_+,NA|92aa|up_0|NZ_CP014927.1_34248_34524_+,NA|62aa|down_1|NZ_CP014927.1_36897_37083_+,NA|93aa|down_2|NZ_CP014927.1_37198_37477_-,NA|76aa|down_3|NZ_CP014927.1_37499_37727_-	NA|70aa|up_9|NZ_CP014927.1_25015_25225_+	NA	NA|94aa|up_8|NZ_CP014927.1_25244_25526_+	NA	NA|263aa|up_7|NZ_CP014927.1_26805_27593_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|429aa|up_6|NZ_CP014927.1_29481_30768_-	PRK00077, eno, enolase; Provisional	NA|133aa|up_5|NZ_CP014927.1_31078_31477_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|77aa|up_4|NZ_CP014927.1_31470_31701_+	PRK14214, PRK14214, fluoride efflux transporter CrcB	NA|245aa|up_3|NZ_CP014927.1_31861_32596_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|84aa|up_2|NZ_CP014927.1_32689_32941_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|350aa|up_1|NZ_CP014927.1_33196_34246_+	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|92aa|up_0|NZ_CP014927.1_34248_34524_+	NA	NA|94aa|down_0|NZ_CP014927.1_36569_36851_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|62aa|down_1|NZ_CP014927.1_36897_37083_+	NA	NA|93aa|down_2|NZ_CP014927.1_37198_37477_-	NA	NA|76aa|down_3|NZ_CP014927.1_37499_37727_-	NA	NA|687aa|down_4|NZ_CP014927.1_37978_40039_+	pfam03389, MobA_MobL, MobA/MobL family	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_001702195.1_ASM170219v1	NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	1	6788-6889	1	CRISPRCasFinder	no			Orphan	GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTT	36	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|72aa|up_7|NZ_CP014928.1_57_273_-,NA|70aa|up_4|NZ_CP014928.1_4361_4571_+,NA|93aa|up_3|NZ_CP014928.1_4593_4872_+,NA|62aa|up_1|NZ_CP014928.1_5538_5724_-,NA|127aa|down_0|NZ_CP014928.1_7868_8249_-,NA|100aa|down_1|NZ_CP014928.1_8312_8612_-	NA|NA	NA	NA|NA	NA	NA|72aa|up_7|NZ_CP014928.1_57_273_-	NA	NA|535aa|up_6|NZ_CP014928.1_394_1999_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|688aa|up_5|NZ_CP014928.1_2027_4091_-	pfam03389, MobA_MobL, MobA/MobL family	NA|70aa|up_4|NZ_CP014928.1_4361_4571_+	NA	NA|93aa|up_3|NZ_CP014928.1_4593_4872_+	NA	NA|218aa|up_2|NZ_CP014928.1_4888_5542_-	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|62aa|up_1|NZ_CP014928.1_5538_5724_-	NA	NA|94aa|up_0|NZ_CP014928.1_5770_6052_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|127aa|down_0|NZ_CP014928.1_7868_8249_-	NA	NA|100aa|down_1|NZ_CP014928.1_8312_8612_-	NA	NA|256aa|down_2|NZ_CP014928.1_8613_9381_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|187aa|down_3|NZ_CP014928.1_9462_10023_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|59aa|down_4|NZ_CP014928.1_10421_10598_+	NF000539, plantaricin, plantaricin C family lantibiotic	NA|218aa|down_5|NZ_CP014928.1_10677_11331_+	TIGR03897, Lantibiotic_mersacidin_modifying_enzyme, type 2 lantibiotic biosynthesis protein LanM	NA|288aa|down_6|NZ_CP014928.1_11362_12226_+	cd04792, LanM-like, Cyclases involved in the biosynthesis of class II lantibiotics, and similar proteins	NA|538aa|down_7|NZ_CP014928.1_12158_13772_+	TIGR03897, Lantibiotic_mersacidin_modifying_enzyme, type 2 lantibiotic biosynthesis protein LanM	NA|720aa|down_8|NZ_CP014928.1_13826_15986_+	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|315aa|down_9|NZ_CP014928.1_15985_16930_+	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
GCF_001702195.1_ASM170219v1	NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	2	27205-27307	2	CRISPRCasFinder	no			Orphan	ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT	37	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|129aa|up_7|NZ_CP014928.1_18842_19229_-,NA|76aa|up_4|NZ_CP014928.1_24735_24963_+,NA|93aa|up_3|NZ_CP014928.1_24985_25264_+,NA|62aa|up_1|NZ_CP014928.1_25930_26116_-,NA|92aa|down_0|NZ_CP014928.1_28679_28955_-,NA|389aa|down_3|NZ_CP014928.1_30867_32034_-	NA|246aa|up_9|NZ_CP014928.1_17662_18400_+	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|46aa|up_8|NZ_CP014928.1_18499_18637_+	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|129aa|up_7|NZ_CP014928.1_18842_19229_-	NA	NA|307aa|up_6|NZ_CP014928.1_19483_20404_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|392aa|up_5|NZ_CP014928.1_20866_22042_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|76aa|up_4|NZ_CP014928.1_24735_24963_+	NA	NA|93aa|up_3|NZ_CP014928.1_24985_25264_+	NA	NA|227aa|up_2|NZ_CP014928.1_25253_25934_-	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|62aa|up_1|NZ_CP014928.1_25930_26116_-	NA	NA|94aa|up_0|NZ_CP014928.1_26162_26444_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|92aa|down_0|NZ_CP014928.1_28679_28955_-	NA	NA|350aa|down_1|NZ_CP014928.1_28957_30007_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|196aa|down_2|NZ_CP014928.1_30139_30727_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|389aa|down_3|NZ_CP014928.1_30867_32034_-	NA	NA|301aa|down_4|NZ_CP014928.1_32026_32929_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|548aa|down_5|NZ_CP014928.1_33009_34653_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|423aa|down_6|NZ_CP014928.1_34649_35918_-	pfam13289, SIR2_2, SIR2-like domain	NA|1047aa|down_7|NZ_CP014928.1_35995_39136_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|378aa|down_8|NZ_CP014928.1_39128_40262_-	cd17496, RMtype1_S_BliBORF2384P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Bacillus licheniformis S subunit (S1	NA|509aa|down_9|NZ_CP014928.1_40251_41778_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
GCF_001702195.1_ASM170219v1	NZ_CP014931	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-7, complete sequence	1	27-130	1	CRISPRCasFinder	no			Orphan	AACTGCACTTTTTGCAGTTCCGCTTGTAGCAAGGGTTT	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|190aa|down_0|NZ_CP014931.1_1266_1836_+,NA|54aa|down_1|NZ_CP014931.1_1823_1985_+,NA|340aa|down_2|NZ_CP014931.1_2180_3200_+,NA|474aa|down_3|NZ_CP014931.1_3189_4611_+,NA|71aa|down_6|NZ_CP014931.1_5982_6195_+,NA|200aa|down_8|NZ_CP014931.1_8024_8624_+,NA|340aa|down_9|NZ_CP014931.1_8977_9997_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|190aa|down_0|NZ_CP014931.1_1266_1836_+	NA	NA|54aa|down_1|NZ_CP014931.1_1823_1985_+	NA	NA|340aa|down_2|NZ_CP014931.1_2180_3200_+	NA	NA|474aa|down_3|NZ_CP014931.1_3189_4611_+	NA	NA|88aa|down_4|NZ_CP014931.1_4699_4963_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|196aa|down_5|NZ_CP014931.1_5040_5628_+	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|71aa|down_6|NZ_CP014931.1_5982_6195_+	NA	NA|312aa|down_7|NZ_CP014931.1_6915_7851_+	pfam01051, Rep_3, Initiator Replication protein	NA|200aa|down_8|NZ_CP014931.1_8024_8624_+	NA	NA|340aa|down_9|NZ_CP014931.1_8977_9997_+	NA
GCF_001702195.1_ASM170219v1	NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	1	38822-38924	1	CRISPRCasFinder	no			Orphan	ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT	37	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|375aa|up_8|NZ_CP014932.1_30937_32062_-,NA|72aa|up_7|NZ_CP014932.1_32065_32281_-,NA|70aa|up_4|NZ_CP014932.1_36369_36579_+,NA|93aa|up_3|NZ_CP014932.1_36601_36880_+,NA|62aa|up_1|NZ_CP014932.1_37546_37732_-,NA|72aa|down_1|NZ_CP014932.1_40768_40984_+,NA|129aa|down_6|NZ_CP014932.1_47114_47501_-	NA|413aa|up_9|NZ_CP014932.1_29267_30506_+	cd17273, RMtype1_S_EcoJA69PI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|375aa|up_8|NZ_CP014932.1_30937_32062_-	NA	NA|72aa|up_7|NZ_CP014932.1_32065_32281_-	NA	NA|535aa|up_6|NZ_CP014932.1_32402_34007_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|688aa|up_5|NZ_CP014932.1_34035_36099_-	pfam03389, MobA_MobL, MobA/MobL family	NA|70aa|up_4|NZ_CP014932.1_36369_36579_+	NA	NA|93aa|up_3|NZ_CP014932.1_36601_36880_+	NA	NA|227aa|up_2|NZ_CP014932.1_36869_37550_-	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|62aa|up_1|NZ_CP014932.1_37546_37732_-	NA	NA|94aa|up_0|NZ_CP014932.1_37778_38060_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|262aa|down_0|NZ_CP014932.1_39976_40762_+	pfam13614, AAA_31, AAA domain	NA|72aa|down_1|NZ_CP014932.1_40768_40984_+	NA	NA|293aa|down_2|NZ_CP014932.1_41291_42170_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|265aa|down_3|NZ_CP014932.1_42343_43138_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|293aa|down_4|NZ_CP014932.1_43262_44141_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|455aa|down_5|NZ_CP014932.1_45618_46983_-	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|129aa|down_6|NZ_CP014932.1_47114_47501_-	NA	NA|228aa|down_7|NZ_CP014932.1_48461_49145_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|443aa|down_8|NZ_CP014932.1_49284_50613_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|329aa|down_9|NZ_CP014932.1_51377_52364_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
