The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	3437918	1055682	1119708	3437918	portal,capsid,terminase,head,transposase,tail	Streptococcus_phage(12.5%)	57	NA	NA
WP_065900857.1|1055682_1056987_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	55.7	2.6e-131
WP_065900954.1|1057161_1058544_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	30.8	4.3e-28
WP_065937539.1|1058946_1059666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054711977.1|1059841_1060291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083215475.1|1062449_1064213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056987503.1|1064405_1065815_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_054711985.1|1065858_1066326_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_054711987.1|1067233_1067632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065928544.1|1068565_1068787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056987505.1|1068789_1069470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054712002.1|1069545_1070172_+	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_065937540.1|1070489_1071947_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_056987507.1|1072254_1073274_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_191982562.1|1074354_1076781_+	alkaline phosphatase family protein	NA	NA	NA	NA	NA
WP_191982555.1|1076889_1077891_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_054712821.1|1077966_1078545_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_056987148.1|1078803_1079724_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_054712818.1|1079972_1080290_+	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_065928744.1|1080615_1081104_-	effector binding domain-containing protein	NA	NA	NA	NA	NA
WP_065900954.1|1081501_1082884_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	30.8	4.3e-28
WP_083215477.1|1083409_1085041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065901835.1|1085517_1087146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054712113.1|1087369_1087840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054712111.1|1088013_1088739_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_065901838.1|1088739_1089687_-	hydroxyacid dehydrogenase	NA	M1HMI7	Paramecium_bursaria_Chlorella_virus	33.6	1.1e-30
WP_082409389.1|1089698_1089863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054712109.1|1090194_1090602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083215578.1|1090747_1092040_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_065901845.1|1092168_1093071_-	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	26.5	9.5e-08
WP_054712107.1|1093248_1093704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054711767.1|1094068_1094509_+	OsmC family protein	NA	NA	NA	NA	NA
WP_054711801.1|1094638_1095040_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_156319364.1|1096535_1096793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156652848.1|1096811_1096997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054711773.1|1097078_1097675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054711775.1|1098338_1098659_-	thiamine-binding protein	NA	NA	NA	NA	NA
WP_054711778.1|1098804_1099284_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_083215579.1|1099782_1101042_-	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	28.7	4.4e-19
WP_065901847.1|1101185_1101992_-	MBL fold metallo-hydrolase	NA	A0A2I7SDH3	Paenibacillus_phage	34.6	5.3e-34
WP_065937543.1|1102473_1103130_+	NADPH-dependent F420 reductase	NA	NA	NA	NA	NA
WP_056987344.1|1103758_1104589_-	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_065901849.1|1104613_1105912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083215478.1|1105901_1107776_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.5	1.0e-32
WP_065901851.1|1108043_1108763_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.4	2.3e-41
WP_042522391.1|1109691_1109892_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	74.6	1.6e-21
WP_054711791.1|1110010_1110382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065901853.1|1110555_1110825_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_054711795.1|1110949_1112485_-|capsid	phage major capsid protein	capsid	B8R651	Lactobacillus_phage	25.9	2.0e-45
WP_054711797.1|1112481_1113582_-|portal	phage portal protein	portal	A0A2H4J9Q5	uncultured_Caudovirales_phage	33.6	3.3e-47
WP_042522387.1|1113578_1113776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065901855.1|1113735_1115433_-|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	41.1	9.8e-123
WP_054711942.1|1115429_1115903_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
WP_054711944.1|1116680_1117091_-	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	44.8	1.9e-19
WP_065937544.1|1117171_1117513_-|head	phage head closure protein	head	E9LUQ5	Lactobacillus_phage	39.8	2.8e-13
WP_054711946.1|1117522_1117705_-	sporulation protein Cse60	NA	NA	NA	NA	NA
WP_065901857.1|1117776_1118148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065901858.1|1118313_1119708_-	virulence protein	NA	Q4ZD27	Staphylococcus_phage	36.5	3.2e-71
>prophage 2
NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	3437918	2346063	2354317	3437918		Enterococcus_phage(66.67%)	7	NA	NA
WP_054711476.1|2346063_2347059_+	D-2-hydroxyacid dehydrogenase	NA	M1HMI7	Paramecium_bursaria_Chlorella_virus	35.5	2.3e-39
WP_065902744.1|2347114_2347696_-	TIGR00730 family Rossman fold protein	NA	A0A1D3SNB7	Enterococcus_phage	37.3	4.8e-21
WP_065937624.1|2347992_2348949_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	63.4	1.6e-117
WP_056987566.1|2348974_2351146_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.1	1.6e-258
WP_054711467.1|2351281_2351512_-	glutaredoxin-like protein NrdH	NA	V5UQJ1	Enterococcus_phage	49.3	2.3e-11
WP_056987569.1|2351744_2352227_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_065902749.1|2352535_2354317_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	40.1	8.3e-56
>prophage 3
NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	3437918	2754461	2765965	3437918		Streptococcus_phage(37.5%)	8	NA	NA
WP_065903034.1|2754461_2756351_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.4	7.1e-130
WP_065903035.1|2756536_2757700_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	28.2	3.0e-22
WP_054707664.1|2758248_2760087_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.2	3.5e-25
WP_054707660.1|2760241_2760697_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A1X9I727	Streptococcus_phage	60.7	2.1e-43
WP_054707657.1|2760724_2760907_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1X9I5W4	Streptococcus_phage	75.0	3.3e-21
WP_054707655.1|2761033_2761945_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.3	6.0e-18
WP_065903036.1|2762099_2764442_+	FAD-binding protein	NA	A0A2P0ZL82	Lactobacillus_phage	50.3	5.1e-45
WP_056987840.1|2765011_2765965_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	44.7	1.8e-65
>prophage 4
NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	3437918	3246572	3255117	3437918		Synechococcus_phage(33.33%)	8	NA	NA
WP_056987621.1|3246572_3247163_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.3	3.1e-23
WP_156770492.1|3247131_3248175_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.9	1.4e-63
WP_065903506.1|3248164_3249625_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.6	1.5e-50
WP_065937706.1|3249600_3251832_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.7	2.2e-146
WP_054706778.1|3251836_3252508_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_054706775.1|3252504_3252762_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_082409110.1|3252789_3253485_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	36.3	1.3e-36
WP_065903509.1|3254634_3255117_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.5	6.8e-21
>prophage 1
NZ_CP014925	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-1, complete sequence	38125	0	7189	38125	integrase	Lactobacillus_phage(66.67%)	12	4251:4264	17039:17052
WP_156770510.1|402_552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065904102.1|544_907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065904100.1|903_1098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065904097.1|1097_1538_+	hypothetical protein	NA	D6PSV5	Lactobacillus_phage	54.6	1.9e-33
WP_065904095.1|1518_1710_+	hypothetical protein	NA	D6PSV7	Lactobacillus_phage	91.9	3.3e-27
WP_065904091.1|1753_2182_+	transcriptional regulator	NA	E9LUP5	Lactobacillus_phage	70.9	1.3e-52
WP_065904088.1|2662_3184_+	HNH endonuclease	NA	E9LUP7	Lactobacillus_phage	68.2	1.4e-59
WP_065904087.1|4178_4544_-	hypothetical protein	NA	NA	NA	NA	NA
4251:4264	attL	GAGGTGATTAATTT	NA	NA	NA	NA
WP_065904085.1|4556_5144_-|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	33.2	8.3e-21
WP_001748109.1|5229_5493_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001748110.1|5486_5831_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_065937709.1|5941_7189_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	29.8	5.1e-36
17039:17052	attR	GAGGTGATTAATTT	NA	NA	NA	NA
>prophage 2
NZ_CP014925	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-1, complete sequence	38125	16138	23794	38125	transposase	Bacillus_phage(14.29%)	9	NA	NA
WP_065904047.1|16138_16861_+	hypothetical protein	NA	A0A172JI54	Bacillus_phage	36.1	8.1e-26
WP_191982313.1|16818_17049_+	DUF2726 domain-containing protein	NA	A0A1B0WKK5	Flavobacterium_phage	50.0	3.2e-13
WP_065904039.1|17705_18260_+	hypothetical protein	NA	F7V9F0	Lactobacillus_virus	38.5	3.8e-15
WP_065904035.1|18259_18532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065900954.1|19047_20430_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	30.8	4.3e-28
WP_065904029.1|20934_21168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065904027.1|21160_21949_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	35.8	4.4e-33
WP_065937711.1|22010_22457_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	56.9	2.1e-40
WP_065903756.1|22561_23794_+|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	35.8	1.5e-51
>prophage 3
NZ_CP014925	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-1, complete sequence	38125	29122	37849	38125	transposase	Lactobacillus_phage(33.33%)	13	NA	NA
WP_083215608.1|29122_29956_-	DUF4428 domain-containing protein	NA	O48432	Lactobacillus_phage	28.5	2.5e-18
WP_065904008.1|30006_30729_-	XRE family transcriptional regulator	NA	A0A2H4JFP1	uncultured_Caudovirales_phage	41.1	4.0e-17
WP_065904004.1|30857_31106_+	helix-turn-helix transcriptional regulator	NA	S5M643	Brevibacillus_phage	41.5	4.1e-06
WP_065904001.1|31137_31818_+	antA/AntB antirepressor family protein	NA	A0A1P8BKZ9	Lactococcus_phage	45.7	1.9e-45
WP_065903998.1|31886_32399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054759853.1|32403_32664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156770509.1|32668_32815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065904117.1|32950_33268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065904113.1|33260_34094_+	phage recombination protein Bet	NA	A8ATK8	Listeria_phage	50.9	5.2e-53
WP_065904110.1|34029_34869_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	A0A0P0IZH9	Lactobacillus_phage	47.9	6.4e-67
WP_065937713.1|34880_35753_+	DnaD domain protein	NA	A0A1L2JY26	Aeribacillus_phage	38.6	6.8e-19
WP_065904124.1|35752_36460_+	hypothetical protein	NA	E9LUU3	Lactobacillus_phage	70.1	7.5e-93
WP_065903756.1|36616_37849_-|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	35.8	1.5e-51
>prophage 1
NZ_CP014926	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-2, complete sequence	45296	678	6489	45296		uncultured_Caudovirales_phage(14.29%)	9	NA	NA
WP_065937717.1|678_1401_-	XRE family transcriptional regulator	NA	A0A2H4JFP1	uncultured_Caudovirales_phage	43.6	4.9e-15
WP_065904004.1|1528_1777_+	helix-turn-helix transcriptional regulator	NA	S5M643	Brevibacillus_phage	41.5	4.1e-06
WP_065937718.1|1808_2489_+	antA/AntB antirepressor family protein	NA	A0A1P8BKZ9	Lactococcus_phage	43.4	2.5e-45
WP_156770509.1|2555_2702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065904117.1|2837_3155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065904113.1|3147_3981_+	phage recombination protein Bet	NA	A8ATK8	Listeria_phage	50.9	5.2e-53
WP_065937719.1|3916_4756_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	A0A0P0IZH9	Lactobacillus_phage	48.0	3.4e-68
WP_065937720.1|4850_5693_+	DUF4373 domain-containing protein	NA	A0A0H4TKJ7	Bacillus_phage	40.9	1.3e-19
WP_054712564.1|5703_6489_+	ParA family protein	NA	A0A1V0DZZ0	Clostridioides_phage	33.3	3.9e-18
>prophage 1
NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	57063	0	1896	57063	transposase	Lactobacillus_phage(100.0%)	1	NA	NA
WP_156773239.1|1060_1896_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	99.4	5.2e-85
>prophage 2
NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	57063	7224	9097	57063	transposase	Staphylococcus_phage(50.0%)	2	NA	NA
WP_065937820.1|7224_8250_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.2	1.5e-41
WP_065937821.1|8512_9097_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	34.2	2.0e-19
>prophage 3
NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	57063	17596	34007	57063	transposase	Streptococcus_phage(25.0%)	14	NA	NA
WP_065937824.1|17596_18898_+	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	38.7	6.7e-79
WP_032809155.1|18890_19211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065937825.1|19203_19590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065937826.1|19646_20483_-	GIY-YIG nuclease family protein	NA	J7KF35	Aeromonas_phage	34.0	8.2e-06
WP_065937827.1|20601_20781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042749361.1|20773_21130_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5WJH4	Leptospira_phage	36.6	6.8e-10
WP_191982570.1|21213_22755_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	32.1	5.1e-54
WP_065937829.1|22879_23974_-	lysozyme	NA	NA	NA	NA	NA
WP_065937830.1|24474_27642_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	22.6	4.8e-22
WP_065937831.1|27655_29278_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	50.1	1.6e-127
WP_083215626.1|29267_30506_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	32.1	3.8e-15
WP_065937832.1|30937_32062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003679901.1|32065_32281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083215627.1|32402_34007_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	46.0	9.3e-107
>prophage 4
NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	57063	38292	40762	57063		Streptococcus_phage(50.0%)	2	NA	NA
WP_065937762.1|38292_39399_-	replication initiator protein A	NA	A0A220GFI5	Streptococcus_phage	45.5	2.5e-18
WP_017866972.1|39976_40762_+	AAA family ATPase	NA	F0PIG8	Enterococcus_phage	35.6	2.0e-30
>prophage 5
NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	57063	45618	53907	57063	transposase	Staphylococcus_phage(75.0%)	7	NA	NA
WP_042749386.1|45618_46983_-	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	22.6	1.5e-09
WP_006351716.1|47114_47501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065868904.1|48461_49145_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.1e-60
WP_003591692.1|49284_50613_-	MFS transporter	NA	NA	NA	NA	NA
WP_191982569.1|51377_52364_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.9	2.8e-45
WP_083215628.1|52552_52981_+	FMN-binding protein	NA	NA	NA	NA	NA
WP_065937835.1|53223_53907_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	50.9	2.3e-59
