The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	3476943	1147922	1159424	3476943		Streptococcus_phage(37.5%)	8	NA	NA
WP_065911952.1|1147922_1149812_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.6	5.4e-130
WP_065903035.1|1149997_1151161_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	28.2	3.0e-22
WP_054707664.1|1151709_1153548_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.2	3.5e-25
WP_054707660.1|1153702_1154158_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A1X9I727	Streptococcus_phage	60.7	2.1e-43
WP_054707657.1|1154185_1154368_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1X9I5W4	Streptococcus_phage	75.0	3.3e-21
WP_054707655.1|1154494_1155406_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.3	6.0e-18
WP_065911953.1|1155558_1157901_+	FAD-binding protein	NA	A0A2P0ZL82	Lactobacillus_phage	50.3	5.1e-45
WP_056987840.1|1158470_1159424_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	44.7	1.8e-65
>prophage 2
NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	3476943	1325444	1333253	3476943	tRNA	Staphylococcus_phage(33.33%)	7	NA	NA
WP_065912066.1|1325444_1325720_+	HU family DNA-binding protein	NA	A0A0H3UZA0	Geobacillus_virus	66.3	2.6e-25
WP_056987959.1|1326281_1327550_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_065912069.1|1327655_1328444_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	34.2	5.3e-39
WP_054709994.1|1328631_1329840_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	49.8	8.4e-44
WP_065903134.1|1329863_1331762_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.4	8.0e-49
WP_065912071.1|1331800_1332754_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	64.1	1.3e-119
WP_054709988.1|1332764_1333253_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	40.3	8.4e-27
>prophage 3
NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	3476943	1829092	1837345	3476943		Enterococcus_phage(66.67%)	7	NA	NA
WP_065912362.1|1829092_1830874_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	40.1	8.3e-56
WP_056987569.1|1831182_1831665_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_054711467.1|1831897_1832128_+	glutaredoxin-like protein NrdH	NA	V5UQJ1	Enterococcus_phage	49.3	2.3e-11
WP_065912363.1|1832263_1834435_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.0	4.6e-258
WP_065912368.1|1834459_1835416_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	63.1	3.5e-117
WP_065912370.1|1835712_1836294_+	TIGR00730 family Rossman fold protein	NA	A0A1D3SNB7	Enterococcus_phage	37.9	2.8e-21
WP_054711476.1|1836349_1837345_-	D-2-hydroxyacid dehydrogenase	NA	M1HMI7	Paramecium_bursaria_Chlorella_virus	35.5	2.3e-39
>prophage 4
NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	3476943	3054318	3061187	3476943	capsid,portal,head,terminase,tail	Lactobacillus_phage(40.0%)	8	NA	NA
WP_065901853.1|3054318_3054588_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_065928581.1|3054712_3056248_-|capsid	phage major capsid protein	capsid	B8R651	Lactobacillus_phage	25.7	3.3e-45
WP_065928582.1|3056244_3057345_-|portal	phage portal protein	portal	A0A2H4J9Q5	uncultured_Caudovirales_phage	33.6	7.4e-47
WP_042522387.1|3057341_3057539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065901855.1|3057498_3059196_-|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	41.1	9.8e-123
WP_054711942.1|3059192_3059666_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
WP_054711944.1|3060443_3060854_-	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	44.8	1.9e-19
WP_191982278.1|3060911_3061187_-|head	phage head closure protein	head	E9LUQ5	Lactobacillus_phage	40.7	8.9e-10
>prophage 1
NZ_CP014917	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence	24661	0	23836	24661	head,portal,terminase	Lactobacillus_phage(65.0%)	31	NA	NA
WP_065928777.1|341_1619_-	helicase	NA	A0A2P0ZLC4	Lactobacillus_phage	59.0	1.3e-143
WP_065928778.1|1608_2403_-	bifunctional DNA primase/polymerase	NA	A0A2P0ZLB0	Lactobacillus_phage	61.7	2.8e-88
WP_065928779.1|2478_3111_-	hypothetical protein	NA	A0A2P0ZLB9	Lactobacillus_phage	52.9	7.8e-49
WP_065928780.1|3113_3836_-	AAA family ATPase	NA	A0A1B0YEB5	Lactobacillus_phage	61.2	6.7e-81
WP_065928782.1|5204_6083_-	DUF1351 domain-containing protein	NA	A0A0P0IV40	Lactobacillus_phage	33.6	2.6e-34
WP_156771287.1|6502_6661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065928783.1|6670_7378_-	phage antirepressor KilAC domain-containing protein	NA	E9LUT0	Lactobacillus_phage	83.9	6.7e-110
WP_065928784.1|7436_7670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065928785.1|7672_7900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065928786.1|7915_8686_-	hypothetical protein	NA	A0A223LFP5	Staphylococcus_phage	52.5	1.5e-30
WP_065928787.1|8701_8950_-	helix-turn-helix domain-containing protein	NA	A0A0P0IX93	Lactobacillus_phage	60.0	2.0e-16
WP_065928788.1|9117_9795_+	helix-turn-helix transcriptional regulator	NA	E9LUS8	Lactobacillus_phage	60.8	1.0e-67
WP_065928789.1|9978_10365_+	transporter	NA	A0A0P0I7G8	Lactobacillus_phage	69.3	3.9e-35
WP_065928790.1|11515_12349_+	AAA family ATPase	NA	F0PIG8	Enterococcus_phage	42.8	4.0e-53
WP_065928791.1|12351_12711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065928792.1|12847_13120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065928793.1|13119_13950_-	autolysin	NA	A0A075KQK4	Lactobacillus_phage	33.0	1.1e-29
WP_065928794.1|13942_14371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083224392.1|14411_14555_-	XkdX family protein	NA	NA	NA	NA	NA
WP_065928795.1|14567_14975_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_065928796.1|15390_16518_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	31.9	5.9e-15
WP_065928806.1|16540_17248_-|head	phage head morphogenesis protein	head	NA	NA	NA	NA
WP_083224393.1|17396_19187_-|portal	phage portal protein	portal	C9E2I8	Enterococcus_phage	27.9	2.7e-46
WP_065928798.1|19140_19485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065928799.1|19657_20968_-|terminase	PBSX family phage terminase large subunit	terminase	D2IYW1	Enterococcus_phage	52.0	3.9e-111
WP_065928800.1|20964_21471_-|terminase	terminase small subunit	terminase	O03926	Lactobacillus_phage	63.2	1.9e-42
WP_065928807.1|21652_21931_-	DUF2829 domain-containing protein	NA	A0A1X9HVT2	Ruegeria_phage	50.0	4.3e-20
WP_065928801.1|22413_22842_-	transcriptional regulator	NA	E9LUP5	Lactobacillus_phage	66.7	2.0e-48
WP_156771288.1|22900_23077_-	hypothetical protein	NA	D6PSV7	Lactobacillus_phage	96.6	4.3e-26
WP_065928802.1|23057_23309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156771289.1|23305_23836_-	hypothetical protein	NA	A0A2H4JHW6	uncultured_Caudovirales_phage	37.0	4.9e-20
>prophage 1
NZ_CP014919	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-4, complete sequence	25419	0	4619	25419	transposase	Clostridioides_phage(50.0%)	5	NA	NA
WP_010010267.1|106_913_+	ParA family protein	NA	A0A1V0DZZ0	Clostridioides_phage	30.1	2.3e-21
WP_002825834.1|926_1175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065928828.1|1780_2890_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_003646131.1|3158_3440_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_065928829.1|3593_4619_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.1	3.3e-41
>prophage 2
NZ_CP014919	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-4, complete sequence	25419	9091	21154	25419	holin	Staphylococcus_phage(40.0%)	9	NA	NA
WP_065928832.1|9091_11227_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	45.6	6.8e-105
WP_065928833.1|11348_11579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065928834.1|11568_12693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021353390.1|12849_12939_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_065928835.1|13297_13852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065928836.1|13854_15228_+	N-6 DNA methylase	NA	A0A2H4PQP4	Staphylococcus_phage	36.8	2.4e-55
WP_065928837.1|15299_16826_+	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	28.2	3.7e-44
WP_083224399.1|16815_18024_+	restriction endonuclease subunit S	NA	E3T4D5	Cafeteria_roenbergensis_virus	25.6	1.2e-18
WP_065928838.1|18016_21154_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	29.2	3.4e-60
>prophage 1
NZ_CP014923	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-8	13546	2392	12915	13546	integrase,terminase,transposase	Staphylococcus_phage(22.22%)	12	NA	NA
WP_065928769.1|2392_4015_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	50.3	1.6e-127
WP_065928770.1|4004_5183_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	27.1	1.2e-21
WP_001748110.1|5294_5639_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_041153703.1|5983_6571_+|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	33.2	6.3e-21
WP_065928863.1|7813_8269_+|terminase	phage terminase small subunit P27 family	terminase	E9LUP8	Lactobacillus_phage	94.0	6.3e-77
WP_065904047.1|8498_9221_+	hypothetical protein	NA	A0A172JI54	Bacillus_phage	36.1	8.1e-26
WP_191982313.1|9178_9409_+	DUF2726 domain-containing protein	NA	A0A1B0WKK5	Flavobacterium_phage	50.0	3.2e-13
WP_065904039.1|10065_10620_+	hypothetical protein	NA	F7V9F0	Lactobacillus_virus	38.5	3.8e-15
WP_065928864.1|10619_10892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065904029.1|11392_11626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065904027.1|11618_12407_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	35.8	4.4e-33
WP_065928866.1|12468_12915_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	56.5	9.3e-41
