assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	1	532556-532699	1	CRISPRCasFinder	no	RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	GGCTAACGTGTAACGGACTCTGGCAAAGAAGTCAGGCCCGGACTTTTCT	49	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|58aa|up_9|NZ_CP014912.1_520495_520669_+,NA	NA|58aa|up_9|NZ_CP014912.1_520495_520669_+	NA	RT|461aa|up_8|NZ_CP014912.1_521142_522525_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|370aa|up_7|NZ_CP014912.1_522847_523957_-	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|267aa|up_6|NZ_CP014912.1_523958_524759_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|576aa|up_5|NZ_CP014912.1_524727_526455_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|427aa|up_4|NZ_CP014912.1_526451_527732_-	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases	NA|361aa|up_3|NZ_CP014912.1_528117_529200_-	cd01142, TroA_e, Periplasmic binding protein TroA_e	NA|366aa|up_2|NZ_CP014912.1_529290_530388_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|144aa|up_1|NZ_CP014912.1_531518_531950_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|91aa|up_0|NZ_CP014912.1_532087_532360_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	RT|461aa|down_0|NZ_CP014912.1_534230_535613_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|248aa|down_1|NZ_CP014912.1_536477_537221_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|125aa|down_2|NZ_CP014912.1_537207_537582_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|321aa|down_3|NZ_CP014912.1_537705_538668_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|132aa|down_4|NZ_CP014912.1_538772_539168_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|259aa|down_5|NZ_CP014912.1_539654_540431_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|283aa|down_6|NZ_CP014912.1_542437_543286_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	RT|461aa|down_7|NZ_CP014912.1_543485_544868_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|85aa|down_8|NZ_CP014912.1_545358_545613_-	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif	NA|1582aa|down_9|NZ_CP014912.1_545663_550409_-	pfam18483, Bact_lectin, Bacterial lectin
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	2	685317-685402	2	CRISPRCasFinder	no	cas14j	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	AATAAGAAACTTTAAGTATCTTA	23	0	0	NA	NA	NA	1	1	TypeV	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|53aa|down_3|NZ_CP014912.1_691077_691236_+,NA|128aa|down_7|NZ_CP014912.1_698890_699274_-	NA|333aa|up_9|NZ_CP014912.1_671971_672970_+	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]	NA|457aa|up_8|NZ_CP014912.1_672991_674362_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|294aa|up_7|NZ_CP014912.1_674361_675243_+	cd01944, YegV_kinase_like, YegV-like sugar kinase	NA|157aa|up_6|NZ_CP014912.1_675455_675926_+	COG5015, COG5015, Uncharacterized conserved protein [Function unknown]	NA|463aa|up_5|NZ_CP014912.1_676039_677428_-	PRK06481, PRK06481, flavocytochrome c	NA|462aa|up_4|NZ_CP014912.1_677707_679093_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|317aa|up_3|NZ_CP014912.1_679429_680380_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|182aa|up_2|NZ_CP014912.1_680684_681230_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|390aa|up_1|NZ_CP014912.1_681243_682413_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|278aa|up_0|NZ_CP014912.1_682922_683756_-	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|201aa|down_0|NZ_CP014912.1_685421_686024_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|650aa|down_1|NZ_CP014912.1_686814_688764_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|625aa|down_2|NZ_CP014912.1_689103_690978_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|53aa|down_3|NZ_CP014912.1_691077_691236_+	NA	NA|390aa|down_4|NZ_CP014912.1_693674_694844_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|277aa|down_5|NZ_CP014912.1_695063_695894_-	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|371aa|down_6|NZ_CP014912.1_697451_698564_-	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|128aa|down_7|NZ_CP014912.1_698890_699274_-	NA	cas14j|380aa|down_8|NZ_CP014912.1_699482_700622_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|142aa|down_9|NZ_CP014912.1_700923_701349_-	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	3	979657-979776	3	CRISPRCasFinder	no	RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	TGGAACTCGTTTCGGCACAGCTGCCTAGAAAGG	33	1	16	979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743|979690-979743	NZ_CP014912.1_311931-311984|NZ_CP014912.1_1465732-1465785|NZ_CP014912.1_2569349-2569402|NZ_CP014912.1_239236-239183|NZ_CP014912.1_2770812-2770759|NZ_CP014912.1_3060594-3060541|NZ_CP014912.1_3117865-3117812|NZ_CP014912.1_1716788-1716841|NZ_CP014912.1_2028458-2028511|NZ_CP014912.1_351429-351376|NZ_CP014912.1_434794-434741|NZ_CP014912.1_709688-709635|NZ_CP014912.1_872325-872272|NZ_CP014912.1_497289-497342|NZ_CP014912.1_1210750-1210803|NZ_CP014912.1_2470176-2470229	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|291aa|up_9|NZ_CP014912.1_965771_966644_+	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme	NA|147aa|up_8|NZ_CP014912.1_966707_967148_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|222aa|up_7|NZ_CP014912.1_967269_967935_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|654aa|up_6|NZ_CP014912.1_968671_970633_+	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1	NA|368aa|up_5|NZ_CP014912.1_971034_972138_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|327aa|up_4|NZ_CP014912.1_972161_973142_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|718aa|up_3|NZ_CP014912.1_973769_975923_+	TIGR03715, cell_surface_protein_precursor, KxYKxGKxW signal peptide	NA|268aa|up_2|NZ_CP014912.1_976029_976833_-	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|397aa|up_1|NZ_CP014912.1_976881_978072_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|375aa|up_0|NZ_CP014912.1_978426_979551_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|261aa|down_0|NZ_CP014912.1_980075_980858_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|644aa|down_1|NZ_CP014912.1_980915_982847_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|92aa|down_2|NZ_CP014912.1_982843_983119_-	pfam13473, Cupredoxin_1, Cupredoxin-like domain	NA|124aa|down_3|NZ_CP014912.1_983134_983506_-	COG4633, COG4633, Plastocyanin domain containing protein [General function prediction only]	NA|287aa|down_4|NZ_CP014912.1_985790_986651_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|267aa|down_5|NZ_CP014912.1_986647_987448_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|255aa|down_6|NZ_CP014912.1_987444_988209_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|343aa|down_7|NZ_CP014912.1_988236_989265_-	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein	NA|156aa|down_8|NZ_CP014912.1_989551_990019_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|401aa|down_9|NZ_CP014912.1_990021_991224_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	4	1078742-1078847	4	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	TTGGCATCATAGCCGTAACGTGTTCC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|95aa|down_9|NZ_CP014912.1_1090323_1090608_+	NA|155aa|up_9|NZ_CP014912.1_1066409_1066874_-	pfam11457, DUF3021, Protein of unknown function (DUF3021)	NA|148aa|up_8|NZ_CP014912.1_1066870_1067314_-	smart00850, LytTR, LytTr DNA-binding domain	NA|299aa|up_7|NZ_CP014912.1_1067471_1068368_+	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|403aa|up_6|NZ_CP014912.1_1068835_1070044_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|338aa|up_5|NZ_CP014912.1_1070040_1071054_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|143aa|up_4|NZ_CP014912.1_1071718_1072147_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|235aa|up_3|NZ_CP014912.1_1072156_1072861_+	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|463aa|up_2|NZ_CP014912.1_1074144_1075533_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|up_1|NZ_CP014912.1_1075929_1076382_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|675aa|up_0|NZ_CP014912.1_1076481_1078506_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|471aa|down_0|NZ_CP014912.1_1079043_1080456_+	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|157aa|down_1|NZ_CP014912.1_1080508_1080979_-	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|79aa|down_2|NZ_CP014912.1_1081754_1081991_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|187aa|down_3|NZ_CP014912.1_1082016_1082577_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|96aa|down_4|NZ_CP014912.1_1082619_1082907_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|891aa|down_5|NZ_CP014912.1_1083318_1085991_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|649aa|down_6|NZ_CP014912.1_1086296_1088243_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|392aa|down_7|NZ_CP014912.1_1088261_1089437_-	PRK00064, recF, recombination protein F; Reviewed	NA|82aa|down_8|NZ_CP014912.1_1089439_1089685_-	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA	NA|95aa|down_9|NZ_CP014912.1_1090323_1090608_+	NA
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	5	1266340-1266475	5	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	GCATTTTTGCCAGAGTTGGCTTACATGCAGCTTTCTGTTTT	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|72aa|up_3|NZ_CP014912.1_1262282_1262498_+,NA|257aa|down_8|NZ_CP014912.1_1274156_1274927_+	NA|331aa|up_9|NZ_CP014912.1_1255339_1256332_-	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs	NA|408aa|up_8|NZ_CP014912.1_1256434_1257658_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|443aa|up_7|NZ_CP014912.1_1258418_1259747_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|211aa|up_6|NZ_CP014912.1_1259911_1260544_+	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|161aa|up_5|NZ_CP014912.1_1260605_1261088_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|308aa|up_4|NZ_CP014912.1_1261255_1262179_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|72aa|up_3|NZ_CP014912.1_1262282_1262498_+	NA	NA|240aa|up_2|NZ_CP014912.1_1263542_1264262_-	pfam04474, DUF554, Protein of unknown function (DUF554)	NA|379aa|up_1|NZ_CP014912.1_1264605_1265742_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|138aa|up_0|NZ_CP014912.1_1265764_1266178_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|157aa|down_0|NZ_CP014912.1_1266562_1267033_+	PRK02487, PRK02487, heme-degrading domain-containing protein	NA|288aa|down_1|NZ_CP014912.1_1267109_1267973_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|200aa|down_2|NZ_CP014912.1_1268416_1269016_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|325aa|down_3|NZ_CP014912.1_1269216_1270191_+	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)	NA|182aa|down_4|NZ_CP014912.1_1270603_1271149_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|279aa|down_5|NZ_CP014912.1_1271289_1272126_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|318aa|down_6|NZ_CP014912.1_1272138_1273092_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|280aa|down_7|NZ_CP014912.1_1273163_1274003_-	PRK06940, PRK06940, short chain dehydrogenase; Provisional	NA|257aa|down_8|NZ_CP014912.1_1274156_1274927_+	NA	NA|429aa|down_9|NZ_CP014912.1_1277418_1278705_-	PRK00077, eno, enolase; Provisional
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	6	1499870-1500829	6,1,1	CRISPRCasFinder,CRT,PILER-CR	no	RT,cas9,cas1,cas2,csn2	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Type II-C,Type II-B,Type II-A	GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC,GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC,GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	36,36,36	1	1	1499972-1500001	NZ_CP014912.1_475736-475707	NA:NA:NA	14,14,8	14	TypeII-C,TypeII-B,TypeII-A	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|62aa|up_8|NZ_CP014912.1_1488691_1488877_+,NA	NA|413aa|up_9|NZ_CP014912.1_1486883_1488122_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|62aa|up_8|NZ_CP014912.1_1488691_1488877_+	NA	RT|461aa|up_7|NZ_CP014912.1_1489336_1490719_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|188aa|up_6|NZ_CP014912.1_1490794_1491358_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|186aa|up_5|NZ_CP014912.1_1491673_1492231_-	PRK13690, PRK13690, hypothetical protein; Provisional	NA|299aa|up_4|NZ_CP014912.1_1492469_1493366_-	cd01020, TroA_b, Metal binding protein TroA_b	cas9|1369aa|up_3|NZ_CP014912.1_1493666_1497773_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|309aa|up_2|NZ_CP014912.1_1497970_1498897_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|107aa|up_1|NZ_CP014912.1_1498859_1499180_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP014912.1_1499176_1499842_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|84aa|down_0|NZ_CP014912.1_1501171_1501423_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|241aa|down_1|NZ_CP014912.1_1501577_1502300_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|242aa|down_2|NZ_CP014912.1_1502406_1503132_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|674aa|down_3|NZ_CP014912.1_1503131_1505153_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|236aa|down_4|NZ_CP014912.1_1506247_1506955_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|256aa|down_5|NZ_CP014912.1_1507038_1507806_+	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|220aa|down_6|NZ_CP014912.1_1508044_1508704_+	cd19364, TenA_C_BsTenA-like, TenA_C proteins similar to Bacillus subtilis TenA	NA|163aa|down_7|NZ_CP014912.1_1509259_1509748_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|377aa|down_8|NZ_CP014912.1_1510222_1511353_+	PRK06233, PRK06233, vitamin B12 independent methionine synthase	NA|274aa|down_9|NZ_CP014912.1_1511747_1512569_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	7	1551937-1552074	7	CRISPRCasFinder	no	RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	CAGAGTTGGCTTACATGCAGCTTTCTGTTTTCCGAAACGCGTTT	44	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|136aa|up_0|NZ_CP014912.1_1551352_1551760_-,NA	NA|503aa|up_9|NZ_CP014912.1_1538748_1540257_+	cd02549, Peptidase_C39A, A sub-family of peptidase family C39	NA|332aa|up_8|NZ_CP014912.1_1540246_1541242_+	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase	RT|461aa|up_7|NZ_CP014912.1_1541719_1543102_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|160aa|up_6|NZ_CP014912.1_1543189_1543669_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|541aa|up_5|NZ_CP014912.1_1543892_1545515_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|571aa|up_4|NZ_CP014912.1_1546030_1547743_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|184aa|up_3|NZ_CP014912.1_1547845_1548397_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|319aa|up_2|NZ_CP014912.1_1548607_1549564_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|401aa|up_1|NZ_CP014912.1_1549750_1550953_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|136aa|up_0|NZ_CP014912.1_1551352_1551760_-	NA	NA|215aa|down_0|NZ_CP014912.1_1552394_1553039_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|262aa|down_1|NZ_CP014912.1_1553171_1553957_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|159aa|down_2|NZ_CP014912.1_1554111_1554588_+	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|181aa|down_3|NZ_CP014912.1_1554680_1555223_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|179aa|down_4|NZ_CP014912.1_1555282_1555819_-	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	RT|461aa|down_5|NZ_CP014912.1_1556418_1557801_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|362aa|down_6|NZ_CP014912.1_1558421_1559507_+	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|304aa|down_7|NZ_CP014912.1_1559651_1560563_+	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|187aa|down_8|NZ_CP014912.1_1560615_1561176_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|219aa|down_9|NZ_CP014912.1_1562129_1562786_+	COG3358, COG3358, Uncharacterized conserved protein [Function unknown]
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	8	1628578-1628668	8	CRISPRCasFinder	no	RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	GTGTTCCCCGCATGTGCGGGGGTGATCCCA	30	0	0	NA	NA	I-C,I-E,II-B	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|140aa|up_8|NZ_CP014912.1_1615386_1615806_+,NA|50aa|up_7|NZ_CP014912.1_1617745_1617895_+,NA|101aa|down_1|NZ_CP014912.1_1630212_1630515_-,NA|83aa|down_4|NZ_CP014912.1_1634643_1634892_+	NA|360aa|up_9|NZ_CP014912.1_1613835_1614915_+	cd01541, PBP1_AraR, ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|140aa|up_8|NZ_CP014912.1_1615386_1615806_+	NA	NA|50aa|up_7|NZ_CP014912.1_1617745_1617895_+	NA	NA|208aa|up_6|NZ_CP014912.1_1617954_1618578_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|399aa|up_5|NZ_CP014912.1_1618705_1619902_-	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|210aa|up_4|NZ_CP014912.1_1619981_1620611_+	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family	RT|461aa|up_3|NZ_CP014912.1_1621192_1622575_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|374aa|up_2|NZ_CP014912.1_1625467_1626589_+	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase	NA|111aa|up_1|NZ_CP014912.1_1626762_1627095_+	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]	NA|429aa|up_0|NZ_CP014912.1_1627189_1628476_+	TIGR03173, pbuX, xanthine permease	NA|335aa|down_0|NZ_CP014912.1_1629086_1630091_-	NF033202, GW_glycos_SH3, GW domain-containing glycosaminoglycan-binding protein	NA|101aa|down_1|NZ_CP014912.1_1630212_1630515_-	NA	NA|302aa|down_2|NZ_CP014912.1_1632403_1633309_+	PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional	NA|247aa|down_3|NZ_CP014912.1_1633337_1634078_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|83aa|down_4|NZ_CP014912.1_1634643_1634892_+	NA	NA|567aa|down_5|NZ_CP014912.1_1635175_1636876_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|108aa|down_6|NZ_CP014912.1_1637040_1637364_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|593aa|down_7|NZ_CP014912.1_1637381_1639160_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|576aa|down_8|NZ_CP014912.1_1639263_1640991_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|965aa|down_9|NZ_CP014912.1_1641085_1643980_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	9	1644738-1644948	2,9,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Type I-E	GTATTCCCCACGCATGTGGGGGTGATCC,GTATTCCCCACGCATGTGGGGGTGATCC,GTATTCCCCACGCATGTGGGGGTGATCC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	2,3,3	3	TypeI-E	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|101aa|up_9|NZ_CP014912.1_1630212_1630515_-,NA|83aa|up_6|NZ_CP014912.1_1634643_1634892_+,NA	NA|101aa|up_9|NZ_CP014912.1_1630212_1630515_-	NA	NA|302aa|up_8|NZ_CP014912.1_1632403_1633309_+	PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional	NA|247aa|up_7|NZ_CP014912.1_1633337_1634078_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|83aa|up_6|NZ_CP014912.1_1634643_1634892_+	NA	NA|567aa|up_5|NZ_CP014912.1_1635175_1636876_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|108aa|up_4|NZ_CP014912.1_1637040_1637364_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|593aa|up_3|NZ_CP014912.1_1637381_1639160_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|576aa|up_2|NZ_CP014912.1_1639263_1640991_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|965aa|up_1|NZ_CP014912.1_1641085_1643980_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|138aa|up_0|NZ_CP014912.1_1643963_1644377_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	cas8e|574aa|down_0|NZ_CP014912.1_1648312_1650034_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|200aa|down_1|NZ_CP014912.1_1650040_1650640_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|357aa|down_2|NZ_CP014912.1_1650645_1651716_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_3|NZ_CP014912.1_1651696_1652413_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|down_4|NZ_CP014912.1_1652425_1653094_+	pfam08798, CRISPR_assoc, CRISPR associated protein	NA|220aa|down_5|NZ_CP014912.1_1654019_1654679_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|477aa|down_6|NZ_CP014912.1_1654821_1656252_-	PRK07121, PRK07121, FAD-binding protein	NA|180aa|down_7|NZ_CP014912.1_1657149_1657689_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|492aa|down_8|NZ_CP014912.1_1657805_1659281_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|601aa|down_9|NZ_CP014912.1_1659548_1661351_+	PRK07121, PRK07121, FAD-binding protein
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	10	1653176-1653570	3,10,3	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,RT	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Type I-E	GTATTCCCCACGCATGTGGGGGTGATCC,GTATTCCCCACGCATGTGGGGGTGATCC,GTATTCCCCACGCATGTGGG	28,28,20	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:NA	5,6,6	6	TypeI-E	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|108aa|up_9|NZ_CP014912.1_1637040_1637364_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|593aa|up_8|NZ_CP014912.1_1637381_1639160_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|576aa|up_7|NZ_CP014912.1_1639263_1640991_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|965aa|up_6|NZ_CP014912.1_1641085_1643980_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|138aa|up_5|NZ_CP014912.1_1643963_1644377_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	cas8e|574aa|up_4|NZ_CP014912.1_1648312_1650034_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|200aa|up_3|NZ_CP014912.1_1650040_1650640_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|357aa|up_2|NZ_CP014912.1_1650645_1651716_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_1|NZ_CP014912.1_1651696_1652413_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|up_0|NZ_CP014912.1_1652425_1653094_+	pfam08798, CRISPR_assoc, CRISPR associated protein	NA|220aa|down_0|NZ_CP014912.1_1654019_1654679_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|477aa|down_1|NZ_CP014912.1_1654821_1656252_-	PRK07121, PRK07121, FAD-binding protein	NA|180aa|down_2|NZ_CP014912.1_1657149_1657689_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|492aa|down_3|NZ_CP014912.1_1657805_1659281_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|601aa|down_4|NZ_CP014912.1_1659548_1661351_+	PRK07121, PRK07121, FAD-binding protein	NA|680aa|down_5|NZ_CP014912.1_1661385_1663425_+	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|462aa|down_6|NZ_CP014912.1_1663522_1664908_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|192aa|down_7|NZ_CP014912.1_1664922_1665498_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|274aa|down_8|NZ_CP014912.1_1665893_1666715_+	COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	NA|430aa|down_9|NZ_CP014912.1_1666813_1668103_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	11	2265135-2265270	11	CRISPRCasFinder	no	RT,DEDDh	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Unclear	GCCTTGCGGAACGCGTTACGGCACGGATGCCTAGAAAG	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|48aa|down_9|NZ_CP014912.1_2276820_2276964_+	NA|513aa|up_9|NZ_CP014912.1_2255319_2256858_+	cd01031, EriC, ClC chloride channel EriC	NA|79aa|up_8|NZ_CP014912.1_2256951_2257188_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|250aa|up_7|NZ_CP014912.1_2257275_2258025_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|807aa|up_6|NZ_CP014912.1_2258043_2260464_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|158aa|up_5|NZ_CP014912.1_2260491_2260965_+	pfam01668, SmpB, SmpB protein	NA|196aa|up_4|NZ_CP014912.1_2261518_2262106_-	COG4894, COG4894, Uncharacterized conserved protein [Function unknown]	NA|237aa|up_3|NZ_CP014912.1_2262223_2262934_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|330aa|up_2|NZ_CP014912.1_2262991_2263981_+	PRK09653, eutD, phosphotransacetylase	NA|160aa|up_1|NZ_CP014912.1_2264068_2264548_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|166aa|up_0|NZ_CP014912.1_2264537_2265035_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	DEDDh|178aa|down_0|NZ_CP014912.1_2265575_2266109_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|255aa|down_1|NZ_CP014912.1_2266149_2266914_-	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases	NA|303aa|down_2|NZ_CP014912.1_2267060_2267969_+	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|707aa|down_3|NZ_CP014912.1_2267989_2270110_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|227aa|down_4|NZ_CP014912.1_2270300_2270981_-	pfam07099, DUF1361, Protein of unknown function (DUF1361)	NA|284aa|down_5|NZ_CP014912.1_2271156_2272008_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|324aa|down_6|NZ_CP014912.1_2272004_2272976_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|down_7|NZ_CP014912.1_2273001_2274357_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|606aa|down_8|NZ_CP014912.1_2274575_2276393_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|48aa|down_9|NZ_CP014912.1_2276820_2276964_+	NA
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	12	2510931-2511060	12	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	TAGAGAGCAGGGGTGCTGGATGAAATGTCTGGGTC	35	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA|297aa|down_1|NZ_CP014912.1_2513363_2514254_+	NA|97aa|up_9|NZ_CP014912.1_2502220_2502511_+	pfam09902, DUF2129, Uncharacterized protein conserved in bacteria (DUF2129)	NA|191aa|up_8|NZ_CP014912.1_2502511_2503084_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|157aa|up_7|NZ_CP014912.1_2503076_2503547_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|350aa|up_6|NZ_CP014912.1_2503560_2504610_+	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]	NA|215aa|up_5|NZ_CP014912.1_2505396_2506041_+	TIGR01259, ComE_operon_protein_1, comEA protein	NA|162aa|up_4|NZ_CP014912.1_2506143_2506629_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|732aa|up_3|NZ_CP014912.1_2506675_2508871_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|337aa|up_2|NZ_CP014912.1_2508885_2509896_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|88aa|up_1|NZ_CP014912.1_2509960_2510224_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|90aa|up_0|NZ_CP014912.1_2510490_2510760_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|594aa|down_0|NZ_CP014912.1_2511519_2513301_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|297aa|down_1|NZ_CP014912.1_2513363_2514254_+	NA	NA|396aa|down_2|NZ_CP014912.1_2514454_2515642_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|439aa|down_3|NZ_CP014912.1_2515857_2517174_+	PRK01490, tig, trigger factor; Provisional	NA|418aa|down_4|NZ_CP014912.1_2517358_2518612_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|200aa|down_5|NZ_CP014912.1_2518806_2519406_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|102aa|down_6|NZ_CP014912.1_2519402_2519708_+	cd11541, NTP-PPase_u4, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|308aa|down_7|NZ_CP014912.1_2519792_2520716_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|435aa|down_8|NZ_CP014912.1_2521059_2522364_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|461aa|down_9|NZ_CP014912.1_2522363_2523746_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	13	2533337-2533473	13	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	GTAGCCAAGAAAGGCGCGGCCTTCAACCAGATGTGGATTTGGT	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|57aa|up_5|NZ_CP014912.1_2524928_2525099_-,NA|253aa|down_0|NZ_CP014912.1_2533692_2534451_-,NA|89aa|down_1|NZ_CP014912.1_2534465_2534732_-	NA|308aa|up_9|NZ_CP014912.1_2519792_2520716_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|435aa|up_8|NZ_CP014912.1_2521059_2522364_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|461aa|up_7|NZ_CP014912.1_2522363_2523746_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|200aa|up_6|NZ_CP014912.1_2523857_2524457_+	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|57aa|up_5|NZ_CP014912.1_2524928_2525099_-	NA	NA|496aa|up_4|NZ_CP014912.1_2525332_2526820_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_3|NZ_CP014912.1_2526827_2527559_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|601aa|up_2|NZ_CP014912.1_2528028_2529831_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|433aa|up_1|NZ_CP014912.1_2529942_2531241_+	PRK12297, obgE, GTPase CgtA; Reviewed	NA|639aa|up_0|NZ_CP014912.1_2531293_2533210_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|253aa|down_0|NZ_CP014912.1_2533692_2534451_-	NA	NA|89aa|down_1|NZ_CP014912.1_2534465_2534732_-	NA	NA|315aa|down_2|NZ_CP014912.1_2534991_2535936_+	TIGR02651, Ribonuclease_Z, ribonuclease Z	NA|119aa|down_3|NZ_CP014912.1_2535949_2536306_+	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown]	NA|776aa|down_4|NZ_CP014912.1_2536302_2538630_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|173aa|down_5|NZ_CP014912.1_2538645_2539164_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|123aa|down_6|NZ_CP014912.1_2539969_2540338_-	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|138aa|down_7|NZ_CP014912.1_2540273_2540687_-	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|183aa|down_8|NZ_CP014912.1_2541321_2541870_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|148aa|down_9|NZ_CP014912.1_2542157_2542601_+	cd00293, USP_Like, Usp: Universal stress protein family
GCF_001702155.1_ASM170215v1	NZ_CP014912	Lactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome	14	2732175-2732279	14	CRISPRCasFinder	no		csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	Orphan	GCCTTGCGGAGCACGTTTGGTCTCGAGGACAGTAGAAA	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA,NA	NA|163aa|up_9|NZ_CP014912.1_2722838_2723327_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|230aa|up_8|NZ_CP014912.1_2723589_2724279_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|280aa|up_7|NZ_CP014912.1_2724429_2725269_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|303aa|up_6|NZ_CP014912.1_2725454_2726363_+	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|204aa|up_5|NZ_CP014912.1_2726375_2726987_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	NA|73aa|up_4|NZ_CP014912.1_2727017_2727236_+	PRK13672, PRK13672, hypothetical protein; Provisional	NA|285aa|up_3|NZ_CP014912.1_2727252_2728107_+	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF	NA|257aa|up_2|NZ_CP014912.1_2728099_2728870_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|290aa|up_1|NZ_CP014912.1_2728928_2729798_+	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|701aa|up_0|NZ_CP014912.1_2729968_2732071_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|108aa|down_0|NZ_CP014912.1_2732490_2732814_-	cd11523, NTP-PPase, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|304aa|down_1|NZ_CP014912.1_2733098_2734010_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|175aa|down_2|NZ_CP014912.1_2734031_2734556_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|472aa|down_3|NZ_CP014912.1_2734586_2736002_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|354aa|down_4|NZ_CP014912.1_2736180_2737242_-	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)	NA|293aa|down_5|NZ_CP014912.1_2737537_2738416_+	cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX	NA|225aa|down_6|NZ_CP014912.1_2738877_2739552_-	PRK14392, PRK14392, glycerol-3-phosphate acyltransferase	NA|663aa|down_7|NZ_CP014912.1_2739641_2741630_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|814aa|down_8|NZ_CP014912.1_2741647_2744089_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|310aa|down_9|NZ_CP014912.1_2745430_2746360_+	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional
GCF_001702155.1_ASM170215v1	NZ_CP014913	Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence	1	22472-22573	1	CRISPRCasFinder	no	cas14j,csa3	cas14j,csa3	Type I-A	GTCTATTTTTTAGACTTTCGCTCGTAGCAAGGGTTT	36	0	0	NA	NA	NA	1	1	TypeI-A,TypeV	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|78aa|up_7|NZ_CP014913.1_11913_12147_+,NA|91aa|up_6|NZ_CP014913.1_12647_12920_-,NA|241aa|up_3|NZ_CP014913.1_14318_15041_-,NA|188aa|down_0|NZ_CP014913.1_23711_24275_+	NA|149aa|up_9|NZ_CP014913.1_10624_11071_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|263aa|up_8|NZ_CP014913.1_11132_11921_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|78aa|up_7|NZ_CP014913.1_11913_12147_+	NA	NA|91aa|up_6|NZ_CP014913.1_12647_12920_-	NA	NA|185aa|up_5|NZ_CP014913.1_12919_13474_-	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|77aa|up_4|NZ_CP014913.1_14130_14361_-	pfam10881, DUF2726, Protein of unknown function (DUF2726)	NA|241aa|up_3|NZ_CP014913.1_14318_15041_-	NA	NA|184aa|up_2|NZ_CP014913.1_16712_17264_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|881aa|up_1|NZ_CP014913.1_17394_20037_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|390aa|up_0|NZ_CP014913.1_20417_21587_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|188aa|down_0|NZ_CP014913.1_23711_24275_+	NA	NA|297aa|down_1|NZ_CP014913.1_24308_25199_+	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|389aa|down_2|NZ_CP014913.1_25204_26371_+	cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I domain	NA|119aa|down_3|NZ_CP014913.1_26493_26850_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|93aa|down_4|NZ_CP014913.1_26849_27128_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|196aa|down_5|NZ_CP014913.1_27204_27792_+	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|124aa|down_6|NZ_CP014913.1_27843_28215_+	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|90aa|down_7|NZ_CP014913.1_28201_28471_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|139aa|down_8|NZ_CP014913.1_28694_29111_-	TIGR02691, Protein_ArsC, arsenate reductase (thioredoxin)	NA|112aa|down_9|NZ_CP014913.1_29133_29469_-	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD
GCF_001702155.1_ASM170215v1	NZ_CP014914	Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-2, complete sequence	1	8358-8515	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTT	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	NA|80aa|up_1|NZ_CP014914.1_6789_7029_+,NA|126aa|up_0|NZ_CP014914.1_7053_7431_+,NA|62aa|down_1|NZ_CP014914.1_9776_9962_+,NA|93aa|down_3|NZ_CP014914.1_10628_10907_-,NA|76aa|down_4|NZ_CP014914.1_10929_11157_-,NA|72aa|down_7|NZ_CP014914.1_15226_15442_+,NA|375aa|down_8|NZ_CP014914.1_15445_16570_+,NA|30aa|down_9|NZ_CP014914.1_16726_16816_-	NA|NA	NA	NA|NA	NA	NA|365aa|up_7|NZ_CP014914.1_463_1558_+	PRK13551, PRK13551, agmatine deiminase; Provisional	NA|323aa|up_6|NZ_CP014914.1_1628_2597_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|263aa|up_5|NZ_CP014914.1_2628_3416_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|370aa|up_4|NZ_CP014914.1_3482_4592_+	TIGR03380, Putative_agmatine_deiminase, agmatine deiminase	NA|271aa|up_3|NZ_CP014914.1_4588_5401_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|264aa|up_2|NZ_CP014914.1_5926_6718_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|80aa|up_1|NZ_CP014914.1_6789_7029_+	NA	NA|126aa|up_0|NZ_CP014914.1_7053_7431_+	NA	NA|94aa|down_0|NZ_CP014914.1_9448_9730_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|62aa|down_1|NZ_CP014914.1_9776_9962_+	NA	NA|227aa|down_2|NZ_CP014914.1_9958_10639_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|93aa|down_3|NZ_CP014914.1_10628_10907_-	NA	NA|76aa|down_4|NZ_CP014914.1_10929_11157_-	NA	NA|688aa|down_5|NZ_CP014914.1_11410_13474_+	pfam03389, MobA_MobL, MobA/MobL family	NA|504aa|down_6|NZ_CP014914.1_13593_15105_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|72aa|down_7|NZ_CP014914.1_15226_15442_+	NA	NA|375aa|down_8|NZ_CP014914.1_15445_16570_+	NA	NA|30aa|down_9|NZ_CP014914.1_16726_16816_-	NA
