assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	1	309110-309242	1	CRISPRCasFinder	no	DEDDh,csa3	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Type I-A	CCCCCTCTCCCCAACCCCTCTCCCGCAAGGGGAGAGGGGCT	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA|228aa|down_9|NZ_CP016756.1_326674_327358_+	NA|176aa|up_9|NZ_CP016756.1_298897_299425_+	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	NA|425aa|up_8|NZ_CP016756.1_299475_300750_+	TIGR01814, kynureninase, kynureninase	NA|457aa|up_7|NZ_CP016756.1_300768_302139_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	DEDDh|480aa|up_6|NZ_CP016756.1_302138_303578_+	PRK11779, sbcB, exonuclease I; Provisional	NA|229aa|up_5|NZ_CP016756.1_303574_304261_+	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	NA|158aa|up_4|NZ_CP016756.1_304332_304806_+	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	NA|185aa|up_3|NZ_CP016756.1_304825_305380_+	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|458aa|up_2|NZ_CP016756.1_305395_306769_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|315aa|up_1|NZ_CP016756.1_307241_308186_-	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|255aa|up_0|NZ_CP016756.1_308285_309050_-	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|1661aa|down_0|NZ_CP016756.1_309398_314381_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|221aa|down_1|NZ_CP016756.1_314627_315290_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|394aa|down_2|NZ_CP016756.1_315289_316471_+	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1055aa|down_3|NZ_CP016756.1_316483_319648_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|383aa|down_4|NZ_CP016756.1_319847_320996_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	csa3|310aa|down_5|NZ_CP016756.1_321123_322053_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|360aa|down_6|NZ_CP016756.1_322074_323154_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|201aa|down_7|NZ_CP016756.1_323164_323767_+	PRK07578, PRK07578, short chain dehydrogenase; Provisional	NA|945aa|down_8|NZ_CP016756.1_323766_326601_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|228aa|down_9|NZ_CP016756.1_326674_327358_+	NA
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	2	340635-340779	1	PILER-CR	no	csa3	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Type I-A	GTGGGCTCGGGCGATGTCGAGCTCAACGGCGTGC	34	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|81aa|up_3|NZ_CP016756.1_337675_337918_+,NA|328aa|up_0|NZ_CP016756.1_339149_340133_+,NA|143aa|down_1|NZ_CP016756.1_341651_342080_+	NA|688aa|up_9|NZ_CP016756.1_331498_333562_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|225aa|up_8|NZ_CP016756.1_333624_334299_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|80aa|up_7|NZ_CP016756.1_334307_334547_-	PRK00846, PRK00846, hypothetical protein; Provisional	NA|450aa|up_6|NZ_CP016756.1_334539_335889_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|327aa|up_5|NZ_CP016756.1_335914_336895_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|202aa|up_4|NZ_CP016756.1_336980_337586_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|81aa|up_3|NZ_CP016756.1_337675_337918_+	NA	NA|121aa|up_2|NZ_CP016756.1_337921_338284_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|291aa|up_1|NZ_CP016756.1_338280_339153_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|328aa|up_0|NZ_CP016756.1_339149_340133_+	NA	NA|195aa|down_0|NZ_CP016756.1_341009_341594_+	pfam11101, DUF2884, Protein of unknown function (DUF2884)	NA|143aa|down_1|NZ_CP016756.1_341651_342080_+	NA	NA|470aa|down_2|NZ_CP016756.1_342254_343664_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|461aa|down_3|NZ_CP016756.1_343867_345250_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|492aa|down_4|NZ_CP016756.1_345643_347119_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_5|NZ_CP016756.1_347115_348021_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|944aa|down_6|NZ_CP016756.1_348196_351028_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|404aa|down_7|NZ_CP016756.1_351070_352282_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|475aa|down_8|NZ_CP016756.1_352408_353833_+	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|198aa|down_9|NZ_CP016756.1_353958_354552_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	3	789618-789694	2	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Type I-A	ACATGTAGTGCCGAGCCATGCTCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|83aa|up_9|NZ_CP016756.1_777941_778190_+,NA|200aa|up_6|NZ_CP016756.1_781457_782057_+,NA|166aa|up_2|NZ_CP016756.1_784642_785140_+,NA|87aa|down_5|NZ_CP016756.1_795372_795633_+	NA|83aa|up_9|NZ_CP016756.1_777941_778190_+	NA	NA|264aa|up_8|NZ_CP016756.1_778283_779075_-	pfam14257, DUF4349, Domain of unknown function (DUF4349)	NA|601aa|up_7|NZ_CP016756.1_779394_781197_+	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|200aa|up_6|NZ_CP016756.1_781457_782057_+	NA	NA|329aa|up_5|NZ_CP016756.1_782278_783265_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|194aa|up_4|NZ_CP016756.1_783381_783963_+	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|152aa|up_3|NZ_CP016756.1_784122_784578_+	pfam08818, DUF1801, Domain of unknown function (DU1801)	NA|166aa|up_2|NZ_CP016756.1_784642_785140_+	NA	NA|611aa|up_1|NZ_CP016756.1_785473_787306_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|517aa|up_0|NZ_CP016756.1_787516_789067_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|down_0|NZ_CP016756.1_789826_790654_+	pfam01904, DUF72, Protein of unknown function DUF72	NA|307aa|down_1|NZ_CP016756.1_790700_791621_+	pfam00892, EamA, EamA-like transporter family	NA|355aa|down_2|NZ_CP016756.1_791807_792872_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|241aa|down_3|NZ_CP016756.1_792998_793721_-	PRK10475, PRK10475, 23S rRNA pseudouridine(2604) synthase RluF	NA|559aa|down_4|NZ_CP016756.1_793775_795452_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|87aa|down_5|NZ_CP016756.1_795372_795633_+	NA	NA|661aa|down_6|NZ_CP016756.1_795638_797621_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|88aa|down_7|NZ_CP016756.1_797816_798080_+	pfam13275, S4_2, S4 domain	NA|393aa|down_8|NZ_CP016756.1_798322_799501_-	PRK09126, PRK09126, FAD-dependent hydroxylase	NA|186aa|down_9|NZ_CP016756.1_799644_800202_-	pfam13211, DUF4019, Protein of unknown function (DUF4019)
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	4	1045148-1045254	3	CRISPRCasFinder	no	DinG	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Type IV-A	CAGCCGAGCATGGCTCGGCTCTAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|172aa|up_3|NZ_CP016756.1_1038943_1039459_+,NA|349aa|down_6|NZ_CP016756.1_1071023_1072070_+	DinG|704aa|up_9|NZ_CP016756.1_1027667_1029779_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|178aa|up_8|NZ_CP016756.1_1029927_1030461_-	sd00006, TPR, Tetratricopeptide repeat	NA|809aa|up_7|NZ_CP016756.1_1030469_1032896_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|701aa|up_6|NZ_CP016756.1_1032992_1035095_+	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|477aa|up_5|NZ_CP016756.1_1035164_1036595_-	PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional	NA|719aa|up_4|NZ_CP016756.1_1036725_1038882_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|172aa|up_3|NZ_CP016756.1_1038943_1039459_+	NA	NA|174aa|up_2|NZ_CP016756.1_1039531_1040053_+	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|1401aa|up_1|NZ_CP016756.1_1040061_1044264_-	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	NA|199aa|up_0|NZ_CP016756.1_1044352_1044949_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|601aa|down_0|NZ_CP016756.1_1045347_1047150_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|539aa|down_1|NZ_CP016756.1_1047184_1048801_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|5684aa|down_2|NZ_CP016756.1_1048815_1065867_-	NF012204, adhes_FxxPxG, leukotoxin LktA family filamentous adhesin	NA|252aa|down_3|NZ_CP016756.1_1065973_1066729_-	pfam07277, SapC, SapC	NA|918aa|down_4|NZ_CP016756.1_1067267_1070021_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|184aa|down_5|NZ_CP016756.1_1070041_1070593_-	TIGR02999, Sig-70_X6, RNA polymerase sigma factor, TIGR02999 family	NA|349aa|down_6|NZ_CP016756.1_1071023_1072070_+	NA	NA|224aa|down_7|NZ_CP016756.1_1072445_1073117_-	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|230aa|down_8|NZ_CP016756.1_1073195_1073885_-	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type	NA|270aa|down_9|NZ_CP016756.1_1073918_1074728_-	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	5	1111872-1111953	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	CCCCTCTCCCGCATGCGGGAGAGGGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA|294aa|down_3|NZ_CP016756.1_1117328_1118210_-	NA|415aa|up_9|NZ_CP016756.1_1097593_1098838_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|298aa|up_8|NZ_CP016756.1_1098910_1099804_-	PRK15442, PRK15442, beta-lactamase TEM; Provisional	NA|292aa|up_7|NZ_CP016756.1_1099986_1100862_+	cd08484, PBP2_LTTR_beta_lactamase, The C-terminal substrate-domain of LysR-type transcriptional regulators for beta-lactamase genes, contains the type 2 periplasmic binding fold	NA|625aa|up_6|NZ_CP016756.1_1100992_1102867_-	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional	NA|793aa|up_5|NZ_CP016756.1_1103178_1105557_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|571aa|up_4|NZ_CP016756.1_1105890_1107603_+	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|293aa|up_3|NZ_CP016756.1_1107578_1108457_-	pfam06445, GyrI-like, GyrI-like small molecule binding domain	NA|309aa|up_2|NZ_CP016756.1_1108500_1109427_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|217aa|up_1|NZ_CP016756.1_1109548_1110199_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|429aa|up_0|NZ_CP016756.1_1110434_1111721_-	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA|863aa|down_0|NZ_CP016756.1_1112016_1114605_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|271aa|down_1|NZ_CP016756.1_1114780_1115593_-	pfam11219, DUF3014, Protein of unknown function (DUF3014)	NA|526aa|down_2|NZ_CP016756.1_1115686_1117264_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|294aa|down_3|NZ_CP016756.1_1117328_1118210_-	NA	NA|158aa|down_4|NZ_CP016756.1_1118274_1118748_-	pfam12098, DUF3574, Protein of unknown function (DUF3574)	NA|811aa|down_5|NZ_CP016756.1_1118930_1121363_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|444aa|down_6|NZ_CP016756.1_1121701_1123033_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|249aa|down_7|NZ_CP016756.1_1123346_1124093_+	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|593aa|down_8|NZ_CP016756.1_1124145_1125924_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|456aa|down_9|NZ_CP016756.1_1125920_1127288_+	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	6	1139934-1140069	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	CCCCTCTCCCGTTTACGGGAGAGGGGTTGGGGTGAGGGCGCTTT	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA	NA|172aa|up_9|NZ_CP016756.1_1127841_1128357_-	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|260aa|up_8|NZ_CP016756.1_1128377_1129157_-	PRK10723, PRK10723, polyphenol oxidase	NA|330aa|up_7|NZ_CP016756.1_1129156_1130146_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|295aa|up_6|NZ_CP016756.1_1130263_1131148_+	COG4105, ComL, DNA uptake lipoprotein [General function prediction only]	NA|546aa|up_5|NZ_CP016756.1_1131567_1133205_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|127aa|up_4|NZ_CP016756.1_1133206_1133587_-	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|292aa|up_3|NZ_CP016756.1_1134466_1135342_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|390aa|up_2|NZ_CP016756.1_1135363_1136533_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|542aa|up_1|NZ_CP016756.1_1136790_1138416_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|468aa|up_0|NZ_CP016756.1_1138474_1139878_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|577aa|down_0|NZ_CP016756.1_1140117_1141848_-	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|138aa|down_1|NZ_CP016756.1_1142682_1143096_-	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|419aa|down_2|NZ_CP016756.1_1143632_1144889_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|289aa|down_3|NZ_CP016756.1_1144892_1145759_+	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|206aa|down_4|NZ_CP016756.1_1145814_1146432_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|447aa|down_5|NZ_CP016756.1_1146594_1147935_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_6|NZ_CP016756.1_1147927_1148605_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|292aa|down_7|NZ_CP016756.1_1148967_1149843_-	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase	NA|596aa|down_8|NZ_CP016756.1_1150300_1152088_-	cd01847, Triacylglycerol_lipase_like, Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases	NA|67aa|down_9|NZ_CP016756.1_1152265_1152466_+	PRK05659, PRK05659, sulfur carrier protein ThiS; Validated
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	7	1275445-1275532	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	AGCGTGGTGCCGAGCCATGCTCGGCAG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|110aa|up_2|NZ_CP016756.1_1272336_1272666_-,NA|225aa|down_1|NZ_CP016756.1_1276571_1277246_+,NA|158aa|down_8|NZ_CP016756.1_1285546_1286020_-	NA|283aa|up_9|NZ_CP016756.1_1261004_1261853_+	COG2912, COG2912, Uncharacterized conserved protein [Function unknown]	NA|64aa|up_8|NZ_CP016756.1_1262083_1262275_-	COG1773, COG1773, Rubredoxin [Energy production and conversion]	NA|209aa|up_7|NZ_CP016756.1_1262344_1262971_+	PRK00043, thiE, thiamine phosphate synthase	NA|431aa|up_6|NZ_CP016756.1_1263145_1264438_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|131aa|up_5|NZ_CP016756.1_1264713_1265106_-	cd13922, Azurin, Azurin is a redox partner for enzymes such as nitrite reductase or arsenite oxidase	NA|198aa|up_4|NZ_CP016756.1_1265302_1265896_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|2042aa|up_3|NZ_CP016756.1_1265972_1272098_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|110aa|up_2|NZ_CP016756.1_1272336_1272666_-	NA	NA|409aa|up_1|NZ_CP016756.1_1273169_1274396_-	PRK04612, argD, acetylornithine transaminase	NA|288aa|up_0|NZ_CP016756.1_1274466_1275330_+	pfam00520, Ion_trans, Ion transport protein	NA|272aa|down_0|NZ_CP016756.1_1275613_1276429_-	PRK08278, PRK08278, SDR family oxidoreductase	NA|225aa|down_1|NZ_CP016756.1_1276571_1277246_+	NA	NA|221aa|down_2|NZ_CP016756.1_1277370_1278033_-	PRK12274, PRK12274, serine/threonine protein kinase; Provisional	NA|666aa|down_3|NZ_CP016756.1_1278153_1280151_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|203aa|down_4|NZ_CP016756.1_1280500_1281109_-	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]	NA|455aa|down_5|NZ_CP016756.1_1281240_1282605_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|188aa|down_6|NZ_CP016756.1_1282935_1283499_-	PRK00279, adk, adenylate kinase; Reviewed	NA|419aa|down_7|NZ_CP016756.1_1283641_1284898_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|158aa|down_8|NZ_CP016756.1_1285546_1286020_-	NA	NA|676aa|down_9|NZ_CP016756.1_1286296_1288324_+	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	8	1400652-1400759	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	GTCAGCTTCGCGGCTTACGCCGCTCC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA|273aa|down_8|NZ_CP016756.1_1410037_1410856_-	NA|321aa|up_9|NZ_CP016756.1_1386568_1387531_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|504aa|up_8|NZ_CP016756.1_1387962_1389474_-	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|570aa|up_7|NZ_CP016756.1_1389728_1391438_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|291aa|up_6|NZ_CP016756.1_1392353_1393226_-	cd16310, Mbl1b-like_MBL-B3, Caulobacter crescentus Mbl1b and related metallo-beta-lactamases, subclass B3; MBL-fold metallo-hydrolase domain	NA|562aa|up_5|NZ_CP016756.1_1393549_1395235_+	sd00006, TPR, Tetratricopeptide repeat	NA|213aa|up_4|NZ_CP016756.1_1395299_1395938_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|455aa|up_3|NZ_CP016756.1_1396120_1397485_-	PLN02611, PLN02611, glutamate--cysteine ligase	NA|233aa|up_2|NZ_CP016756.1_1397688_1398387_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|278aa|up_1|NZ_CP016756.1_1398390_1399224_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|325aa|up_0|NZ_CP016756.1_1399325_1400300_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|262aa|down_0|NZ_CP016756.1_1401570_1402356_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|216aa|down_1|NZ_CP016756.1_1402450_1403098_+	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|271aa|down_2|NZ_CP016756.1_1403217_1404030_+	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|246aa|down_3|NZ_CP016756.1_1404101_1404839_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|292aa|down_4|NZ_CP016756.1_1404848_1405724_-	PRK10532, PRK10532, threonine and homoserine efflux system; Provisional	NA|137aa|down_5|NZ_CP016756.1_1405863_1406274_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|649aa|down_6|NZ_CP016756.1_1406456_1408403_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|412aa|down_7|NZ_CP016756.1_1408580_1409816_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|273aa|down_8|NZ_CP016756.1_1410037_1410856_-	NA	NA|356aa|down_9|NZ_CP016756.1_1411215_1412283_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	9	1644989-1645132	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	CTGTAGTGCCGAGCCATGCTCGGCAG	26	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA|64aa|down_6|NZ_CP016756.1_1651978_1652170_-	NA|205aa|up_9|NZ_CP016756.1_1633558_1634173_-	TIGR01711, Type_II_secretion_system_protein_J, type II secretion system protein J	NA|121aa|up_8|NZ_CP016756.1_1634169_1634532_-	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|171aa|up_7|NZ_CP016756.1_1634528_1635041_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|143aa|up_6|NZ_CP016756.1_1635037_1635466_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|402aa|up_5|NZ_CP016756.1_1635473_1636679_-	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|503aa|up_4|NZ_CP016756.1_1636707_1638216_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|155aa|up_3|NZ_CP016756.1_1638536_1639001_+	pfam11356, T2SSC, Type II secretion system protein C	NA|640aa|up_2|NZ_CP016756.1_1638997_1640917_+	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|969aa|up_1|NZ_CP016756.1_1641008_1643915_+	pfam10462, Peptidase_M66, Peptidase M66	NA|185aa|up_0|NZ_CP016756.1_1643961_1644516_+	pfam11356, T2SSC, Type II secretion system protein C	NA|549aa|down_0|NZ_CP016756.1_1645326_1646973_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|96aa|down_1|NZ_CP016756.1_1647058_1647346_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|108aa|down_2|NZ_CP016756.1_1647835_1648159_+	pfam03091, CutA1, CutA1 divalent ion tolerance protein	NA|787aa|down_3|NZ_CP016756.1_1648162_1650523_+	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	NA|197aa|down_4|NZ_CP016756.1_1650522_1651113_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|101aa|down_5|NZ_CP016756.1_1651502_1651805_-	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|64aa|down_6|NZ_CP016756.1_1651978_1652170_-	NA	NA|504aa|down_7|NZ_CP016756.1_1652172_1653684_-	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c	NA|308aa|down_8|NZ_CP016756.1_1653793_1654717_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|95aa|down_9|NZ_CP016756.1_1654970_1655255_+	cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	10	2115520-2115660	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	CTGTAGTACCGAGCCATGCTCGGCAGGGGCTTTCCCGGTAA	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|186aa|up_9|NZ_CP016756.1_2103322_2103880_-,NA|312aa|up_8|NZ_CP016756.1_2104022_2104958_-,NA|296aa|up_6|NZ_CP016756.1_2106487_2107375_+,NA	NA|186aa|up_9|NZ_CP016756.1_2103322_2103880_-	NA	NA|312aa|up_8|NZ_CP016756.1_2104022_2104958_-	NA	NA|432aa|up_7|NZ_CP016756.1_2105101_2106397_-	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase	NA|296aa|up_6|NZ_CP016756.1_2106487_2107375_+	NA	NA|205aa|up_5|NZ_CP016756.1_2107768_2108383_-	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|191aa|up_4|NZ_CP016756.1_2108428_2109001_-	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|828aa|up_3|NZ_CP016756.1_2109119_2111603_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|479aa|up_2|NZ_CP016756.1_2111806_2113243_-	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|352aa|up_1|NZ_CP016756.1_2113235_2114291_-	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|249aa|up_0|NZ_CP016756.1_2114319_2115066_-	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|472aa|down_0|NZ_CP016756.1_2115769_2117185_-	PRK10666, PRK10666, ammonium transporter AmtB	NA|113aa|down_1|NZ_CP016756.1_2117273_2117612_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|470aa|down_2|NZ_CP016756.1_2117976_2119386_-	PRK09469, glnA, glutamate--ammonia ligase	NA|265aa|down_3|NZ_CP016756.1_2119599_2120394_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|270aa|down_4|NZ_CP016756.1_2120477_2121287_+	pfam14302, DUF4377, Domain of unknown function (DUF4377)	NA|204aa|down_5|NZ_CP016756.1_2121544_2122156_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|690aa|down_6|NZ_CP016756.1_2122169_2124239_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|329aa|down_7|NZ_CP016756.1_2124296_2125283_-	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|264aa|down_8|NZ_CP016756.1_2125340_2126132_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|846aa|down_9|NZ_CP016756.1_2126377_2128915_+	PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	11	2379284-2379385	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	CAGATCGCAGCAGGGCCGCTTTTGCCCC	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|292aa|up_5|NZ_CP016756.1_2373471_2374347_+,NA	NA|338aa|up_9|NZ_CP016756.1_2367245_2368259_-	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|777aa|up_8|NZ_CP016756.1_2368428_2370759_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|369aa|up_7|NZ_CP016756.1_2370884_2371991_-	smart00636, Glyco_18, Glyco_18 domain	NA|279aa|up_6|NZ_CP016756.1_2372341_2373178_-	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases	NA|292aa|up_5|NZ_CP016756.1_2373471_2374347_+	NA	NA|395aa|up_4|NZ_CP016756.1_2374358_2375543_+	pfam16024, DUF4785, Domain of unknown function (DUF4785)	NA|275aa|up_3|NZ_CP016756.1_2375582_2376407_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|401aa|up_2|NZ_CP016756.1_2376534_2377737_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|110aa|up_1|NZ_CP016756.1_2377733_2378063_+	pfam13499, EF-hand_7, EF-hand domain pair	NA|271aa|up_0|NZ_CP016756.1_2378379_2379192_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|535aa|down_0|NZ_CP016756.1_2379625_2381230_+	PRK13273, mdoD, glucan biosynthesis protein D; Provisional	NA|207aa|down_1|NZ_CP016756.1_2381437_2382058_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|662aa|down_2|NZ_CP016756.1_2382181_2384167_+	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|174aa|down_3|NZ_CP016756.1_2384408_2384930_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|222aa|down_4|NZ_CP016756.1_2385055_2385721_-	pfam04337, DUF480, Protein of unknown function, DUF480	NA|301aa|down_5|NZ_CP016756.1_2385911_2386814_+	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily	NA|240aa|down_6|NZ_CP016756.1_2386810_2387530_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|877aa|down_7|NZ_CP016756.1_2388821_2391452_+	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB	NA|68aa|down_8|NZ_CP016756.1_2392032_2392236_-	pfam04325, DUF465, Protein of unknown function (DUF465)	NA|310aa|down_9|NZ_CP016756.1_2392302_2393232_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	12	2395494-2395600	11	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	GCTGCAGGCATTGGAACAGCTGCCAAGTGCA	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA	NA|662aa|up_9|NZ_CP016756.1_2382181_2384167_+	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|174aa|up_8|NZ_CP016756.1_2384408_2384930_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|222aa|up_7|NZ_CP016756.1_2385055_2385721_-	pfam04337, DUF480, Protein of unknown function, DUF480	NA|301aa|up_6|NZ_CP016756.1_2385911_2386814_+	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily	NA|240aa|up_5|NZ_CP016756.1_2386810_2387530_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|877aa|up_4|NZ_CP016756.1_2388821_2391452_+	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB	NA|68aa|up_3|NZ_CP016756.1_2392032_2392236_-	pfam04325, DUF465, Protein of unknown function (DUF465)	NA|310aa|up_2|NZ_CP016756.1_2392302_2393232_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|303aa|up_1|NZ_CP016756.1_2393373_2394282_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|264aa|up_0|NZ_CP016756.1_2394335_2395127_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|525aa|down_0|NZ_CP016756.1_2395846_2397421_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|288aa|down_1|NZ_CP016756.1_2398551_2399415_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|321aa|down_2|NZ_CP016756.1_2399411_2400374_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|303aa|down_3|NZ_CP016756.1_2400606_2401515_+	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|76aa|down_4|NZ_CP016756.1_2401589_2401817_+	PRK04561, tatA, twin arginine translocase protein A; Provisional	NA|249aa|down_5|NZ_CP016756.1_2402338_2403085_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|1201aa|down_6|NZ_CP016756.1_2403182_2406785_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|289aa|down_7|NZ_CP016756.1_2406769_2407636_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|188aa|down_8|NZ_CP016756.1_2407650_2408214_+	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB	NA|335aa|down_9|NZ_CP016756.1_2408204_2409209_+	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	13	2664056-2664139	12	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	GTAGTGCCGAGCCATGCTCGGCAGGGGC	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|98aa|up_9|NZ_CP016756.1_2650974_2651268_+,NA|46aa|down_6|NZ_CP016756.1_2674061_2674199_+	NA|98aa|up_9|NZ_CP016756.1_2650974_2651268_+	NA	NA|311aa|up_8|NZ_CP016756.1_2651353_2652286_+	cd07726, ST1585-like_MBL-fold, uncharacterized subgroup which includes Sulfolobus tokodaii ST1585 protein; MBL-fold metallo hydrolase domain	NA|551aa|up_7|NZ_CP016756.1_2652735_2654388_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|445aa|up_6|NZ_CP016756.1_2654527_2655862_-	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|301aa|up_5|NZ_CP016756.1_2656060_2656963_+	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|304aa|up_4|NZ_CP016756.1_2656959_2657871_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|124aa|up_3|NZ_CP016756.1_2657995_2658367_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|570aa|up_2|NZ_CP016756.1_2658673_2660383_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|218aa|up_1|NZ_CP016756.1_2660444_2661098_-	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|448aa|up_0|NZ_CP016756.1_2661144_2662488_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|231aa|down_0|NZ_CP016756.1_2664256_2664949_-	pfam01694, Rhomboid, Rhomboid family	NA|483aa|down_1|NZ_CP016756.1_2665150_2666599_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|1073aa|down_2|NZ_CP016756.1_2667435_2670654_-	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|158aa|down_3|NZ_CP016756.1_2670944_2671418_+	pfam10003, DUF2244, Integral membrane protein (DUF2244)	NA|314aa|down_4|NZ_CP016756.1_2671435_2672377_+	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II	NA|537aa|down_5|NZ_CP016756.1_2672439_2674050_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|46aa|down_6|NZ_CP016756.1_2674061_2674199_+	NA	NA|199aa|down_7|NZ_CP016756.1_2674195_2674792_+	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional	NA|292aa|down_8|NZ_CP016756.1_2674814_2675690_+	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|73aa|down_9|NZ_CP016756.1_2675736_2675955_-	pfam11137, DUF2909, Protein of unknown function (DUF2909)
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	14	2786210-2786306	13	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	CACCCCAACCCCTCTCCCGGAGGGAGAAGGGCTTT	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|372aa|up_2|NZ_CP016756.1_2782884_2784000_+,NA	NA|459aa|up_9|NZ_CP016756.1_2774688_2776065_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|118aa|up_8|NZ_CP016756.1_2776061_2776415_-	cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p	NA|360aa|up_7|NZ_CP016756.1_2776416_2777496_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|363aa|up_6|NZ_CP016756.1_2777488_2778577_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|287aa|up_5|NZ_CP016756.1_2779382_2780243_+	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase	NA|503aa|up_4|NZ_CP016756.1_2780449_2781958_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|198aa|up_3|NZ_CP016756.1_2781968_2782562_+	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|372aa|up_2|NZ_CP016756.1_2782884_2784000_+	NA	NA|165aa|up_1|NZ_CP016756.1_2784013_2784508_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|357aa|up_0|NZ_CP016756.1_2784675_2785746_+	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|433aa|down_0|NZ_CP016756.1_2786333_2787632_+	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	NA|187aa|down_1|NZ_CP016756.1_2787633_2788194_-	PRK08724, fliD, flagellar filament capping protein FliD	NA|200aa|down_2|NZ_CP016756.1_2788323_2788923_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|318aa|down_3|NZ_CP016756.1_2789000_2789954_+	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein	NA|112aa|down_4|NZ_CP016756.1_2790060_2790396_-	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|95aa|down_5|NZ_CP016756.1_2790392_2790677_-	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|169aa|down_6|NZ_CP016756.1_2790673_2791180_-	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|517aa|down_7|NZ_CP016756.1_2791176_2792727_-	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|127aa|down_8|NZ_CP016756.1_2792723_2793104_-	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|943aa|down_9|NZ_CP016756.1_2793103_2795932_-	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	15	3266855-3266997	14	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	GTAGTGCCGAGCCATGCTCGGCAGGGGCTTCATAAGCGCTACATCGGATGGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA|100aa|down_6|NZ_CP016756.1_3274573_3274873_-,NA|166aa|down_9|NZ_CP016756.1_3275911_3276409_+	NA|217aa|up_9|NZ_CP016756.1_3256296_3256947_+	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA	NA|170aa|up_8|NZ_CP016756.1_3256950_3257460_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|322aa|up_7|NZ_CP016756.1_3257644_3258610_-	PRK05269, PRK05269, transaldolase B; Provisional	NA|142aa|up_6|NZ_CP016756.1_3258644_3259070_-	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional	NA|313aa|up_5|NZ_CP016756.1_3259332_3260271_-	PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional	NA|531aa|up_4|NZ_CP016756.1_3260435_3262028_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|188aa|up_3|NZ_CP016756.1_3262296_3262860_-	TIGR03137, AhpC, peroxiredoxin	NA|272aa|up_2|NZ_CP016756.1_3263188_3264004_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|418aa|up_1|NZ_CP016756.1_3264231_3265485_+	cd14728, Ere-like, Erythromycin esterase and succinoglycan biosynthesis related proteins	NA|315aa|up_0|NZ_CP016756.1_3265558_3266503_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|272aa|down_0|NZ_CP016756.1_3267039_3267855_-	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism]	NA|184aa|down_1|NZ_CP016756.1_3267847_3268399_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|363aa|down_2|NZ_CP016756.1_3268395_3269484_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|767aa|down_3|NZ_CP016756.1_3270217_3272518_+	pfam07793, DUF1631, Protein of unknown function (DUF1631)	NA|368aa|down_4|NZ_CP016756.1_3272605_3273709_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|141aa|down_5|NZ_CP016756.1_3274145_3274568_-	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|100aa|down_6|NZ_CP016756.1_3274573_3274873_-	NA	NA|176aa|down_7|NZ_CP016756.1_3274920_3275448_-	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated	NA|101aa|down_8|NZ_CP016756.1_3275612_3275915_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|166aa|down_9|NZ_CP016756.1_3275911_3276409_+	NA
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	16	3607922-3608013	15	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	AGGCAGGAGAGGGGAGCGGCGCAGCCG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|147aa|up_8|NZ_CP016756.1_3599966_3600407_-,NA|188aa|down_9|NZ_CP016756.1_3617742_3618306_+	NA|764aa|up_9|NZ_CP016756.1_3597549_3599841_-	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]	NA|147aa|up_8|NZ_CP016756.1_3599966_3600407_-	NA	NA|111aa|up_7|NZ_CP016756.1_3600634_3600967_-	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)	NA|179aa|up_6|NZ_CP016756.1_3600963_3601500_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|419aa|up_5|NZ_CP016756.1_3601892_3603149_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|421aa|up_4|NZ_CP016756.1_3603145_3604408_-	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|255aa|up_3|NZ_CP016756.1_3604407_3605172_-	TIGR01978, Probable_ATP-dependent_transporter_SufC, FeS assembly ATPase SufC	NA|137aa|up_2|NZ_CP016756.1_3605208_3605619_-	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|492aa|up_1|NZ_CP016756.1_3605615_3607091_-	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	NA|149aa|up_0|NZ_CP016756.1_3607110_3607557_-	TIGR02944, conserved_hypothetical_protein, FeS assembly SUF system regulator, gammaproteobacterial	NA|156aa|down_0|NZ_CP016756.1_3608214_3608682_+	cd10518, SET_SETD1-like, SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins	NA|196aa|down_1|NZ_CP016756.1_3608904_3609492_-	pfam07273, DUF1439, Protein of unknown function (DUF1439)	NA|101aa|down_2|NZ_CP016756.1_3609728_3610031_-	pfam12977, DUF3861, Domain of Unknown Function with PDB structure (DUF3861)	NA|137aa|down_3|NZ_CP016756.1_3610245_3610656_-	cd13834, HU_like, DNA-binding proteins similar to HU domains	NA|145aa|down_4|NZ_CP016756.1_3610959_3611394_+	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily	NA|242aa|down_5|NZ_CP016756.1_3611497_3612223_+	PRK11280, PRK11280, hypothetical protein; Provisional	NA|562aa|down_6|NZ_CP016756.1_3612321_3614007_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|787aa|down_7|NZ_CP016756.1_3614135_3616496_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|128aa|down_8|NZ_CP016756.1_3617249_3617633_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|188aa|down_9|NZ_CP016756.1_3617742_3618306_+	NA
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	17	4020653-4020728	16	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	AGGGGAGGGCTGGGGAGGGGTAAG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|96aa|up_8|NZ_CP016756.1_4012074_4012362_-,NA|122aa|up_0|NZ_CP016756.1_4020213_4020579_+,NA|84aa|down_7|NZ_CP016756.1_4029310_4029562_+	NA|364aa|up_9|NZ_CP016756.1_4010986_4012078_-	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|96aa|up_8|NZ_CP016756.1_4012074_4012362_-	NA	NA|129aa|up_7|NZ_CP016756.1_4012549_4012936_+	cd08916, TrHb3_P, Truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 3 (P)	NA|470aa|up_6|NZ_CP016756.1_4013039_4014449_+	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|145aa|up_5|NZ_CP016756.1_4014648_4015083_-	pfam04940, BLUF, Sensors of blue-light using FAD	NA|430aa|up_4|NZ_CP016756.1_4015450_4016740_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|541aa|up_3|NZ_CP016756.1_4016771_4018394_+	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain	NA|411aa|up_2|NZ_CP016756.1_4018505_4019738_-	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	NA|144aa|up_1|NZ_CP016756.1_4019721_4020153_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|122aa|up_0|NZ_CP016756.1_4020213_4020579_+	NA	NA|252aa|down_0|NZ_CP016756.1_4020844_4021600_+	PRK05320, PRK05320, rhodanese superfamily protein; Provisional	NA|332aa|down_1|NZ_CP016756.1_4021713_4022709_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|225aa|down_2|NZ_CP016756.1_4022979_4023654_-	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|448aa|down_3|NZ_CP016756.1_4023637_4024981_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|209aa|down_4|NZ_CP016756.1_4025257_4025884_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|374aa|down_5|NZ_CP016756.1_4025896_4027018_+	pfam01384, PHO4, Phosphate transporter family	NA|630aa|down_6|NZ_CP016756.1_4027263_4029153_-	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	NA|84aa|down_7|NZ_CP016756.1_4029310_4029562_+	NA	NA|555aa|down_8|NZ_CP016756.1_4029693_4031358_+	PRK05380, pyrG, CTP synthetase; Validated	NA|431aa|down_9|NZ_CP016756.1_4031706_4032999_+	PRK00077, eno, enolase; Provisional
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	18	4031368-4031439	17	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	GTAGTGCCGAGCCATGCTCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA|122aa|up_9|NZ_CP016756.1_4020213_4020579_+,NA|84aa|up_1|NZ_CP016756.1_4029310_4029562_+,NA	NA|122aa|up_9|NZ_CP016756.1_4020213_4020579_+	NA	NA|252aa|up_8|NZ_CP016756.1_4020844_4021600_+	PRK05320, PRK05320, rhodanese superfamily protein; Provisional	NA|332aa|up_7|NZ_CP016756.1_4021713_4022709_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|225aa|up_6|NZ_CP016756.1_4022979_4023654_-	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|448aa|up_5|NZ_CP016756.1_4023637_4024981_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|209aa|up_4|NZ_CP016756.1_4025257_4025884_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|374aa|up_3|NZ_CP016756.1_4025896_4027018_+	pfam01384, PHO4, Phosphate transporter family	NA|630aa|up_2|NZ_CP016756.1_4027263_4029153_-	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	NA|84aa|up_1|NZ_CP016756.1_4029310_4029562_+	NA	NA|555aa|up_0|NZ_CP016756.1_4029693_4031358_+	PRK05380, pyrG, CTP synthetase; Validated	NA|431aa|down_0|NZ_CP016756.1_4031706_4032999_+	PRK00077, eno, enolase; Provisional	NA|124aa|down_1|NZ_CP016756.1_4033004_4033376_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|232aa|down_2|NZ_CP016756.1_4033375_4034071_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|167aa|down_3|NZ_CP016756.1_4034117_4034618_+	pfam02542, YgbB, YgbB family	NA|364aa|down_4|NZ_CP016756.1_4034614_4035706_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|180aa|down_5|NZ_CP016756.1_4035926_4036466_-	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|260aa|down_6|NZ_CP016756.1_4036647_4037427_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|226aa|down_7|NZ_CP016756.1_4037423_4038101_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|205aa|down_8|NZ_CP016756.1_4038120_4038735_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|258aa|down_9|NZ_CP016756.1_4038731_4039505_+	PRK10871, nlpD, murein hydrolase activator NlpD
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	19	4232711-4232825	18	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	CCGGAAGCAGAAGCAATCACCAGCCCTG	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA|124aa|down_6|NZ_CP016756.1_4246329_4246701_-	NA|213aa|up_9|NZ_CP016756.1_4215505_4216144_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|508aa|up_8|NZ_CP016756.1_4216397_4217921_+	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase	NA|561aa|up_7|NZ_CP016756.1_4218410_4220093_-	PRK08751, PRK08751, long-chain fatty acid--CoA ligase	NA|151aa|up_6|NZ_CP016756.1_4220198_4220651_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|922aa|up_5|NZ_CP016756.1_4221018_4223784_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|78aa|up_4|NZ_CP016756.1_4224064_4224298_+	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|133aa|up_3|NZ_CP016756.1_4224294_4224693_+	COG1487, VapC, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|864aa|up_2|NZ_CP016756.1_4224731_4227323_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|414aa|up_1|NZ_CP016756.1_4228018_4229260_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|678aa|up_0|NZ_CP016756.1_4229259_4231293_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|524aa|down_0|NZ_CP016756.1_4237453_4239025_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|352aa|down_1|NZ_CP016756.1_4239081_4240137_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|200aa|down_2|NZ_CP016756.1_4240133_4240733_-	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional	NA|282aa|down_3|NZ_CP016756.1_4240729_4241575_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|722aa|down_4|NZ_CP016756.1_4241590_4243756_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|794aa|down_5|NZ_CP016756.1_4243864_4246246_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|124aa|down_6|NZ_CP016756.1_4246329_4246701_-	NA	NA|164aa|down_7|NZ_CP016756.1_4246837_4247329_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|248aa|down_8|NZ_CP016756.1_4247768_4248512_-	pfam07317, YcgR, Flagellar regulator YcgR	NA|251aa|down_9|NZ_CP016756.1_4248876_4249629_+	pfam13649, Methyltransf_25, Methyltransferase domain
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	20	4267001-4267100	19	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	GCGGGAGAGGGGTTGGGGTGAGGGC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA	NA|744aa|up_9|NZ_CP016756.1_4252396_4254628_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|879aa|up_8|NZ_CP016756.1_4255037_4257674_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|749aa|up_7|NZ_CP016756.1_4257791_4260038_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|654aa|up_6|NZ_CP016756.1_4260336_4262298_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|122aa|up_5|NZ_CP016756.1_4262334_4262700_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|103aa|up_4|NZ_CP016756.1_4262696_4263005_-	pfam13466, STAS_2, STAS domain	NA|325aa|up_3|NZ_CP016756.1_4263488_4264463_-	pfam01584, CheW, CheW-like domain	NA|261aa|up_2|NZ_CP016756.1_4264459_4265242_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|316aa|up_1|NZ_CP016756.1_4265241_4266189_-	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed	NA|247aa|up_0|NZ_CP016756.1_4266192_4266933_-	PRK09109, motC, flagellar motor protein; Reviewed	NA|623aa|down_0|NZ_CP016756.1_4267257_4269126_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|207aa|down_1|NZ_CP016756.1_4269129_4269750_-	pfam04344, CheZ, Chemotaxis phosphatase, CheZ	NA|131aa|down_2|NZ_CP016756.1_4269749_4270142_-	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins	NA|250aa|down_3|NZ_CP016756.1_4270155_4270905_-	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated	NA|295aa|down_4|NZ_CP016756.1_4270901_4271786_-	cd02038, FlhG-like, MinD-like ATPase FlhG	NA|599aa|down_5|NZ_CP016756.1_4271772_4273569_-	PRK12727, PRK12727, flagellar biosynthesis protein FlhF	NA|703aa|down_6|NZ_CP016756.1_4273723_4275832_-	PRK06012, flhA, flagellar type III secretion system protein FlhA	NA|377aa|down_7|NZ_CP016756.1_4275828_4276959_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|707aa|down_8|NZ_CP016756.1_4277146_4279267_-	cd01948, EAL, EAL domain	NA|264aa|down_9|NZ_CP016756.1_4279438_4280230_-	PRK05701, fliR, flagellar type III secretion system protein FliR
GCF_001700965.1_ASM170096v1	NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	21	4290246-4290386	20	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	Orphan	GCCAAAGGGAGGGAGCAGGAGCGTAGTGCCGAGCCATGCTCGGCA	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,RT,PD-DExK,WYL	NA,NA	NA|377aa|up_9|NZ_CP016756.1_4275828_4276959_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|707aa|up_8|NZ_CP016756.1_4277146_4279267_-	cd01948, EAL, EAL domain	NA|264aa|up_7|NZ_CP016756.1_4279438_4280230_-	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|90aa|up_6|NZ_CP016756.1_4280234_4280504_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|332aa|up_5|NZ_CP016756.1_4281105_4282101_+	TIGR04122, hypothetical_protein, putative exonuclease, DNA ligase-associated	NA|535aa|up_4|NZ_CP016756.1_4282100_4283705_+	PRK09247, PRK09247, ATP-dependent DNA ligase; Validated	NA|830aa|up_3|NZ_CP016756.1_4283701_4286191_+	TIGR04121, ATP-dependent_helicase, DEXH box helicase, DNA ligase-associated	NA|213aa|up_2|NZ_CP016756.1_4286183_4286822_+	TIGR04123, hypothetical_protein, metallophosphoesterase, DNA ligase-associated	NA|423aa|up_1|NZ_CP016756.1_4286846_4288115_-	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family	NA|606aa|up_0|NZ_CP016756.1_4288333_4290151_+	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown]	NA|386aa|down_0|NZ_CP016756.1_4290777_4291935_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|170aa|down_1|NZ_CP016756.1_4292067_4292577_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|233aa|down_2|NZ_CP016756.1_4292785_4293484_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|185aa|down_3|NZ_CP016756.1_4293630_4294185_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|216aa|down_4|NZ_CP016756.1_4294208_4294856_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|482aa|down_5|NZ_CP016756.1_4295151_4296597_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|492aa|down_6|NZ_CP016756.1_4296674_4298150_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|182aa|down_7|NZ_CP016756.1_4298337_4298883_+	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|414aa|down_8|NZ_CP016756.1_4299183_4300425_-	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|463aa|down_9|NZ_CP016756.1_4300627_4302016_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
