The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	4541729	1922714	1929651	4541729		uncultured_Caudovirales_phage(83.33%)	8	NA	NA
WP_172837781.1|1922714_1924175_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	66.9	7.3e-167
WP_054658164.1|1924460_1924880_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	63.7	2.5e-43
WP_057506595.1|1924876_1925617_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.9	1.3e-84
WP_054658162.1|1925657_1925972_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_057506594.1|1925998_1926490_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	40.3	1.6e-25
WP_054658160.1|1926510_1927569_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_054658158.1|1927572_1928556_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.1	1.7e-63
WP_062171532.1|1928580_1929651_+	NAD(P)-binding domain-containing protein	NA	A0A2H4J2Q2	uncultured_Caudovirales_phage	57.6	1.3e-91
>prophage 2
NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	4541729	3004979	3014899	4541729		Enterobacteria_phage(28.57%)	9	NA	NA
WP_062171800.1|3004979_3006083_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2P1ELT3	Moumouvirus	34.6	1.9e-26
WP_062169479.1|3006667_3007603_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_062169477.1|3007602_3008349_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_062169475.1|3008595_3009651_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.9	7.0e-87
WP_062169473.1|3009702_3010590_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	58.9	2.4e-96
WP_062169471.1|3010586_3011144_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	52.2	7.1e-46
WP_062169469.1|3011140_3012040_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.2	4.8e-28
WP_062169467.1|3012140_3013544_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.1	3.5e-49
WP_062169465.1|3013552_3014899_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	27.3	2.0e-30
>prophage 3
NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	4541729	3428784	3442662	4541729	integrase	Bradyrhizobium_phage(12.5%)	12	3428420:3428436	3451267:3451283
3428420:3428436	attL	GAACTGTCCGGCGGCGA	NA	NA	NA	NA
WP_062168922.1|3428784_3429513_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	40.4	1.4e-38
WP_062168919.1|3429563_3430268_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_049440251.1|3430768_3431062_+|integrase	tyrosine-type recombinase/integrase	integrase	A7X7X0	Dichelobacter_phage	56.5	8.3e-22
WP_065868136.1|3431178_3431784_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_049440247.1|3431806_3433333_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.4	1.3e-89
WP_082746592.1|3433364_3434483_+	virulence RhuM family protein	NA	Q9JMN3	Wolbachia_phage	44.1	8.9e-64
WP_062168915.1|3434472_3435702_+	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	24.0	1.3e-07
WP_062168913.1|3435698_3439010_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.5	2.4e-56
WP_065868137.1|3439012_3439762_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_062168911.1|3440084_3441041_+	DUF932 domain-containing protein	NA	A0A0H4INH5	Stenotrophomonas_phage	44.4	3.8e-63
WP_065868228.1|3441061_3441550_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_049440237.1|3441672_3442662_+	YqaJ viral recombinase family protein	NA	A6XMH8	Bacillus_virus	36.2	7.1e-49
3451267:3451283	attR	GAACTGTCCGGCGGCGA	NA	NA	NA	NA
>prophage 4
NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	4541729	4340147	4371168	4541729	transposase,plate	Leptospira_phage(33.33%)	21	NA	NA
WP_156455811.1|4340147_4341254_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	37.4	1.6e-41
WP_156455810.1|4341556_4342201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156775326.1|4342197_4346934_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
WP_062167677.1|4347588_4348923_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_062171562.1|4349143_4349755_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_172837793.1|4350034_4350625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057628618.1|4350657_4351158_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_062167676.1|4351161_4352652_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_057628616.1|4352798_4353296_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_057628615.1|4353416_4353908_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_062167675.1|4353907_4355743_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_062167674.1|4355706_4356792_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_062167672.1|4356858_4359609_+	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	30.2	7.0e-86
WP_062167671.1|4359630_4359981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062167670.1|4360106_4362833_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	25.6	2.0e-37
WP_156455809.1|4362829_4363801_+	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
WP_156455808.1|4363793_4367294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156455807.1|4367346_4368315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062167665.1|4368460_4369555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156455806.1|4370030_4370693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082746548.1|4370898_4371168_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016756	Stenotrophomonas nitritireducens strain 2001 chromosome, complete genome	4541729	4478046	4521646	4541729	tRNA,integrase,protease,transposase	Xanthomonas_phage(25.0%)	41	4500073:4500088	4512593:4512608
WP_062167540.1|4478046_4479168_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_062167538.1|4479164_4479629_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_062167536.1|4479631_4480108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167534.1|4480229_4480550_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	46.2	1.7e-12
WP_062167532.1|4480861_4483141_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.8	1.2e-171
WP_005409596.1|4483447_4483666_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_062167531.1|4483764_4484499_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_062167529.1|4484495_4485629_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_156455798.1|4485661_4486513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167524.1|4486545_4487514_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.9	6.9e-65
WP_062167522.1|4487802_4490169_+	DNA translocase FtsK	NA	G1D482	Mycobacterium_virus	45.9	3.0e-85
WP_062167520.1|4490262_4490901_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_082746541.1|4491027_4492323_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	36.5	5.4e-73
WP_062167517.1|4492360_4492747_+	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	54.2	9.6e-26
WP_062167515.1|4492836_4493877_+	glucokinase	NA	NA	NA	NA	NA
WP_062167513.1|4493908_4494916_+	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	NA	NA	NA	NA	NA
WP_062167511.1|4494912_4495650_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_156455797.1|4496804_4497209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062167507.1|4497210_4498374_-	zonular occludens toxin	NA	A0A077JGB2	Xanthomonas_phage	62.0	6.5e-126
WP_062167505.1|4498370_4498685_-	DUF2523 domain-containing protein	NA	A0A077JCZ2	Xanthomonas_phage	57.6	1.7e-25
WP_065868184.1|4498686_4500192_-	hypothetical protein	NA	A0A077JDC5	Xanthomonas_phage	44.1	6.8e-67
4500073:4500088	attL	CGCTTCGCCCTGATCG	NA	NA	NA	NA
WP_062167501.1|4500304_4500562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167499.1|4500765_4501056_-	single-stranded DNA-binding protein	NA	B1NI78	Stenotrophomonas_phage	60.7	2.2e-22
WP_062167497.1|4501069_4502098_-	replication initiation factor domain-containing protein	NA	S0F3I3	Stenotrophomonas_phage	43.7	1.8e-63
WP_172837765.1|4502162_4502474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156455795.1|4502560_4502758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156455794.1|4502979_4503117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167492.1|4503250_4503622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062167490.1|4504383_4505274_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_062167488.1|4505378_4506467_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_082746538.1|4506710_4508051_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_084743388.1|4508436_4510191_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_082746537.1|4510411_4511299_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	54.4	1.5e-77
WP_062167484.1|4511365_4511734_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_062167482.1|4511734_4513015_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
4512593:4512608	attR	CGCTTCGCCCTGATCG	NA	NA	NA	NA
WP_065868187.1|4513100_4513727_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_016448223.1|4514428_4515358_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_062171537.1|4515672_4517145_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_136007218.1|4517397_4517670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062167478.1|4519057_4519780_+	VIT family protein	NA	NA	NA	NA	NA
WP_062167476.1|4520104_4521646_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
