assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	1	712588-712701	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	GCTATCGCTCCTCGCACCTCAGGGAGCAGAGGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA,NA	NA|551aa|up_9|NZ_CP016594.1_701164_702817_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|306aa|up_8|NZ_CP016594.1_702838_703756_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|116aa|up_7|NZ_CP016594.1_704157_704505_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|553aa|up_6|NZ_CP016594.1_704518_706177_-	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase	NA|447aa|up_5|NZ_CP016594.1_706333_707674_+	PRK07912, PRK07912, salicylate synthase	NA|83aa|up_4|NZ_CP016594.1_707719_707968_+	PRK05883, PRK05883, acyl carrier protein; Validated	NA|394aa|up_3|NZ_CP016594.1_707982_709164_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|436aa|up_2|NZ_CP016594.1_709204_710512_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|283aa|up_1|NZ_CP016594.1_710619_711468_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|325aa|up_0|NZ_CP016594.1_711532_712507_+	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|440aa|down_0|NZ_CP016594.1_712821_714141_-	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|515aa|down_1|NZ_CP016594.1_714137_715682_-	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|501aa|down_2|NZ_CP016594.1_715732_717235_-	cd19539, SgcC5_NRPS-like, SgcC5 is a non-ribosomal peptide synthetase (NRPS) condensation enzyme with ester- and amide- bond forming activity and similar C-domains of modular NRPSs	NA|780aa|down_3|NZ_CP016594.1_717222_719562_-	pfam01804, Penicil_amidase, Penicillin amidase	NA|605aa|down_4|NZ_CP016594.1_719567_721382_-	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|203aa|down_5|NZ_CP016594.1_721386_721995_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|1229aa|down_6|NZ_CP016594.1_722053_725740_-	cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes	NA|550aa|down_7|NZ_CP016594.1_726116_727766_+	PRK05851, PRK05851, long-chain-fatty acid--ACP ligase MbtM	NA|249aa|down_8|NZ_CP016594.1_727870_728617_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|263aa|down_9|NZ_CP016594.1_728824_729613_-	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	2	1200229-1200323	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	CCGAGACCCCGGCCCGGCCCGAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA|287aa|up_1|NZ_CP016594.1_1198087_1198948_-,NA|34aa|down_4|NZ_CP016594.1_1205226_1205328_+	NA|319aa|up_9|NZ_CP016594.1_1188269_1189226_-	cd01020, TroA_b, Metal binding protein TroA_b	NA|450aa|up_8|NZ_CP016594.1_1189353_1190703_+	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|205aa|up_7|NZ_CP016594.1_1190724_1191339_+	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|536aa|up_6|NZ_CP016594.1_1191420_1193028_+	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	NA|483aa|up_5|NZ_CP016594.1_1193094_1194543_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|249aa|up_4|NZ_CP016594.1_1194694_1195441_+	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|107aa|up_3|NZ_CP016594.1_1195522_1195843_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|229aa|up_2|NZ_CP016594.1_1197373_1198060_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|287aa|up_1|NZ_CP016594.1_1198087_1198948_-	NA	NA|319aa|up_0|NZ_CP016594.1_1199024_1199981_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|298aa|down_0|NZ_CP016594.1_1201822_1202716_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|286aa|down_1|NZ_CP016594.1_1202754_1203612_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|287aa|down_2|NZ_CP016594.1_1203618_1204479_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|78aa|down_3|NZ_CP016594.1_1204667_1204901_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|34aa|down_4|NZ_CP016594.1_1205226_1205328_+	NA	NA|351aa|down_5|NZ_CP016594.1_1205425_1206478_+	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|316aa|down_6|NZ_CP016594.1_1206889_1207837_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|388aa|down_7|NZ_CP016594.1_1207876_1209040_+	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family	NA|555aa|down_8|NZ_CP016594.1_1209377_1211042_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|789aa|down_9|NZ_CP016594.1_1211063_1213430_-	COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	3	1693068-1693161	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	CGCTTGCGCTCCTCGCACCTCAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA|71aa|up_9|NZ_CP016594.1_1684312_1684525_-,NA|142aa|up_7|NZ_CP016594.1_1685919_1686345_+,NA|148aa|up_6|NZ_CP016594.1_1686418_1686862_+,NA|161aa|down_2|NZ_CP016594.1_1695163_1695646_-,NA|534aa|down_5|NZ_CP016594.1_1698842_1700444_+,NA|150aa|down_6|NZ_CP016594.1_1700445_1700895_+	NA|71aa|up_9|NZ_CP016594.1_1684312_1684525_-	NA	NA|139aa|up_8|NZ_CP016594.1_1685219_1685636_+	pfam09394, Inhibitor_I42, Chagasin family peptidase inhibitor I42	NA|142aa|up_7|NZ_CP016594.1_1685919_1686345_+	NA	NA|148aa|up_6|NZ_CP016594.1_1686418_1686862_+	NA	NA|315aa|up_5|NZ_CP016594.1_1686971_1687916_+	pfam01674, Lipase_2, Lipase (class 2)	NA|429aa|up_4|NZ_CP016594.1_1687975_1689262_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|108aa|up_3|NZ_CP016594.1_1689277_1689601_-	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|261aa|up_2|NZ_CP016594.1_1689597_1690380_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|187aa|up_1|NZ_CP016594.1_1690437_1690998_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|538aa|up_0|NZ_CP016594.1_1691281_1692895_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|276aa|down_0|NZ_CP016594.1_1693259_1694087_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|321aa|down_1|NZ_CP016594.1_1694204_1695167_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|161aa|down_2|NZ_CP016594.1_1695163_1695646_-	NA	NA|534aa|down_3|NZ_CP016594.1_1695652_1697254_-	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|345aa|down_4|NZ_CP016594.1_1697285_1698320_-	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF	NA|534aa|down_5|NZ_CP016594.1_1698842_1700444_+	NA	NA|150aa|down_6|NZ_CP016594.1_1700445_1700895_+	NA	NA|494aa|down_7|NZ_CP016594.1_1700891_1702373_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|708aa|down_8|NZ_CP016594.1_1702386_1704510_+	PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	NA|271aa|down_9|NZ_CP016594.1_1704511_1705324_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	4	2614481-2614583	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	CTGAGGTGTGAGGGGCGCAAGCGAC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA,NA|226aa|down_4|NZ_CP016594.1_2618630_2619308_+	NA|207aa|up_9|NZ_CP016594.1_2602016_2602637_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|252aa|up_8|NZ_CP016594.1_2602792_2603548_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|190aa|up_7|NZ_CP016594.1_2603652_2604222_+	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|198aa|up_6|NZ_CP016594.1_2604218_2604812_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|363aa|up_5|NZ_CP016594.1_2604812_2605901_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|128aa|up_4|NZ_CP016594.1_2606050_2606434_+	pfam02699, YajC, Preprotein translocase subunit	NA|572aa|up_3|NZ_CP016594.1_2606596_2608312_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|399aa|up_2|NZ_CP016594.1_2608308_2609505_+	PRK13022, secF, protein translocase subunit SecF	NA|574aa|up_1|NZ_CP016594.1_2609515_2611237_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|192aa|up_0|NZ_CP016594.1_2611253_2611829_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|307aa|down_0|NZ_CP016594.1_2614696_2615617_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|247aa|down_1|NZ_CP016594.1_2615827_2616568_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|422aa|down_2|NZ_CP016594.1_2616564_2617830_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|224aa|down_3|NZ_CP016594.1_2617845_2618517_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|226aa|down_4|NZ_CP016594.1_2618630_2619308_+	NA	NA|272aa|down_5|NZ_CP016594.1_2619304_2620120_+	PRK07825, PRK07825, short chain dehydrogenase; Provisional	NA|558aa|down_6|NZ_CP016594.1_2620136_2621810_-	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|286aa|down_7|NZ_CP016594.1_2621820_2622678_-	COG2321, COG2321, Predicted metalloprotease [General function prediction only]	NA|607aa|down_8|NZ_CP016594.1_2622818_2624639_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|1162aa|down_9|NZ_CP016594.1_2624737_2628223_+	pfam09899, DUF2126, Putative amidoligase enzyme (DUF2126)
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	5	2822111-2822210	5	CRISPRCasFinder	no	RT	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Unclear	GCGCAGCGAGCGGGGCGACTGGCT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA,NA|94aa|down_0|NZ_CP016594.1_2822337_2822619_+,NA|74aa|down_2|NZ_CP016594.1_2823985_2824207_+,NA|108aa|down_3|NZ_CP016594.1_2824303_2824627_+	NA|260aa|up_9|NZ_CP016594.1_2808574_2809354_+	PRK08057, PRK08057, cobalt-precorrin-6x reductase; Reviewed	NA|533aa|up_8|NZ_CP016594.1_2809306_2810905_-	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH)	NA|208aa|up_7|NZ_CP016594.1_2810916_2811540_-	PRK08285, cobH, precorrin-8X methylmutase; Reviewed	NA|387aa|up_6|NZ_CP016594.1_2811553_2812714_-	TIGR02435, Precorrin-3B_synthase, precorrin-3B synthase	NA|1244aa|up_5|NZ_CP016594.1_2812925_2816657_+	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed	NA|170aa|up_4|NZ_CP016594.1_2816762_2817272_+	PRK11463, fxsA, phage T7 F exclusion suppressor FxsA; Reviewed	NA|545aa|up_3|NZ_CP016594.1_2817376_2819011_+	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|563aa|up_2|NZ_CP016594.1_2819007_2820696_+	COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]	NA|273aa|up_1|NZ_CP016594.1_2820679_2821498_+	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|115aa|up_0|NZ_CP016594.1_2821575_2821920_-	pfam13397, RbpA, RNA polymerase-binding protein	NA|94aa|down_0|NZ_CP016594.1_2822337_2822619_+	NA	NA|384aa|down_1|NZ_CP016594.1_2822615_2823767_+	PRK14013, PRK14013, hypothetical protein; Provisional	NA|74aa|down_2|NZ_CP016594.1_2823985_2824207_+	NA	NA|108aa|down_3|NZ_CP016594.1_2824303_2824627_+	NA	NA|242aa|down_4|NZ_CP016594.1_2824623_2825349_+	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|336aa|down_5|NZ_CP016594.1_2825465_2826473_+	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|392aa|down_6|NZ_CP016594.1_2826493_2827669_-	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|410aa|down_7|NZ_CP016594.1_2827781_2829011_+	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]	NA|557aa|down_8|NZ_CP016594.1_2829007_2830678_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|144aa|down_9|NZ_CP016594.1_2830703_2831135_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	6	2874347-2874498	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	CGCTCCCTGAGGTGCGAGCGGACGACCCTCTGCCCCCTGAGGTGCGAGCG	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA,NA|77aa|down_1|NZ_CP016594.1_2879789_2880020_-,NA|185aa|down_4|NZ_CP016594.1_2888830_2889385_-,NA|59aa|down_8|NZ_CP016594.1_2903588_2903765_+	NA|283aa|up_9|NZ_CP016594.1_2863272_2864121_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|477aa|up_8|NZ_CP016594.1_2864185_2865616_-	TIGR04050, MSMEG_0567_Cter, AIR synthase-related protein, MSMEG_0567 C-terminal family	NA|352aa|up_7|NZ_CP016594.1_2865617_2866673_-	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family	NA|424aa|up_6|NZ_CP016594.1_2867082_2868354_-	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family	NA|139aa|up_5|NZ_CP016594.1_2868350_2868767_-	TIGR04042, conserved_hypothetical_protein, MSMEG_0570 family protein	NA|304aa|up_4|NZ_CP016594.1_2868759_2869671_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|175aa|up_3|NZ_CP016594.1_2869726_2870251_-	TIGR04044, MSMEG_0572_fam, MSMEG_0572 family protein	NA|229aa|up_2|NZ_CP016594.1_2870800_2871487_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|372aa|up_1|NZ_CP016594.1_2871558_2872674_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|505aa|up_0|NZ_CP016594.1_2872798_2874313_+	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|1115aa|down_0|NZ_CP016594.1_2875286_2878631_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|77aa|down_1|NZ_CP016594.1_2879789_2880020_-	NA	NA|747aa|down_2|NZ_CP016594.1_2880059_2882300_-	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases	NA|2125aa|down_3|NZ_CP016594.1_2882300_2888675_-	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	NA|185aa|down_4|NZ_CP016594.1_2888830_2889385_-	NA	NA|2124aa|down_5|NZ_CP016594.1_2889428_2895800_-	pfam13401, AAA_22, AAA domain	NA|1526aa|down_6|NZ_CP016594.1_2895934_2900512_-	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX	NA|948aa|down_7|NZ_CP016594.1_2900515_2903359_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|59aa|down_8|NZ_CP016594.1_2903588_2903765_+	NA	NA|164aa|down_9|NZ_CP016594.1_2904238_2904730_+	pfam13577, SnoaL_4, SnoaL-like domain
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	7	3334015-3334122	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	CGTCGCTAACGCTCCTCGCACCTCAG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA|143aa|up_9|NZ_CP016594.1_3324978_3325407_-,NA|275aa|up_5|NZ_CP016594.1_3329299_3330124_-,NA|98aa|up_4|NZ_CP016594.1_3330120_3330414_-,NA	NA|143aa|up_9|NZ_CP016594.1_3324978_3325407_-	NA	NA|263aa|up_8|NZ_CP016594.1_3325733_3326522_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|250aa|up_7|NZ_CP016594.1_3326546_3327296_-	PRK12386, PRK12386, fumarate reductase iron-sulfur subunit; Provisional	NA|648aa|up_6|NZ_CP016594.1_3327297_3329241_-	PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|275aa|up_5|NZ_CP016594.1_3329299_3330124_-	NA	NA|98aa|up_4|NZ_CP016594.1_3330120_3330414_-	NA	NA|225aa|up_3|NZ_CP016594.1_3330523_3331198_+	pfam07077, DUF1345, Protein of unknown function (DUF1345)	NA|254aa|up_2|NZ_CP016594.1_3331280_3332042_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|260aa|up_1|NZ_CP016594.1_3332200_3332980_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|324aa|up_0|NZ_CP016594.1_3332990_3333962_-	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|336aa|down_0|NZ_CP016594.1_3334185_3335193_-	cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|453aa|down_1|NZ_CP016594.1_3335197_3336556_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|240aa|down_2|NZ_CP016594.1_3336575_3337295_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|329aa|down_3|NZ_CP016594.1_3337326_3338313_-	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|340aa|down_4|NZ_CP016594.1_3338401_3339421_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|333aa|down_5|NZ_CP016594.1_3339417_3340416_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|down_6|NZ_CP016594.1_3340447_3341374_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|524aa|down_7|NZ_CP016594.1_3341391_3342963_-	cd08491, PBP2_NikA_DppA_OppA_like_12, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|347aa|down_8|NZ_CP016594.1_3343334_3344375_+	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase	NA|132aa|down_9|NZ_CP016594.1_3344374_3344770_+	cd00293, USP_Like, Usp: Universal stress protein family
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	8	3878991-3879090	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Type I-A	CGACGGGCGCCGGGAGCGGAGCGA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA|299aa|up_3|NZ_CP016594.1_3875159_3876056_+,NA	NA|190aa|up_9|NZ_CP016594.1_3869596_3870166_-	PRK05634, PRK05634, nucleosidase; Provisional	NA|266aa|up_8|NZ_CP016594.1_3870201_3870999_-	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|308aa|up_7|NZ_CP016594.1_3870995_3871919_-	PRK07832, PRK07832, SDR family oxidoreductase	NA|341aa|up_6|NZ_CP016594.1_3872007_3873030_-	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase	NA|353aa|up_5|NZ_CP016594.1_3873242_3874301_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|287aa|up_4|NZ_CP016594.1_3874297_3875158_-	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|299aa|up_3|NZ_CP016594.1_3875159_3876056_+	NA	NA|115aa|up_2|NZ_CP016594.1_3876246_3876591_+	pfam11774, Lsr2, Lsr2	NA|349aa|up_1|NZ_CP016594.1_3876681_3877728_+	PRK07945, PRK07945, PHP domain-containing protein	NA|431aa|up_0|NZ_CP016594.1_3877681_3878974_-	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	NA|365aa|down_0|NZ_CP016594.1_3879129_3880224_-	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent	NA|358aa|down_1|NZ_CP016594.1_3880256_3881330_-	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|263aa|down_2|NZ_CP016594.1_3881362_3882151_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|284aa|down_3|NZ_CP016594.1_3882191_3883043_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|200aa|down_4|NZ_CP016594.1_3883158_3883758_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|412aa|down_5|NZ_CP016594.1_3883825_3885061_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|298aa|down_6|NZ_CP016594.1_3885159_3886053_+	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|162aa|down_7|NZ_CP016594.1_3886056_3886542_-	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	csa3|124aa|down_8|NZ_CP016594.1_3886545_3886917_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|457aa|down_9|NZ_CP016594.1_3887086_3888457_+	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	9	3958567-3958692	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	GTTTGTGGCGTGGCGCCACAC	21	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA|209aa|up_5|NZ_CP016594.1_3953398_3954025_-,NA|182aa|up_4|NZ_CP016594.1_3954101_3954647_+,NA|86aa|up_2|NZ_CP016594.1_3956774_3957032_-,NA|94aa|up_1|NZ_CP016594.1_3957028_3957310_-,NA|161aa|up_0|NZ_CP016594.1_3957958_3958441_-,NA|183aa|down_2|NZ_CP016594.1_3960424_3960973_+	NA|377aa|up_9|NZ_CP016594.1_3948716_3949847_-	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|249aa|up_8|NZ_CP016594.1_3949843_3950590_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|393aa|up_7|NZ_CP016594.1_3950589_3951768_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|179aa|up_6|NZ_CP016594.1_3952246_3952783_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|209aa|up_5|NZ_CP016594.1_3953398_3954025_-	NA	NA|182aa|up_4|NZ_CP016594.1_3954101_3954647_+	NA	NA|633aa|up_3|NZ_CP016594.1_3954714_3956613_-	TIGR01543, Putative_prohead_protease, phage prohead protease, HK97 family	NA|86aa|up_2|NZ_CP016594.1_3956774_3957032_-	NA	NA|94aa|up_1|NZ_CP016594.1_3957028_3957310_-	NA	NA|161aa|up_0|NZ_CP016594.1_3957958_3958441_-	NA	NA|396aa|down_0|NZ_CP016594.1_3958694_3959882_-	pfam13481, AAA_25, AAA domain	NA|71aa|down_1|NZ_CP016594.1_3960157_3960370_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|183aa|down_2|NZ_CP016594.1_3960424_3960973_+	NA	NA|412aa|down_3|NZ_CP016594.1_3960969_3962205_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|251aa|down_4|NZ_CP016594.1_3962486_3963239_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|548aa|down_5|NZ_CP016594.1_3963321_3964965_-	PRK07564, PRK07564, phosphoglucomutase; Validated	NA|212aa|down_6|NZ_CP016594.1_3965086_3965722_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|595aa|down_7|NZ_CP016594.1_3965726_3967511_-	PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated	NA|411aa|down_8|NZ_CP016594.1_3967707_3968940_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|280aa|down_9|NZ_CP016594.1_3968960_3969800_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	10	4908233-4908363	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	CTCAGGGAGCAGAGGGTGGGCCTTCGCTCG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA,NA|83aa|down_9|NZ_CP016594.1_4917772_4918021_-	NA|354aa|up_9|NZ_CP016594.1_4897687_4898749_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|291aa|up_8|NZ_CP016594.1_4898852_4899725_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|275aa|up_7|NZ_CP016594.1_4899738_4900563_-	cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs	NA|164aa|up_6|NZ_CP016594.1_4900604_4901096_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|494aa|up_5|NZ_CP016594.1_4901189_4902671_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|249aa|up_4|NZ_CP016594.1_4902807_4903554_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|384aa|up_3|NZ_CP016594.1_4903590_4904742_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|278aa|up_2|NZ_CP016594.1_4904895_4905729_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|342aa|up_1|NZ_CP016594.1_4905725_4906751_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|380aa|up_0|NZ_CP016594.1_4906796_4907936_+	TIGR04253, mesacon_CoA_iso, mesaconyl-CoA isomerase	NA|318aa|down_0|NZ_CP016594.1_4908384_4909338_-	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase	NA|263aa|down_1|NZ_CP016594.1_4909566_4910355_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|457aa|down_2|NZ_CP016594.1_4910351_4911722_-	TIGR03467, HpnE, squalene-associated FAD-dependent desaturase	NA|396aa|down_3|NZ_CP016594.1_4911799_4912987_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|225aa|down_4|NZ_CP016594.1_4912983_4913658_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|217aa|down_5|NZ_CP016594.1_4913721_4914372_-	pfam13462, Thioredoxin_4, Thioredoxin	NA|330aa|down_6|NZ_CP016594.1_4914494_4915484_+	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|429aa|down_7|NZ_CP016594.1_4915554_4916841_+	pfam03583, LIP, Secretory lipase	NA|287aa|down_8|NZ_CP016594.1_4916849_4917710_-	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|83aa|down_9|NZ_CP016594.1_4917772_4918021_-	NA
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	11	5022164-5022295	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	CCACCCCCGCTGGTTGAGCAGGCGACGAGCGCAGCGAGGAGCCGTGTCGA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA|369aa|up_7|NZ_CP016594.1_5014867_5015974_+,NA|61aa|down_4|NZ_CP016594.1_5028266_5028449_-,NA|189aa|down_7|NZ_CP016594.1_5030576_5031143_-	NA|615aa|up_9|NZ_CP016594.1_5011517_5013362_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|383aa|up_8|NZ_CP016594.1_5013722_5014871_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|369aa|up_7|NZ_CP016594.1_5014867_5015974_+	NA	NA|416aa|up_6|NZ_CP016594.1_5015970_5017218_+	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|263aa|up_5|NZ_CP016594.1_5017231_5018020_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|418aa|up_4|NZ_CP016594.1_5018016_5019270_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|245aa|up_3|NZ_CP016594.1_5019176_5019911_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|345aa|up_2|NZ_CP016594.1_5019886_5020921_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|176aa|up_1|NZ_CP016594.1_5020926_5021454_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|202aa|up_0|NZ_CP016594.1_5021555_5022161_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|273aa|down_0|NZ_CP016594.1_5022387_5023206_+	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|594aa|down_1|NZ_CP016594.1_5023307_5025089_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|785aa|down_2|NZ_CP016594.1_5025159_5027514_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|209aa|down_3|NZ_CP016594.1_5027578_5028205_-	cd07251, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|61aa|down_4|NZ_CP016594.1_5028266_5028449_-	NA	NA|140aa|down_5|NZ_CP016594.1_5028645_5029065_+	COG4270, COG4270, Predicted membrane protein [Function unknown]	NA|491aa|down_6|NZ_CP016594.1_5029061_5030534_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|189aa|down_7|NZ_CP016594.1_5030576_5031143_-	NA	NA|198aa|down_8|NZ_CP016594.1_5031200_5031794_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|302aa|down_9|NZ_CP016594.1_5031890_5032796_+	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]
GCF_001698225.1_ASM169822v1	NZ_CP016594	Gordonia terrae strain 3612 chromosome, complete genome	12	5595785-5595848	11	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL,RT	Orphan	CGCTCCTCGCACCTCAGGGAGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL,RT	NA|238aa|up_3|NZ_CP016594.1_5591785_5592499_+,NA|190aa|down_8|NZ_CP016594.1_5605224_5605794_-	NA|165aa|up_9|NZ_CP016594.1_5585102_5585597_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|364aa|up_8|NZ_CP016594.1_5585740_5586832_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|330aa|up_7|NZ_CP016594.1_5586828_5587818_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|454aa|up_6|NZ_CP016594.1_5587834_5589196_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|461aa|up_5|NZ_CP016594.1_5589227_5590610_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|379aa|up_4|NZ_CP016594.1_5590602_5591739_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|238aa|up_3|NZ_CP016594.1_5591785_5592499_+	NA	NA|231aa|up_2|NZ_CP016594.1_5592508_5593201_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|397aa|up_1|NZ_CP016594.1_5593205_5594396_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|444aa|up_0|NZ_CP016594.1_5594392_5595724_-	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain	NA|253aa|down_0|NZ_CP016594.1_5595926_5596685_-	COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport and metabolism]	NA|299aa|down_1|NZ_CP016594.1_5596672_5597569_-	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	NA|452aa|down_2|NZ_CP016594.1_5597635_5598991_-	TIGR03105, gln_synth_III, glutamine synthetase, type III	NA|457aa|down_3|NZ_CP016594.1_5599223_5600594_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|347aa|down_4|NZ_CP016594.1_5600650_5601691_-	pfam11927, DUF3445, Protein of unknown function (DUF3445)	NA|334aa|down_5|NZ_CP016594.1_5601693_5602695_-	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|513aa|down_6|NZ_CP016594.1_5602691_5604230_-	pfam11927, DUF3445, Protein of unknown function (DUF3445)	NA|334aa|down_7|NZ_CP016594.1_5604226_5605228_-	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|190aa|down_8|NZ_CP016594.1_5605224_5605794_-	NA	NA|128aa|down_9|NZ_CP016594.1_5605803_5606187_-	cd02228, cupin_EutQ, Clostridium difficile EutQ and related proteins, cupin domain
