assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001698185.1_ASM169818v1	NZ_CP016440	Bordetella pseudohinzii strain HI4681 chromosome, complete genome	1	237183-237260	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,PD-DExK,cas9,cas1,cas2	Orphan	GCCCACGGTGGCCTGGCGGCCGAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,PD-DExK,cas9,cas1,cas2	NA,NA	NA|295aa|up_9|NZ_CP016440.1_226153_227038_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|80aa|up_8|NZ_CP016440.1_227238_227478_+	pfam01206, TusA, Sulfurtransferase TusA	NA|121aa|up_7|NZ_CP016440.1_227519_227882_+	COG2044, COG2044, Predicted peroxiredoxins [General function prediction only]	NA|499aa|up_6|NZ_CP016440.1_229992_231489_+	cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like	NA|88aa|up_5|NZ_CP016440.1_231544_231808_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|155aa|up_4|NZ_CP016440.1_231814_232279_+	pfam02639, DUF188, Uncharacterized BCR, YaiI/YqxD family COG1671	NA|216aa|up_3|NZ_CP016440.1_232240_232888_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|299aa|up_2|NZ_CP016440.1_232937_233834_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|465aa|up_1|NZ_CP016440.1_233847_235242_-	PRK08204, PRK08204, hypothetical protein; Provisional	NA|316aa|up_0|NZ_CP016440.1_235244_236192_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|222aa|down_0|NZ_CP016440.1_237985_238651_+	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]	NA|147aa|down_1|NZ_CP016440.1_238629_239070_+	pfam16068, DUF4810, Domain of unknown function (DUF4810)	NA|219aa|down_2|NZ_CP016440.1_239075_239732_+	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799)	NA|287aa|down_3|NZ_CP016440.1_239806_240667_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|414aa|down_4|NZ_CP016440.1_240671_241913_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|324aa|down_5|NZ_CP016440.1_242038_243010_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|321aa|down_6|NZ_CP016440.1_243046_244009_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|107aa|down_7|NZ_CP016440.1_244063_244384_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|452aa|down_8|NZ_CP016440.1_244395_245751_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|372aa|down_9|NZ_CP016440.1_245956_247072_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_001698185.1_ASM169818v1	NZ_CP016440	Bordetella pseudohinzii strain HI4681 chromosome, complete genome	2	3641563-3642916	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2	DEDDh,DinG,csa3,PD-DExK,cas9,cas1,cas2	Type II-A, or Type II-C?,Type II-C, Type II-B,Type II-B	ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC,ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC,ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	19,20,20	20	TypeII-A,orTypeII-C?,TypeII-B,TypeII-C,TypeII-B	DEDDh,DinG,csa3,PD-DExK,cas9,cas1,cas2	NA,NA	NA|335aa|up_9|NZ_CP016440.1_3629690_3630695_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|300aa|up_8|NZ_CP016440.1_3630804_3631704_+	PRK02155, ppnK, NAD kinase	NA|552aa|up_7|NZ_CP016440.1_3631721_3633377_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|140aa|up_6|NZ_CP016440.1_3633443_3633863_-	pfam01475, FUR, Ferric uptake regulator family	NA|186aa|up_5|NZ_CP016440.1_3634083_3634641_+	pfam04355, SmpA_OmlA, SmpA / OmlA family	NA|264aa|up_4|NZ_CP016440.1_3634657_3635449_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|329aa|up_3|NZ_CP016440.1_3635509_3636496_-	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase	cas9|1039aa|up_2|NZ_CP016440.1_3637104_3640221_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|310aa|up_1|NZ_CP016440.1_3640227_3641157_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_0|NZ_CP016440.1_3641186_3641492_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|275aa|down_0|NZ_CP016440.1_3643081_3643906_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|258aa|down_1|NZ_CP016440.1_3643910_3644684_+	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional	NA|314aa|down_2|NZ_CP016440.1_3644979_3645921_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|236aa|down_3|NZ_CP016440.1_3646010_3646718_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|872aa|down_4|NZ_CP016440.1_3646714_3649330_+	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent	NA|395aa|down_5|NZ_CP016440.1_3649384_3650569_+	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|203aa|down_6|NZ_CP016440.1_3650651_3651260_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|342aa|down_7|NZ_CP016440.1_3651382_3652408_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|251aa|down_8|NZ_CP016440.1_3652471_3653224_-	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase	NA|236aa|down_9|NZ_CP016440.1_3653220_3653928_-	cd05233, SDR_c, classical (c) SDRs
