assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001698125.1_ASM169812v1	NZ_CP013854	Pseudonocardia sp. HH130630-07, complete genome	1	316352-316451	1	CRISPRCasFinder	no		csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT	Orphan	GGCTGAAGCTCCATGAGTGGAACCG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT,PrimPol	NA,NA|56aa|down_4|NZ_CP013854.1_321948_322116_+,NA|275aa|down_5|NZ_CP013854.1_322117_322942_+	NA|158aa|up_9|NZ_CP013854.1_306623_307097_-	pfam06271, RDD, RDD family	NA|474aa|up_8|NZ_CP013854.1_307281_308703_+	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|95aa|up_7|NZ_CP013854.1_308870_309155_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|62aa|up_6|NZ_CP013854.1_309339_309525_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|145aa|up_5|NZ_CP013854.1_310160_310595_-	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]	NA|141aa|up_4|NZ_CP013854.1_310629_311052_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|238aa|up_3|NZ_CP013854.1_311077_311791_-	pfam13398, Peptidase_M50B, Peptidase M50B-like	NA|319aa|up_2|NZ_CP013854.1_311914_312871_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|1012aa|up_1|NZ_CP013854.1_312849_315885_-	PRK14109, PRK14109, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA|68aa|up_0|NZ_CP013854.1_316093_316297_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|448aa|down_0|NZ_CP013854.1_316493_317837_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|507aa|down_1|NZ_CP013854.1_317921_319442_-	pfam08386, Abhydrolase_4, TAP-like protein	NA|285aa|down_2|NZ_CP013854.1_319746_320601_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|379aa|down_3|NZ_CP013854.1_320620_321757_-	PRK13515, PRK13515, carboxylate-amine ligase; Provisional	NA|56aa|down_4|NZ_CP013854.1_321948_322116_+	NA	NA|275aa|down_5|NZ_CP013854.1_322117_322942_+	NA	NA|226aa|down_6|NZ_CP013854.1_323062_323740_-	PRK09583, PRK09583, mycothiol-dependent maleylpyruvate isomerase; Reviewed	NA|280aa|down_7|NZ_CP013854.1_323826_324666_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|793aa|down_8|NZ_CP013854.1_324809_327188_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|550aa|down_9|NZ_CP013854.1_327333_328983_+	PRK15389, PRK15389, fumarate hydratase; Provisional
GCF_001698125.1_ASM169812v1	NZ_CP013854	Pseudonocardia sp. HH130630-07, complete genome	2	1333943-1334214	1,2	PILER-CR,CRISPRCasFinder	no		csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT	Orphan	GCGGTCCCCGCACACGCGGGGGTGGTCCC,GCGGTCCCCGCACACGCGGGGGTGGTCCC	29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B	4,4	4	Orphan	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT,PrimPol	NA|55aa|up_0|NZ_CP013854.1_1333421_1333586_-,NA|291aa|down_0|NZ_CP013854.1_1334633_1335506_-,NA|52aa|down_1|NZ_CP013854.1_1335768_1335924_-	NA|370aa|up_9|NZ_CP013854.1_1319790_1320900_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|692aa|up_8|NZ_CP013854.1_1321040_1323116_-	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|538aa|up_7|NZ_CP013854.1_1323390_1325004_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|up_6|NZ_CP013854.1_1325117_1326044_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|318aa|up_5|NZ_CP013854.1_1326036_1326990_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|344aa|up_4|NZ_CP013854.1_1326989_1328021_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|354aa|up_3|NZ_CP013854.1_1328017_1329079_+	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|624aa|up_2|NZ_CP013854.1_1329134_1331006_-	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|636aa|up_1|NZ_CP013854.1_1331060_1332968_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|55aa|up_0|NZ_CP013854.1_1333421_1333586_-	NA	NA|291aa|down_0|NZ_CP013854.1_1334633_1335506_-	NA	NA|52aa|down_1|NZ_CP013854.1_1335768_1335924_-	NA	NA|186aa|down_2|NZ_CP013854.1_1336123_1336681_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|102aa|down_3|NZ_CP013854.1_1336687_1336993_-	pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase	NA|276aa|down_4|NZ_CP013854.1_1337053_1337881_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|293aa|down_5|NZ_CP013854.1_1337865_1338744_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|156aa|down_6|NZ_CP013854.1_1339285_1339753_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|433aa|down_7|NZ_CP013854.1_1339753_1341051_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|269aa|down_8|NZ_CP013854.1_1341549_1342356_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|349aa|down_9|NZ_CP013854.1_1342609_1343656_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
GCF_001698125.1_ASM169812v1	NZ_CP013854	Pseudonocardia sp. HH130630-07, complete genome	3	2005583-2005681	3	CRISPRCasFinder	no		csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT	Orphan	GCACTCATGGAGCTTCAGCCTCGT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT,PrimPol	NA,NA	NA|157aa|up_9|NZ_CP013854.1_1994576_1995047_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|172aa|up_8|NZ_CP013854.1_1995047_1995563_-	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein	NA|411aa|up_7|NZ_CP013854.1_1995673_1996906_+	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|453aa|up_6|NZ_CP013854.1_1997458_1998817_+	cd17366, MFS_ProP, Proline/betaine transporter of the Major Facilitator Superfamily of transporters	NA|434aa|up_5|NZ_CP013854.1_1998856_2000158_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|311aa|up_4|NZ_CP013854.1_2000247_2001180_+	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|200aa|up_3|NZ_CP013854.1_2001193_2001793_-	pfam06475, Glycolipid_bind, Putative glycolipid-binding	NA|311aa|up_2|NZ_CP013854.1_2001877_2002810_-	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|353aa|up_1|NZ_CP013854.1_2002893_2003952_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|345aa|up_0|NZ_CP013854.1_2004130_2005165_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|417aa|down_0|NZ_CP013854.1_2005839_2007090_+	TIGR02032, Uncharacterized_protein_MJ1520, geranylgeranyl reductase family	NA|290aa|down_1|NZ_CP013854.1_2007159_2008029_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|511aa|down_2|NZ_CP013854.1_2008205_2009738_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|689aa|down_3|NZ_CP013854.1_2009825_2011892_+	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|297aa|down_4|NZ_CP013854.1_2011888_2012779_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|425aa|down_5|NZ_CP013854.1_2012812_2014087_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|429aa|down_6|NZ_CP013854.1_2014097_2015384_+	pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus	NA|252aa|down_7|NZ_CP013854.1_2015576_2016332_+	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms	NA|759aa|down_8|NZ_CP013854.1_2016306_2018583_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|230aa|down_9|NZ_CP013854.1_2018780_2019470_+	pfam13462, Thioredoxin_4, Thioredoxin
GCF_001698125.1_ASM169812v1	NZ_CP013854	Pseudonocardia sp. HH130630-07, complete genome	4	2724048-2724251	4	CRISPRCasFinder	no		csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT	Orphan	CCGACGGGCCGGTCGCCGTATCCG	24	0	0	NA	NA	NA	3	3	Orphan	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT,PrimPol	NA|51aa|up_8|NZ_CP013854.1_2715975_2716128_+,NA|195aa|up_0|NZ_CP013854.1_2722887_2723472_-,NA|290aa|down_1|NZ_CP013854.1_2727435_2728305_-,NA|64aa|down_3|NZ_CP013854.1_2729223_2729415_-	NA|207aa|up_9|NZ_CP013854.1_2715161_2715782_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|51aa|up_8|NZ_CP013854.1_2715975_2716128_+	NA	NA|465aa|up_7|NZ_CP013854.1_2716147_2717542_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|338aa|up_6|NZ_CP013854.1_2717716_2718730_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|243aa|up_5|NZ_CP013854.1_2718729_2719458_+	pfam01883, FeS_assembly_P, Iron-sulfur cluster assembly protein	NA|342aa|up_4|NZ_CP013854.1_2719454_2720480_+	cd05284, arabinose_DH_like, D-arabinose dehydrogenase	NA|167aa|up_3|NZ_CP013854.1_2720553_2721054_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|363aa|up_2|NZ_CP013854.1_2721137_2722226_+	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family	NA|169aa|up_1|NZ_CP013854.1_2722384_2722891_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|195aa|up_0|NZ_CP013854.1_2722887_2723472_-	NA	NA|605aa|down_0|NZ_CP013854.1_2725615_2727430_-	pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase	NA|290aa|down_1|NZ_CP013854.1_2727435_2728305_-	NA	NA|254aa|down_2|NZ_CP013854.1_2728412_2729174_+	PRK06123, PRK06123, SDR family oxidoreductase	NA|64aa|down_3|NZ_CP013854.1_2729223_2729415_-	NA	NA|196aa|down_4|NZ_CP013854.1_2729861_2730449_+	TIGR02406, L-24-diaminobutyric_acid_acetyltransferase, diaminobutyrate acetyltransferase	NA|418aa|down_5|NZ_CP013854.1_2730445_2731699_+	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate transaminase	NA|132aa|down_6|NZ_CP013854.1_2731706_2732102_+	PRK13290, ectC, L-ectoine synthase; Reviewed	NA|295aa|down_7|NZ_CP013854.1_2732273_2733158_+	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase	NA|225aa|down_8|NZ_CP013854.1_2733207_2733882_+	pfam11361, DUF3159, Protein of unknown function (DUF3159)	NA|370aa|down_9|NZ_CP013854.1_2734132_2735242_+	PHA03247, PHA03247, large tegument protein UL36; Provisional
GCF_001698125.1_ASM169812v1	NZ_CP013854	Pseudonocardia sp. HH130630-07, complete genome	5	2943069-2943171	5	CRISPRCasFinder	no	csa3	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT	Type I-A	ACCGGCGCCTACGACCCGTACGACG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT,PrimPol	NA,NA|34aa|down_4|NZ_CP013854.1_2946803_2946905_+	NA|299aa|up_9|NZ_CP013854.1_2932070_2932968_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|374aa|up_8|NZ_CP013854.1_2933036_2934158_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|255aa|up_7|NZ_CP013854.1_2934553_2935318_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|168aa|up_6|NZ_CP013854.1_2935328_2935832_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|144aa|up_5|NZ_CP013854.1_2935890_2936322_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|286aa|up_4|NZ_CP013854.1_2936431_2937289_+	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]	NA|413aa|up_3|NZ_CP013854.1_2937285_2938524_+	PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed	NA|245aa|up_2|NZ_CP013854.1_2938554_2939289_+	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|311aa|up_1|NZ_CP013854.1_2939746_2940679_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|230aa|up_0|NZ_CP013854.1_2940680_2941370_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|289aa|down_0|NZ_CP013854.1_2943682_2944549_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|275aa|down_1|NZ_CP013854.1_2944579_2945404_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|271aa|down_2|NZ_CP013854.1_2945425_2946238_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|71aa|down_3|NZ_CP013854.1_2946412_2946625_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|34aa|down_4|NZ_CP013854.1_2946803_2946905_+	NA	NA|348aa|down_5|NZ_CP013854.1_2946974_2948018_+	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|326aa|down_6|NZ_CP013854.1_2948050_2949028_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|294aa|down_7|NZ_CP013854.1_2949398_2950280_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|486aa|down_8|NZ_CP013854.1_2950492_2951950_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|213aa|down_9|NZ_CP013854.1_2952131_2952770_-	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family
GCF_001698125.1_ASM169812v1	NZ_CP013854	Pseudonocardia sp. HH130630-07, complete genome	6	3492214-3492321	6	CRISPRCasFinder	no		csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT	Orphan	GCCCGGGATAAGGCGCTCGAGGACGCC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT,PrimPol	NA|167aa|up_3|NZ_CP013854.1_3484111_3484612_+,NA|149aa|down_1|NZ_CP013854.1_3495730_3496177_+,NA|116aa|down_2|NZ_CP013854.1_3496169_3496517_+,NA|343aa|down_4|NZ_CP013854.1_3525380_3526409_+,NA|208aa|down_5|NZ_CP013854.1_3526447_3527071_+,NA|47aa|down_7|NZ_CP013854.1_3529861_3530002_-	NA|258aa|up_9|NZ_CP013854.1_3473110_3473884_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|291aa|up_8|NZ_CP013854.1_3475255_3476128_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|205aa|up_7|NZ_CP013854.1_3475887_3476502_-	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|1358aa|up_6|NZ_CP013854.1_3476674_3480748_-	TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb	NA|444aa|up_5|NZ_CP013854.1_3481152_3482484_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|468aa|up_4|NZ_CP013854.1_3482488_3483892_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|167aa|up_3|NZ_CP013854.1_3484111_3484612_+	NA	NA|225aa|up_2|NZ_CP013854.1_3484676_3485351_+	pfam04931, DNA_pol_phi, DNA polymerase phi	NA|368aa|up_1|NZ_CP013854.1_3485358_3486462_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|390aa|up_0|NZ_CP013854.1_3488893_3490063_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|550aa|down_0|NZ_CP013854.1_3494054_3495704_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|149aa|down_1|NZ_CP013854.1_3495730_3496177_+	NA	NA|116aa|down_2|NZ_CP013854.1_3496169_3496517_+	NA	NA|9586aa|down_3|NZ_CP013854.1_3496692_3525450_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|343aa|down_4|NZ_CP013854.1_3525380_3526409_+	NA	NA|208aa|down_5|NZ_CP013854.1_3526447_3527071_+	NA	NA|802aa|down_6|NZ_CP013854.1_3527197_3529603_+	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|47aa|down_7|NZ_CP013854.1_3529861_3530002_-	NA	NA|391aa|down_8|NZ_CP013854.1_3530178_3531351_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|902aa|down_9|NZ_CP013854.1_3531519_3534225_-	pfam00196, GerE, Bacterial regulatory proteins, luxR family
GCF_001698125.1_ASM169812v1	NZ_CP013854	Pseudonocardia sp. HH130630-07, complete genome	7	4266650-4266746	7	CRISPRCasFinder	no		csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT	Orphan	CACTCATGGAGCTTCAGCCTCGT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT,PrimPol	NA|68aa|up_8|NZ_CP013854.1_4256756_4256960_-,NA|29aa|down_3|NZ_CP013854.1_4270000_4270087_+	NA|292aa|up_9|NZ_CP013854.1_4255700_4256576_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|68aa|up_8|NZ_CP013854.1_4256756_4256960_-	NA	NA|428aa|up_7|NZ_CP013854.1_4259001_4260285_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|356aa|up_6|NZ_CP013854.1_4260308_4261376_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|162aa|up_5|NZ_CP013854.1_4261650_4262136_-	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|299aa|up_4|NZ_CP013854.1_4263169_4264066_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|193aa|up_3|NZ_CP013854.1_4264104_4264683_+	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]	NA|61aa|up_2|NZ_CP013854.1_4264754_4264937_+	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed	NA|252aa|up_1|NZ_CP013854.1_4264945_4265701_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|294aa|up_0|NZ_CP013854.1_4265713_4266595_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|106aa|down_0|NZ_CP013854.1_4266866_4267184_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|399aa|down_1|NZ_CP013854.1_4267183_4268380_+	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|354aa|down_2|NZ_CP013854.1_4268581_4269643_-	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|29aa|down_3|NZ_CP013854.1_4270000_4270087_+	NA	NA|555aa|down_4|NZ_CP013854.1_4270086_4271751_+	pfam03814, KdpA, Potassium-transporting ATPase A subunit	NA|700aa|down_5|NZ_CP013854.1_4271879_4273979_+	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|205aa|down_6|NZ_CP013854.1_4273981_4274596_+	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|898aa|down_7|NZ_CP013854.1_4274658_4277352_+	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|232aa|down_8|NZ_CP013854.1_4277348_4278044_+	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional	NA|244aa|down_9|NZ_CP013854.1_4278054_4278786_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins
GCF_001698125.1_ASM169812v1	NZ_CP013854	Pseudonocardia sp. HH130630-07, complete genome	8	5273173-5273261	8	CRISPRCasFinder	no		csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT	Orphan	AGCACCACCTCCGAAGCTGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas6e,cas5,cas7,cas3,DEDDh,DinG,RT,PrimPol	NA,NA	NA|678aa|up_9|NZ_CP013854.1_5260631_5262665_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|325aa|up_8|NZ_CP013854.1_5262685_5263660_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|285aa|up_7|NZ_CP013854.1_5263703_5264558_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|321aa|up_6|NZ_CP013854.1_5264554_5265517_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|344aa|up_5|NZ_CP013854.1_5265513_5266545_-	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]	NA|312aa|up_4|NZ_CP013854.1_5266612_5267548_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|366aa|up_3|NZ_CP013854.1_5267664_5268762_-	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|260aa|up_2|NZ_CP013854.1_5268903_5269683_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|304aa|up_1|NZ_CP013854.1_5269679_5270591_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|541aa|up_0|NZ_CP013854.1_5270587_5272210_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|479aa|down_0|NZ_CP013854.1_5273337_5274774_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|395aa|down_1|NZ_CP013854.1_5274770_5275955_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|256aa|down_2|NZ_CP013854.1_5275982_5276750_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|435aa|down_3|NZ_CP013854.1_5276751_5278056_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|163aa|down_4|NZ_CP013854.1_5278059_5278548_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|133aa|down_5|NZ_CP013854.1_5278544_5278943_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|272aa|down_6|NZ_CP013854.1_5279000_5279816_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|350aa|down_7|NZ_CP013854.1_5279858_5280908_-	cd07302, CHD, cyclase homology domain	NA|150aa|down_8|NZ_CP013854.1_5280904_5281354_-	pfam00582, Usp, Universal stress protein family	NA|408aa|down_9|NZ_CP013854.1_5281494_5282718_-	TIGR01790, Uncharacterized_carotenoid_cyclase_DR_0801, lycopene cyclase family protein
