assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001695755.1_ASM169575v1	NZ_CP016640	Mycobacterium sp. djl-10, complete genome	1	2781343-2781449	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,WYL,DinG,casR	Orphan	GGCACACATGTGTGCTCAGCTCGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,WYL,DinG,casR	NA,NA	NA|310aa|up_9|NZ_CP016640.1_2766592_2767522_+	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|1135aa|up_8|NZ_CP016640.1_2767553_2770958_+	pfam09899, DUF2126, Putative amidoligase enzyme (DUF2126)	NA|952aa|up_7|NZ_CP016640.1_2770791_2773647_+	COG2308, COG2308, Uncharacterized conserved protein [Function unknown]	NA|304aa|up_6|NZ_CP016640.1_2773643_2774555_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|358aa|up_5|NZ_CP016640.1_2774547_2775621_+	COG4307, COG4307, Uncharacterized protein conserved in bacteria [Function unknown]	NA|394aa|up_4|NZ_CP016640.1_2775765_2776947_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|454aa|up_3|NZ_CP016640.1_2776984_2778346_-	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family	NA|205aa|up_2|NZ_CP016640.1_2778353_2778968_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|281aa|up_1|NZ_CP016640.1_2779093_2779936_+	pfam11296, DUF3097, Protein of unknown function (DUF3097)	NA|445aa|up_0|NZ_CP016640.1_2779987_2781322_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|96aa|down_0|NZ_CP016640.1_2781588_2781876_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|134aa|down_1|NZ_CP016640.1_2781991_2782393_+	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|897aa|down_2|NZ_CP016640.1_2782474_2785165_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|179aa|down_3|NZ_CP016640.1_2785171_2785708_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|414aa|down_4|NZ_CP016640.1_2785700_2786942_+	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|282aa|down_5|NZ_CP016640.1_2786886_2787732_+	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type	NA|131aa|down_6|NZ_CP016640.1_2787741_2788134_+	pfam01478, Peptidase_A24, Type IV leader peptidase family	NA|466aa|down_7|NZ_CP016640.1_2788134_2789532_-	cd17504, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide)-like multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|399aa|down_8|NZ_CP016640.1_2789604_2790801_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|229aa|down_9|NZ_CP016640.1_2790818_2791505_+	PRK00131, aroK, shikimate kinase; Reviewed
GCF_001695755.1_ASM169575v1	NZ_CP016640	Mycobacterium sp. djl-10, complete genome	2	4380794-4380893	2	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,WYL,DinG,casR	Type I-A	TGTGCGGTTTACTCCGCGACACGCCGT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,WYL,DinG,casR	NA|107aa|up_7|NZ_CP016640.1_4374326_4374647_-,NA|221aa|up_3|NZ_CP016640.1_4378708_4379371_+,NA|104aa|up_0|NZ_CP016640.1_4380321_4380633_+,NA|79aa|down_0|NZ_CP016640.1_4381026_4381263_+,NA|110aa|down_1|NZ_CP016640.1_4381264_4381594_-,NA|137aa|down_8|NZ_CP016640.1_4389391_4389802_-	NA|149aa|up_9|NZ_CP016640.1_4372561_4373008_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|400aa|up_8|NZ_CP016640.1_4373072_4374272_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|107aa|up_7|NZ_CP016640.1_4374326_4374647_-	NA	NA|352aa|up_6|NZ_CP016640.1_4374799_4375855_-	pfam13449, Phytase-like, Esterase-like activity of phytase	NA|238aa|up_5|NZ_CP016640.1_4375885_4376599_-	pfam01988, VIT1, VIT family	NA|646aa|up_4|NZ_CP016640.1_4376675_4378613_+	cd01150, AXO, Peroxisomal acyl-CoA oxidase	NA|221aa|up_3|NZ_CP016640.1_4378708_4379371_+	NA	NA|190aa|up_2|NZ_CP016640.1_4379367_4379937_+	cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase subunit III	NA|90aa|up_1|NZ_CP016640.1_4379936_4380206_+	pfam03626, COX4_pro, Prokaryotic Cytochrome C oxidase subunit IV	NA|104aa|up_0|NZ_CP016640.1_4380321_4380633_+	NA	NA|79aa|down_0|NZ_CP016640.1_4381026_4381263_+	NA	NA|110aa|down_1|NZ_CP016640.1_4381264_4381594_-	NA	NA|631aa|down_2|NZ_CP016640.1_4381660_4383553_-	PRK05667, dnaG, DNA primase; Validated	NA|421aa|down_3|NZ_CP016640.1_4383557_4384820_-	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|677aa|down_4|NZ_CP016640.1_4384890_4386921_+	pfam04536, TPM_phosphatase, TPM domain	NA|462aa|down_5|NZ_CP016640.1_4387020_4388406_-	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	csa3|124aa|down_6|NZ_CP016640.1_4388541_4388913_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|134aa|down_7|NZ_CP016640.1_4388909_4389311_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|137aa|down_8|NZ_CP016640.1_4389391_4389802_-	NA	NA|294aa|down_9|NZ_CP016640.1_4389801_4390683_-	PRK14827, PRK14827, undecaprenyl pyrophosphate synthase; Provisional
GCF_001695755.1_ASM169575v1	NZ_CP016640	Mycobacterium sp. djl-10, complete genome	3	4641086-4641175	3	CRISPRCasFinder	no	csa3,DEDDh	DEDDh,csa3,cas3,WYL,DinG,casR	Type I-A	GTCCCTCGCCAGCCTCGGACTCGGGTCAGT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,WYL,DinG,casR	NA|70aa|up_4|NZ_CP016640.1_4635646_4635856_-,NA|185aa|down_2|NZ_CP016640.1_4645115_4645670_+	NA|150aa|up_9|NZ_CP016640.1_4629520_4629970_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|383aa|up_8|NZ_CP016640.1_4630018_4631167_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|663aa|up_7|NZ_CP016640.1_4631159_4633148_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|523aa|up_6|NZ_CP016640.1_4633153_4634722_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|207aa|up_5|NZ_CP016640.1_4634819_4635440_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|70aa|up_4|NZ_CP016640.1_4635646_4635856_-	NA	NA|612aa|up_3|NZ_CP016640.1_4635974_4637810_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|251aa|up_2|NZ_CP016640.1_4637952_4638705_+	pfam05423, Mycobact_memb, Mycobacterium membrane protein	NA|429aa|up_1|NZ_CP016640.1_4638870_4640157_-	COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only]	NA|269aa|up_0|NZ_CP016640.1_4640227_4641034_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|514aa|down_0|NZ_CP016640.1_4642657_4644199_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	DEDDh|212aa|down_1|NZ_CP016640.1_4644283_4644919_+	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|185aa|down_2|NZ_CP016640.1_4645115_4645670_+	NA	NA|408aa|down_3|NZ_CP016640.1_4645674_4646898_-	pfam17964, Big_10, Bacterial Ig domain	NA|137aa|down_4|NZ_CP016640.1_4647298_4647709_+	cd17243, RMtype1_S_AchA6I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Arthrobacter chlorophenolicus A6 S subunit (S	NA|75aa|down_5|NZ_CP016640.1_4648502_4648727_-	pfam12277, DUF3618, Protein of unknown function (DUF3618)	NA|158aa|down_6|NZ_CP016640.1_4648850_4649324_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|446aa|down_7|NZ_CP016640.1_4649380_4650718_-	pfam13458, Peripla_BP_6, Periplasmic binding protein	NA|231aa|down_8|NZ_CP016640.1_4650738_4651431_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|280aa|down_9|NZ_CP016640.1_4651423_4652263_-	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
GCF_001695755.1_ASM169575v1	NZ_CP016640	Mycobacterium sp. djl-10, complete genome	4	4984770-4985030	1	CRT	no		DEDDh,csa3,cas3,WYL,DinG,casR	Orphan	GCCGCCNTTNCCNCCGTTGCCGCC	24	0	0	NA	NA	NA	4	4	Orphan	DEDDh,csa3,cas3,WYL,DinG,casR	NA|181aa|up_2|NZ_CP016640.1_4982219_4982762_-,NA|161aa|down_3|NZ_CP016640.1_4989101_4989584_+	NA|416aa|up_9|NZ_CP016640.1_4975525_4976773_+	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]	NA|380aa|up_8|NZ_CP016640.1_4976924_4978064_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|137aa|up_7|NZ_CP016640.1_4978070_4978481_-	PRK03100, PRK03100, Sec-independent protein translocase subunit TatB	NA|567aa|up_6|NZ_CP016640.1_4978480_4980181_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|141aa|up_5|NZ_CP016640.1_4980092_4980515_-	TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor	NA|257aa|up_4|NZ_CP016640.1_4980610_4981381_-	PRK09647, PRK09647, RNA polymerase sigma factor SigE; Reviewed	NA|249aa|up_3|NZ_CP016640.1_4981463_4982210_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|181aa|up_2|NZ_CP016640.1_4982219_4982762_-	NA	NA|349aa|up_1|NZ_CP016640.1_4982890_4983937_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|144aa|up_0|NZ_CP016640.1_4984125_4984557_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|212aa|down_0|NZ_CP016640.1_4985921_4986557_+	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|300aa|down_1|NZ_CP016640.1_4986546_4987446_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|520aa|down_2|NZ_CP016640.1_4987520_4989080_+	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]	NA|161aa|down_3|NZ_CP016640.1_4989101_4989584_+	NA	NA|405aa|down_4|NZ_CP016640.1_4989585_4990800_-	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|385aa|down_5|NZ_CP016640.1_4990966_4992121_+	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family	NA|56aa|down_6|NZ_CP016640.1_4992170_4992338_-	pfam11314, DUF3117, Protein of unknown function (DUF3117)	NA|189aa|down_7|NZ_CP016640.1_4992460_4993027_-	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|106aa|down_8|NZ_CP016640.1_4993019_4993337_-	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain	NA|318aa|down_9|NZ_CP016640.1_4993359_4994313_-	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional
GCF_001695755.1_ASM169575v1	NZ_CP016640	Mycobacterium sp. djl-10, complete genome	5	5886799-5886889	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,WYL,DinG,casR	Orphan	CGGGCCCTGACTCCCCGGCTCGTCCCTCAC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,WYL,DinG,casR	NA|100aa|up_9|NZ_CP016640.1_5878387_5878687_-,NA|49aa|down_0|NZ_CP016640.1_5886909_5887056_-	NA|100aa|up_9|NZ_CP016640.1_5878387_5878687_-	NA	NA|303aa|up_8|NZ_CP016640.1_5878792_5879701_+	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF	NA|201aa|up_7|NZ_CP016640.1_5879697_5880300_+	pfam16170, DUF4873, Domain of unknown function (DUF4873)	NA|265aa|up_6|NZ_CP016640.1_5880289_5881084_-	PRK08260, PRK08260, enoyl-CoA hydratase; Provisional	NA|259aa|up_5|NZ_CP016640.1_5881142_5881919_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|758aa|up_4|NZ_CP016640.1_5881983_5884257_-	COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]	NA|154aa|up_3|NZ_CP016640.1_5884381_5884843_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|105aa|up_2|NZ_CP016640.1_5884849_5885164_-	pfam16525, MHB, Haemophore, haem-binding	NA|293aa|up_1|NZ_CP016640.1_5885453_5886332_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|149aa|up_0|NZ_CP016640.1_5886340_5886787_+	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|49aa|down_0|NZ_CP016640.1_5886909_5887056_-	NA	NA|432aa|down_1|NZ_CP016640.1_5887167_5888463_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|216aa|down_2|NZ_CP016640.1_5888463_5889111_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|252aa|down_3|NZ_CP016640.1_5889168_5889924_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|152aa|down_4|NZ_CP016640.1_5889946_5890402_-	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|264aa|down_5|NZ_CP016640.1_5890437_5891229_-	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	NA|399aa|down_6|NZ_CP016640.1_5891234_5892431_-	TIGR04253, mesacon_CoA_iso, mesaconyl-CoA isomerase	NA|167aa|down_7|NZ_CP016640.1_5892664_5893165_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|150aa|down_8|NZ_CP016640.1_5893191_5893641_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|268aa|down_9|NZ_CP016640.1_5893637_5894441_+	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein
GCF_001695755.1_ASM169575v1	NZ_CP016640	Mycobacterium sp. djl-10, complete genome	6	5959514-5959620	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,WYL,DinG,casR	Orphan	GTAAACCGCACACATGTCGCGTCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,WYL,DinG,casR	NA|159aa|up_1|NZ_CP016640.1_5957741_5958218_+,NA	NA|165aa|up_9|NZ_CP016640.1_5949043_5949538_-	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|374aa|up_8|NZ_CP016640.1_5949733_5950855_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|302aa|up_7|NZ_CP016640.1_5950851_5951757_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|426aa|up_6|NZ_CP016640.1_5951807_5953085_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|293aa|up_5|NZ_CP016640.1_5953026_5953905_-	pfam01694, Rhomboid, Rhomboid family	NA|763aa|up_4|NZ_CP016640.1_5953955_5956244_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|196aa|up_3|NZ_CP016640.1_5956345_5956933_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|243aa|up_2|NZ_CP016640.1_5956969_5957698_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|159aa|up_1|NZ_CP016640.1_5957741_5958218_+	NA	NA|412aa|up_0|NZ_CP016640.1_5958217_5959453_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|398aa|down_0|NZ_CP016640.1_5959682_5960876_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|down_1|NZ_CP016640.1_5960868_5962002_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|370aa|down_2|NZ_CP016640.1_5961998_5963108_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|253aa|down_3|NZ_CP016640.1_5963104_5963863_-	COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only]	NA|350aa|down_4|NZ_CP016640.1_5964121_5965171_+	cd01005, PBP2_CysP, Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|513aa|down_5|NZ_CP016640.1_5965175_5966714_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|416aa|down_6|NZ_CP016640.1_5966742_5967990_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|190aa|down_7|NZ_CP016640.1_5968113_5968683_-	PRK13756, PRK13756, TetR family transcriptional regulator	NA|280aa|down_8|NZ_CP016640.1_5968815_5969655_+	pfam02211, NHase_beta, Nitrile hydratase beta subunit	NA|235aa|down_9|NZ_CP016640.1_5969651_5970356_+	TIGR03887, Thiocyanate_hydrolase_subunit_gamma, thiocyanate hydrolase, gamma subunit
