assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001693315.1_ASM169331v1	NZ_CP016497	Escherichia coli strain UPEC 26-1 chromosome, complete genome	1	337070-337183	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3,RT	NA,NA	NA|268aa|up_9|NZ_CP016497.1_326014_326818_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|309aa|up_8|NZ_CP016497.1_326858_327785_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP016497.1_327977_329168_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP016497.1_329164_330424_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP016497.1_330413_332042_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP016497.1_332314_333673_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP016497.1_333677_334754_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP016497.1_334956_335607_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP016497.1_335660_335915_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP016497.1_335914_337045_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP016497.1_337234_339520_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP016497.1_340201_343960_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP016497.1_344099_344822_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP016497.1_344968_347596_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP016497.1_347744_349433_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP016497.1_349429_350053_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP016497.1_350196_354591_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP016497.1_354591_356241_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP016497.1_356245_357022_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP016497.1_357095_358280_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_001693315.1_ASM169331v1	NZ_CP016497	Escherichia coli strain UPEC 26-1 chromosome, complete genome	2	1101861-1101984	2	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3,RT	NA,NA|30aa|down_7|NZ_CP016497.1_1110880_1110970_+	NA|471aa|up_9|NZ_CP016497.1_1091312_1092725_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP016497.1_1093282_1093492_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP016497.1_1093947_1094574_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP016497.1_1094594_1096697_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP016497.1_1096709_1097348_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP016497.1_1097411_1098080_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP016497.1_1098076_1098862_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP016497.1_1098865_1099678_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP016497.1_1099683_1101294_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP016497.1_1101419_1101725_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP016497.1_1102298_1103555_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP016497.1_1103595_1104969_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP016497.1_1105183_1105825_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP016497.1_1105864_1107013_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP016497.1_1107303_1108515_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP016497.1_1108627_1109560_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP016497.1_1109556_1110582_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP016497.1_1110880_1110970_+	NA	NA|390aa|down_8|NZ_CP016497.1_1111135_1112305_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP016497.1_1112450_1113032_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001693315.1_ASM169331v1	NZ_CP016497	Escherichia coli strain UPEC 26-1 chromosome, complete genome	3	1836896-1836987	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3,RT	NA|70aa|up_9|NZ_CP016497.1_1826146_1826356_-,NA	NA|70aa|up_9|NZ_CP016497.1_1826146_1826356_-	NA	NA|1321aa|up_8|NZ_CP016497.1_1826410_1830373_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP016497.1_1830412_1831051_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP016497.1_1831338_1832430_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP016497.1_1832429_1833122_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP016497.1_1833133_1833520_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP016497.1_1833527_1834328_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP016497.1_1834337_1834928_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP016497.1_1834938_1835433_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP016497.1_1835453_1836782_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP016497.1_1837410_1838007_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP016497.1_1838027_1838255_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP016497.1_1838292_1839534_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP016497.1_1840068_1840989_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP016497.1_1840988_1841294_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP016497.1_1841649_1842249_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP016497.1_1842245_1844792_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP016497.1_1844791_1845964_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP016497.1_1846093_1846786_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP016497.1_1846758_1847787_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_001693315.1_ASM169331v1	NZ_CP016497	Escherichia coli strain UPEC 26-1 chromosome, complete genome	4	2854490-2854622	1	PILER-CR	no		DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3,RT	NA,NA	NA|105aa|up_9|NZ_CP016497.1_2845889_2846204_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP016497.1_2846206_2846440_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP016497.1_2846525_2847005_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP016497.1_2847196_2849059_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP016497.1_2849051_2849582_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP016497.1_2849689_2851021_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP016497.1_2851079_2851367_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP016497.1_2851363_2852650_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP016497.1_2852672_2853614_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP016497.1_2853628_2854399_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP016497.1_2854871_2856386_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP016497.1_2856416_2857559_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP016497.1_2857686_2858904_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP016497.1_2858976_2860530_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP016497.1_2860638_2861424_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP016497.1_2861429_2862020_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP016497.1_2862138_2862534_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP016497.1_2862794_2866016_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP016497.1_2866033_2867182_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP016497.1_2867637_2868459_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_001693315.1_ASM169331v1	NZ_CP016497	Escherichia coli strain UPEC 26-1 chromosome, complete genome	5	3026106-3026245	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas14j,WYL,c2c9_V-U4,csa3,RT	NA,NA	NA|340aa|up_9|NZ_CP016497.1_3014315_3015335_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP016497.1_3015338_3015902_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP016497.1_3016118_3017150_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP016497.1_3017173_3017938_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP016497.1_3018002_3019322_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP016497.1_3019388_3020387_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|510aa|up_3|NZ_CP016497.1_3020464_3021994_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP016497.1_3022128_3023211_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP016497.1_3023210_3024311_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP016497.1_3024577_3026089_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP016497.1_3026346_3026790_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP016497.1_3026789_3029645_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP016497.1_3029691_3030879_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP016497.1_3031071_3031575_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP016497.1_3031752_3032169_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP016497.1_3032330_3033335_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP016497.1_3033379_3033832_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP016497.1_3034509_3035730_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|311aa|down_8|NZ_CP016497.1_3035740_3036673_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP016497.1_3036696_3037701_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
