assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001692635.1_ASM169263v1	NZ_CP016586	Salmonella enterica subsp. enterica serovar Heidelberg strain SH13-004 chromosome, complete genome	1	2812501-2812610	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|198aa|up_4|NZ_CP016586.1_2806373_2806967_+,NA|276aa|up_2|NZ_CP016586.1_2808884_2809712_-,NA	NA|161aa|up_9|NZ_CP016586.1_2787086_2787569_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|3825aa|up_8|NZ_CP016586.1_2788184_2799659_+	pfam17936, Big_6, Bacterial Ig domain	NA|470aa|up_7|NZ_CP016586.1_2799723_2801133_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|727aa|up_6|NZ_CP016586.1_2801129_2803310_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|388aa|up_5|NZ_CP016586.1_2803317_2804481_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|198aa|up_4|NZ_CP016586.1_2806373_2806967_+	NA	NA|398aa|up_3|NZ_CP016586.1_2807356_2808550_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|NZ_CP016586.1_2808884_2809712_-	NA	NA|72aa|up_1|NZ_CP016586.1_2810162_2810378_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|NZ_CP016586.1_2810413_2812483_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|NZ_CP016586.1_2812985_2814269_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|273aa|down_1|NZ_CP016586.1_2814313_2815132_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|down_2|NZ_CP016586.1_2815284_2815641_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_3|NZ_CP016586.1_2815735_2816020_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_4|NZ_CP016586.1_2816132_2816654_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_5|NZ_CP016586.1_2816650_2817025_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_6|NZ_CP016586.1_2817021_2818002_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_7|NZ_CP016586.1_2818012_2819026_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_8|NZ_CP016586.1_2819320_2820523_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_9|NZ_CP016586.1_2820596_2821232_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase
GCF_001692635.1_ASM169263v1	NZ_CP016586	Salmonella enterica subsp. enterica serovar Heidelberg strain SH13-004 chromosome, complete genome	2	3003623-3005292	2,1,1,2,2,3,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,29,29,28,29,29,30	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E:I-E	25,26,22,22,26,25,22	26	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP016586.1_2995489_2996251_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP016586.1_2996231_2997281_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP016586.1_2997277_2997757_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP016586.1_2997756_2998467_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP016586.1_2998485_2998797_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP016586.1_2998987_2999311_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP016586.1_2999361_2999967_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP016586.1_2999953_3001393_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP016586.1_3001402_3002311_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP016586.1_3002561_3003608_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP016586.1_3005387_3005681_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP016586.1_3005680_3006601_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP016586.1_3006597_3007248_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP016586.1_3007229_3007976_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP016586.1_3007986_3009045_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP016586.1_3009058_3009619_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP016586.1_3009615_3011172_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP016586.1_3011183_3013847_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP016586.1_3014290_3015244_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP016586.1_3015456_3016191_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001692635.1_ASM169263v1	NZ_CP016586	Salmonella enterica subsp. enterica serovar Heidelberg strain SH13-004 chromosome, complete genome	3	3021549-3022370	4,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	cas7|353aa|up_9|NZ_CP016586.1_3007986_3009045_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP016586.1_3009058_3009619_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP016586.1_3009615_3011172_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP016586.1_3011183_3013847_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP016586.1_3014290_3015244_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP016586.1_3015456_3016191_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP016586.1_3016266_3017979_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP016586.1_3017978_3019778_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP016586.1_3020201_3020564_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP016586.1_3020653_3021451_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP016586.1_3022666_3023338_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP016586.1_3023473_3024772_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP016586.1_3024854_3026492_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP016586.1_3026719_3027520_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP016586.1_3028124_3028712_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP016586.1_3028791_3031491_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP016586.1_3031503_3032277_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP016586.1_3032296_3032803_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP016586.1_3032817_3033288_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP016586.1_3033284_3033821_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_001692635.1_ASM169263v1	NZ_CP016587	Salmonella enterica subsp. enterica serovar Heidelberg strain SH13-004 plasmid pSH13-004_37, complete sequence	1	23660-23779	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|182aa|up_9|NZ_CP016587.1_19292_19838_-,NA|91aa|up_8|NZ_CP016587.1_20163_20436_-,NA|66aa|up_7|NZ_CP016587.1_20448_20646_-,NA|60aa|up_6|NZ_CP016587.1_20667_20847_-,NA|110aa|up_5|NZ_CP016587.1_20889_21219_-,NA|72aa|up_4|NZ_CP016587.1_21311_21527_-,NA|82aa|up_3|NZ_CP016587.1_21516_21762_-,NA|108aa|up_2|NZ_CP016587.1_21806_22130_-,NA|149aa|down_1|NZ_CP016587.1_24907_25354_+,NA|142aa|down_2|NZ_CP016587.1_25421_25847_+,NA|326aa|down_3|NZ_CP016587.1_25843_26821_-,NA|94aa|down_4|NZ_CP016587.1_26845_27127_-,NA|28aa|down_7|NZ_CP016587.1_29066_29150_-,NA|110aa|down_8|NZ_CP016587.1_30478_30808_+,NA|117aa|down_9|NZ_CP016587.1_30958_31309_+	NA|182aa|up_9|NZ_CP016587.1_19292_19838_-	NA	NA|91aa|up_8|NZ_CP016587.1_20163_20436_-	NA	NA|66aa|up_7|NZ_CP016587.1_20448_20646_-	NA	NA|60aa|up_6|NZ_CP016587.1_20667_20847_-	NA	NA|110aa|up_5|NZ_CP016587.1_20889_21219_-	NA	NA|72aa|up_4|NZ_CP016587.1_21311_21527_-	NA	NA|82aa|up_3|NZ_CP016587.1_21516_21762_-	NA	NA|108aa|up_2|NZ_CP016587.1_21806_22130_-	NA	NA|94aa|up_1|NZ_CP016587.1_22275_22557_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP016587.1_22546_22798_-	PRK02854, PRK02854, primosomal protein DnaT	NA|279aa|down_0|NZ_CP016587.1_24031_24868_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_1|NZ_CP016587.1_24907_25354_+	NA	NA|142aa|down_2|NZ_CP016587.1_25421_25847_+	NA	NA|326aa|down_3|NZ_CP016587.1_25843_26821_-	NA	NA|94aa|down_4|NZ_CP016587.1_26845_27127_-	NA	NA|221aa|down_5|NZ_CP016587.1_27224_27887_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|215aa|down_6|NZ_CP016587.1_28267_28912_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|28aa|down_7|NZ_CP016587.1_29066_29150_-	NA	NA|110aa|down_8|NZ_CP016587.1_30478_30808_+	NA	NA|117aa|down_9|NZ_CP016587.1_30958_31309_+	NA
