The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	0	60546	4128979	tRNA,transposase	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930208.1|45761_46712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|47298_47847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|47818_48055_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|48182_49076_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|50245_51493_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|51489_52104_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|52239_53190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|53232_54489_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|55720_56455_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|56460_57051_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|57075_57765_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|57761_58523_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|58602_59502_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|59595_60546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	71183	124171	4128979	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_005012808.1|71183_72134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|72227_72542_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|73734_75642_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|75803_76424_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|76455_77037_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|77125_77377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|77378_78221_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|78326_79736_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|79732_80683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|80757_81702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_050846609.1|81698_83573_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	3.3e-23
WP_003807102.1|84920_85625_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|85621_86728_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|86989_87583_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|87579_88767_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|88829_90089_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|90112_91201_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|91208_92309_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|92312_92888_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|92891_93944_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|94074_95082_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|95083_96370_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|96566_97370_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|97366_98233_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|98307_99438_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|99437_100277_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|101209_101812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|101841_102495_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|102627_103884_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|103964_104831_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|104906_105182_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|105189_105852_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|105913_106915_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|106929_107478_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|107535_108432_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|108428_109490_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|109525_110476_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|111375_112569_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|112650_113280_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|113341_114025_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|114034_115717_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|116004_116352_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|116442_116760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|117042_118059_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|118134_118935_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|118931_119807_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|119817_121110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|121152_122193_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|122298_123120_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|123220_124171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	166990	305131	4128979	transposase,tRNA,protease	Klosneuvirus(10.53%)	117	NA	NA
WP_005015810.1|166990_167941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|169384_170287_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|170264_170894_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|171176_172607_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|172640_173270_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|173318_174926_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|174950_175634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|175715_176192_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|176398_177349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178464_178992_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|179083_179899_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179959_180694_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180731_182810_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|183059_183332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|183433_184519_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184522_186427_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023999174.1|186423_190110_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|190170_190734_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190741_191164_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|191191_191611_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|191639_192086_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|192212_192710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192864_195135_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|195210_196416_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|197568_198204_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|198200_199094_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199488_200589_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200670_201045_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201104_203969_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204113_204854_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204923_206135_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206163_207132_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|207745_208696_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|208852_209176_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|209280_210321_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|210326_211106_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|211151_211448_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|211473_211749_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|211805_212450_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|212449_213136_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|213334_214117_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|214167_214893_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|214924_216274_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|216385_217318_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|217775_220571_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|221164_224008_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|224178_224898_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|224936_225485_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|225639_226539_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|226563_227514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|227732_228428_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|228444_229857_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|229969_231400_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|231441_233355_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|233673_234240_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|234330_235332_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|235446_236397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|236483_237434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|237430_238381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238479_239277_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240226_240637_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|241658_242402_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242445_243489_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243659_245762_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247172_248129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248147_248639_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248635_249991_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|249991_250690_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250686_251388_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251640_252690_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252795_253737_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253733_255623_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|255709_256348_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|256490_257876_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257806_258343_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258494_259886_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259902_260883_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261018_262002_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262066_262966_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263072_264827_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264834_265959_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265972_266953_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267683_268634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269193_269739_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|269864_271442_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271457_272612_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272625_272751_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272747_274499_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274495_276175_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276237_276786_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277928_278207_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279250_280201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|280187_280403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280478_280640_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|281306_281756_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281765_282377_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|282535_283384_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283409_284792_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284856_285498_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285637_286096_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|286120_286897_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|286950_288087_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|288083_289034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|289132_289759_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|289781_290708_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|290716_292303_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|292299_293304_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|293503_294364_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|294395_295397_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|295467_296277_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|296354_298214_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|298342_299545_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|299658_300540_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|302042_302603_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|302662_303613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|303804_304092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|304180_305131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	392968	450477	4128979	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|392968_393919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|394055_394973_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|394969_395218_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|395214_396420_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|396492_397488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|397510_398731_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|398727_399372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929483.1|401102_401912_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|402216_403170_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|403268_404252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|404178_404880_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|404928_405699_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|405695_406874_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|407041_408748_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|408744_409641_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|409681_411271_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|411320_412313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|412381_412981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|413441_414422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|414497_415448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|415536_416451_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|416447_417107_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|417196_418120_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|418125_418581_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|418577_419681_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|419636_419909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|419868_421488_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|421484_422543_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|422672_423167_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|423259_424237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|424432_425638_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|425634_427146_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|427161_428475_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|428665_428845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|429254_429989_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|432433_433384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|433515_433914_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|434324_434795_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|434883_435228_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|435327_436728_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|438516_439035_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|439145_439901_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|440096_441329_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|441321_442107_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|442173_443145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|443155_444133_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|444258_445431_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|445457_446486_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|446551_447745_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|449526_450477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	591482	652671	4128979	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591482_592433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592908_593799_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593795_594617_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594814_595306_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595324_596398_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596444_597548_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597623_598244_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598264_598774_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598828_599080_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599143_600277_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600284_600671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600667_603187_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603615_603954_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603950_604457_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604518_605319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605429_606371_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606464_608000_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609679_611530_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611533_612367_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612366_613308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613559_614531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614672_616961_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617267_618176_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618230_619196_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619270_620932_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|621003_621714_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621862_622813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623511_623895_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623952_624555_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624572_624974_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625089_626001_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625997_626579_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627373_628108_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628148_629198_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629345_629924_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630310_631288_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631381_635776_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635976_636825_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636983_637796_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637851_638802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638900_639701_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639762_640146_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640157_641510_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641797_642127_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642129_642879_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643061_643982_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644028_644241_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644263_644686_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644702_645803_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645899_647417_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647492_648332_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648353_649226_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649316_650411_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650704_651655_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651729_652671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	657995	705235	4128979	tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(17.39%)	51	NA	NA
WP_023995141.1|657995_659021_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659061_659301_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659370_660960_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660959_661508_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661588_662161_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662179_663091_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663164_664133_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664255_665329_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665333_667154_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667230_668181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668269_668605_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668738_669389_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669410_670829_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670898_671654_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671622_672381_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672391_673273_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673289_673997_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673999_674758_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674967_676710_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676702_677227_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677266_678061_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678228_679302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679400_680351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680602_680809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680880_681492_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682046_682298_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682290_682980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683236_684187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033469562.1|684826_685312_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685298_686576_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686578_687997_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688025_689081_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689086_689329_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689451_690054_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|691531_692482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_024000668.1|692499_693147_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|693156_693408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|693470_693953_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|693966_694155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|694154_694550_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|694546_694945_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|694941_695364_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|695371_695872_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|696126_696645_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696654_696984_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|697001_697292_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697317_699930_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699939_700299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|700366_700900_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700896_701286_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701278_705235_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	711401	765331	4128979	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|711401_713132_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713184_713613_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713615_714296_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714295_714754_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714790_715765_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715781_717098_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717129_717627_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717713_718403_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718402_719452_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719448_720243_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720411_720762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720737_721295_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|722424_723375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|725512_726742_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726744_728187_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728291_729437_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729468_730266_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730290_731850_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731846_734219_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|734328_735432_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735431_736124_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736267_736969_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736953_737331_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738062_739013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739172_740045_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740385_740604_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740643_742023_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742064_743462_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743501_745154_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_050846650.1|745157_746042_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746041_746983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747061_748681_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748847_749663_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749730_750300_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750300_751251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751905_753003_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753036_754302_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_076879619.1|754459_755410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755653_756244_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756259_758704_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758823_759795_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759926_760451_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760410_761361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761582_763778_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|763850_764258_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|764380_765331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	887920	955904	4128979	transposase	Bacillus_phage(33.33%)	55	NA	NA
WP_023994644.1|887920_888937_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889133_890117_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891715_893104_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893134_894124_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894234_895467_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895748_896549_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896571_898803_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899590_900037_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900058_900805_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900948_901926_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902559_903171_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903164_904382_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904522_905473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905469_906189_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906309_908469_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908559_908829_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908917_909124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909122_909650_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909668_910448_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910615_911632_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911704_912196_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912206_913922_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915085_916036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916032_917865_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918263_918923_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919450_920131_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920412_921129_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921143_922445_-	phospholipase	NA	NA	NA	NA	NA
WP_010930057.1|927709_929062_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929090_929612_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929608_931063_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931097_931346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931451_932327_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932352_933408_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933420_934212_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934244_935615_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936791_937742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937794_938016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938175_938388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938507_939626_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939722_939938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940131_940383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940495_941446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941442_941826_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941880_943695_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943844_944672_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944717_945698_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945694_945907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945903_947085_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_010930070.1|947248_947983_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
WP_010930071.1|947984_950597_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950732_952646_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953261_953672_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953769_954855_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954953_955904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1025448	1086929	4128979	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	56	NA	NA
WP_010929584.1|1025448_1026399_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026497_1027238_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027432_1029469_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029486_1030497_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030614_1031808_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031837_1032611_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032607_1033798_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033823_1034762_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034758_1037107_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037261_1037903_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039232_1039385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039416_1039965_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039983_1040469_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040646_1041585_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041587_1041905_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041950_1042895_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1042915_1044391_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1044575_1045226_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045279_1045615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045611_1046472_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046488_1046770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046843_1047107_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047350_1048301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048599_1049337_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049772_1050096_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050130_1050691_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050811_1051687_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051699_1052647_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052748_1053042_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053068_1055126_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055140_1055641_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055714_1057421_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058284_1059337_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059389_1059779_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059787_1060420_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010929632.1|1060519_1061536_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062366_1063374_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063370_1065014_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1065010_1065898_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066038_1066512_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066501_1067524_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067520_1068948_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_062826590.1|1069885_1070902_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071234_1072170_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072219_1074100_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074166_1074511_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074655_1075792_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075788_1076862_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077019_1078456_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078546_1079188_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930320.1|1079523_1080540_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1080872_1083605_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083671_1085093_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085356_1086073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086157_1086475_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086515_1086929_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 10
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1095997	1159585	4128979	transposase,tRNA	Planktothrix_phage(18.18%)	49	NA	NA
WP_010931070.1|1095997_1096948_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1097046_1097997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098364_1099141_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099185_1100043_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100064_1101081_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101215_1102256_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102450_1104532_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104767_1106261_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106491_1107286_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107506_1108865_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108861_1109704_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109722_1111609_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111550_1111802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111846_1112479_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112497_1113100_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_076879620.1|1113251_1114202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114782_1115490_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115848_1116835_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116974_1117988_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117984_1118935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119047_1119506_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119542_1120856_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120873_1121245_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1121241_1122705_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122845_1123574_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123555_1126405_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1126617_1127568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127735_1128560_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128559_1129438_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130342_1131458_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131486_1132281_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132277_1134143_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134221_1134854_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134850_1135153_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135195_1136716_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1136722_1137478_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1137507_1138612_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1138714_1140415_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1140396_1141374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141383_1142664_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1142656_1143352_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143385_1144213_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1144494_1147725_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1148460_1152387_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1154286_1156083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156082_1157051_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157120_1157966_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158033_1158588_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158634_1159585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1177376	1221972	4128979	transposase,tRNA	Bacillus_phage(50.0%)	39	NA	NA
WP_005012067.1|1177376_1178327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1178425_1179376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1179505_1180489_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1180543_1181266_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1182744_1184100_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1184180_1186556_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1186720_1188796_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1188857_1189652_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1189759_1190722_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1190709_1191465_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1191572_1193210_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1193277_1194015_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1194117_1194693_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1194865_1195402_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1195434_1195749_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1195764_1196610_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1196648_1198028_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1198105_1198987_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1199085_1200036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|1200134_1201085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1201183_1202134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1202130_1202541_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1202648_1203503_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1203495_1204458_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1204503_1205628_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1205733_1206612_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1206736_1207516_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1207669_1209091_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1209525_1211223_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1211449_1212391_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1212717_1213464_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1213471_1214398_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1214519_1215437_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1215476_1216430_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1216454_1217033_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1218706_1219315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1219392_1219746_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1219829_1220819_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023853639.1|1221021_1221972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1321108	1389595	4128979	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1321108_1322059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1322827_1323466_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1324355_1324802_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1324883_1325585_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1325585_1326353_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1326349_1327588_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1327587_1328514_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1328616_1329732_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1329747_1330698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1331051_1331633_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1331629_1332463_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1332673_1333987_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1334163_1335045_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1335064_1335916_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1335968_1337057_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1337167_1338295_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1338529_1339141_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1339239_1340190_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1340411_1340789_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1340936_1341434_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1341430_1341958_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1342091_1342907_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1342919_1344101_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1344148_1345042_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1345168_1345639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050846617.1|1345764_1346592_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1346620_1347397_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1347393_1347669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1347683_1348148_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1348159_1348861_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1348970_1349471_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1349553_1350732_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1352359_1352695_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1352882_1354331_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1354388_1354733_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1354839_1355379_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1355471_1356422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1356520_1356928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1357160_1357592_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1357773_1358178_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1359414_1359738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1359740_1360628_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1360660_1361086_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1361157_1361511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1361750_1362257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1362295_1363627_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1363686_1364502_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1364498_1365353_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1368415_1370959_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1372325_1374080_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1374076_1376197_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1376201_1378397_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1378393_1381735_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1384537_1385488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1385553_1385733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1385849_1386605_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1386591_1387737_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1388644_1389595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1450086	1505574	4128979	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1450086_1451037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1452238_1452685_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1452677_1454153_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1454149_1454905_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1454897_1455908_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1455897_1457574_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1457886_1458219_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1458232_1458628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1458637_1458964_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1458960_1459287_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1459213_1460236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1460232_1460583_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1460630_1461059_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1461066_1462440_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1462580_1462958_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1463220_1464528_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1464588_1465419_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1465415_1465904_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1465945_1467466_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1467509_1467986_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1468789_1471387_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1471416_1472238_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1472964_1473714_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1473897_1474776_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1474873_1475590_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1475604_1476165_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1476331_1477096_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1477115_1477973_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1477969_1479169_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1479208_1480543_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1480595_1482932_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1483057_1483621_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1483629_1484721_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1484792_1485248_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1485248_1486043_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1486039_1487221_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1487207_1487813_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1487809_1488583_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1488594_1489422_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1489583_1491947_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1492014_1492734_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1492857_1493283_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1493317_1494268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1494385_1495312_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1495377_1496535_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1496515_1496983_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1497130_1498081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1498097_1498532_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1498521_1498872_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1499068_1500223_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1500219_1501392_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1501439_1502333_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1502378_1502816_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1502875_1503565_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1503574_1504525_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1504623_1505574_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1600271	1660183	4128979	tRNA,transposase	Streptococcus_virus(11.11%)	50	NA	NA
WP_010930416.1|1600271_1600760_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1600877_1601456_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1601561_1601930_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1602028_1602979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1602985_1604098_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1604784_1605987_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1606190_1608851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1608863_1612268_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1612935_1615161_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1615207_1615534_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1615584_1616193_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1616291_1617242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1617311_1618076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1618072_1618609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1618775_1619627_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1619686_1620313_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010929591.1|1620309_1621260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1621358_1622471_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1622460_1623462_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1623567_1625079_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1625075_1626380_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1626491_1627052_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1627319_1627874_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1628329_1628545_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1628799_1631397_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1631393_1632581_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1633239_1633854_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1633942_1635064_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1635081_1635987_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1636879_1637830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1638011_1638764_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1638832_1639492_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1639488_1640217_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1640229_1642509_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1642533_1642737_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1642778_1643411_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1643546_1644464_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1644460_1645174_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1645411_1646182_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1646186_1646786_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1647030_1648521_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1648579_1648864_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1649429_1650356_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1650492_1651233_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1651399_1652776_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1652957_1653863_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930447.1|1653945_1655637_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
WP_010930742.1|1655735_1656686_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811159.1|1658483_1659134_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1659232_1660183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1705355	1760945	4128979	transposase	Brazilian_cedratvirus(25.0%)	46	NA	NA
WP_005013747.1|1705355_1706306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1706364_1707138_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1707130_1708687_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1708683_1709634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1710960_1711563_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1711802_1712504_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1712497_1713280_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1713464_1714415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1714513_1715251_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1715440_1716199_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1716245_1717235_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1717412_1718381_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1719920_1720889_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1720897_1721839_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1722312_1723323_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1723313_1724828_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1724824_1726171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1726173_1727208_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1727257_1728883_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1729435_1730386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1730490_1731438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1731491_1733306_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1733298_1733973_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1734102_1737177_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1737190_1737490_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1737804_1738428_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1738671_1739541_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1739518_1740463_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1740548_1741475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1741587_1742367_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1742357_1743554_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1743584_1744535_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1744756_1745446_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1745510_1746266_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1746317_1747310_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1747319_1748273_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1748388_1749351_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1750752_1751181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1751177_1752128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1752421_1753144_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930505.1|1754772_1755123_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1756872_1757844_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1757857_1758571_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1758575_1759493_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1759599_1759896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1759994_1760945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1768241	1831207	4128979	transposase,tRNA	Klosneuvirus(12.5%)	55	NA	NA
WP_005013747.1|1768241_1769192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1769235_1769778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1769875_1770724_+	hydrolase	NA	NA	NA	NA	NA
WP_010930514.1|1770773_1771223_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930515.1|1771219_1772221_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1772233_1773028_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1773076_1774978_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1774974_1775598_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1775724_1776849_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1777229_1778834_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1778989_1779766_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1779850_1780849_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1780845_1781619_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_005012067.1|1782603_1783554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1783591_1784179_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1784196_1784580_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1785939_1787232_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1787366_1788407_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1788504_1789521_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1789788_1790424_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1790561_1791320_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1791304_1792084_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1792101_1792986_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1792982_1793762_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1793788_1794466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1794754_1795507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1795625_1797026_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1797049_1797448_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1797623_1797824_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1797962_1798691_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1798824_1800240_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1800243_1801107_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1801119_1801869_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1802111_1804067_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1804048_1804717_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1805491_1806442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1806590_1806929_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1806986_1807148_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1807179_1807380_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1807645_1810219_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1810289_1812839_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1815389_1815878_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1815969_1817121_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1817174_1817996_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1818034_1819264_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1819392_1819833_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1819943_1820894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1820890_1821364_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1821525_1822464_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1822465_1823674_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1823778_1824285_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1824287_1827149_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1827138_1828104_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1828163_1830158_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1830256_1831207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1883505	1952917	4128979	transposase,tRNA,protease	Klosneuvirus(22.22%)	60	NA	NA
WP_005013747.1|1883505_1884456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1884580_1885390_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1885590_1886541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1887814_1889032_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1890088_1890991_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1891067_1891940_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1892070_1892439_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1892496_1893543_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1893738_1894995_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1894999_1896337_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1896486_1897443_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1897545_1898478_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1898593_1898914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1898906_1899266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1899313_1900888_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1900940_1901885_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1901902_1902733_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1902725_1904360_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1904356_1905712_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1906618_1908196_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1908199_1909474_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1909571_1909946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1911661_1912795_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1912832_1913438_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1913434_1914253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1914324_1916949_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1916935_1917190_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1917256_1917838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1918141_1918402_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1918567_1919191_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1919190_1919964_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1919960_1921169_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1921194_1921668_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1921741_1922692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1922790_1924140_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1924905_1925661_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1925753_1928636_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1928958_1929384_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1929411_1930560_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1930556_1931063_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1931078_1932365_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1932414_1933710_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1933711_1934350_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1934355_1935513_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1935539_1936895_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1936898_1937969_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1938107_1938344_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1938431_1939538_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1939503_1940808_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1940826_1941726_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1941909_1943067_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1943143_1944439_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1944552_1945092_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1945369_1945582_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1945601_1947632_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1947657_1947852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1948317_1950600_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1951009_1951309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1951593_1952007_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1951966_1952917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	1964121	2024914	4128979	transposase	Klosneuvirus(16.67%)	58	NA	NA
WP_005012067.1|1964121_1965072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1965068_1966343_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1966446_1967640_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1967636_1968290_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1968286_1969723_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1969710_1970070_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_154585107.1|1970816_1970978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1971988_1973854_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1974111_1975632_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1975719_1976370_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1977318_1978614_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1978635_1979520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1979618_1980494_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1980483_1980840_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1980970_1981945_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1982074_1982254_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1982351_1982876_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1982886_1983723_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1983835_1984207_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1984203_1984755_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1984770_1986462_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1986510_1987191_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1987438_1987903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1988072_1989002_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1989014_1989662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1989735_1991553_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1991636_1992587_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1993239_1994190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1994208_1994556_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1994584_1996024_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1996042_1996438_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1996612_1997221_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1997233_1998052_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1998003_1998978_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1999006_2000068_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2000064_2002281_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2002294_2002753_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2002910_2003255_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2003411_2004317_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2004403_2005417_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2007396_2008413_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2008555_2009908_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2010082_2010379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2011516_2012467_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879627.1|2012952_2013129_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2013813_2014785_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2014788_2015643_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2015661_2016483_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2016514_2017309_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2017357_2017963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2017920_2018754_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2019039_2020545_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2020586_2021369_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2021438_2021885_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2021881_2023108_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2023100_2023505_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2023664_2023967_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_010930742.1|2023963_2024914_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	2709571	2750240	4128979	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2709571_2710522_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2710632_2710815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2710914_2711511_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2711694_2712786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2713285_2713696_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2713754_2714084_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2714101_2716519_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2716531_2717554_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2717628_2717988_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2718003_2718201_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2718536_2719487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2719681_2720131_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2720127_2721078_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2721188_2722637_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2722751_2722997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2723136_2724087_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2724331_2725045_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2725167_2725395_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2725689_2726328_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2726436_2727471_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2727467_2728418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2728833_2729358_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2729361_2729631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2729829_2730891_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2730974_2732609_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2732610_2733414_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2733442_2734402_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2734405_2735920_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2735956_2736961_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2737392_2737863_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2737898_2738510_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2738540_2739164_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2739244_2740777_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2740811_2742029_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2742096_2743128_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2743124_2744294_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2744287_2744968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2745129_2745972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2746134_2747106_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2747277_2748156_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2748178_2749249_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2749289_2750240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	2775338	2831303	4128979	transposase,tRNA	Bacillus_virus(20.0%)	42	NA	NA
WP_010931070.1|2775338_2776289_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2776704_2779341_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2779337_2780462_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2780458_2781841_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005013747.1|2781892_2782843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810957.1|2783025_2783493_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2783614_2784283_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_010931045.1|2784355_2785558_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2785559_2787290_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2787407_2787716_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2787728_2788541_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2789421_2791587_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2791712_2792501_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2792540_2794145_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2794225_2794966_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2794973_2795468_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2795840_2796860_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2796856_2798239_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2798271_2799132_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2800135_2801017_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2801075_2801513_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2801603_2802575_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2802613_2803558_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2803653_2804463_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2804539_2804914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2805020_2805713_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2805705_2806122_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2806232_2806865_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2806893_2807337_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2807358_2808450_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2808504_2809305_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2809440_2810061_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2810200_2810674_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2811813_2812764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2812760_2820422_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2820662_2824709_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2825021_2825603_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2825599_2826898_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2826977_2828006_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2828266_2829217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2829213_2830164_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2830352_2831303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	2836585	2893743	4128979	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
WP_010929591.1|2836585_2837536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2838697_2839204_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2839200_2839965_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2839980_2840265_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2840329_2841319_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2841490_2842420_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2842391_2843078_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2843111_2843657_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2843701_2844967_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2844963_2845866_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2847047_2847992_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2848086_2849604_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2849645_2851274_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2851381_2852263_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2855375_2855750_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2855774_2856113_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2856156_2857791_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2857829_2859176_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2859283_2860705_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2860774_2861359_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2861461_2862412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2862546_2863653_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2863663_2864761_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2864905_2866111_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2866117_2866639_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2866635_2867118_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2867123_2867375_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2867355_2867841_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2867976_2871438_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2871455_2872340_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2872349_2872781_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2873027_2873531_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2873608_2875009_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2875083_2875959_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2875955_2876963_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2877430_2877736_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2877826_2878417_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930320.1|2878607_2879624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2879815_2882152_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2882234_2882669_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010929956.1|2882767_2883718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2883816_2884767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2884763_2885558_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2885589_2886294_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2886368_2887169_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2887165_2887573_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2887569_2888211_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2888203_2890204_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2891464_2892796_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2892792_2893743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	2908219	2972821	4128979	transposase,protease	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
WP_005015810.1|2908219_2909170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2909500_2913322_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2913478_2914147_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2914151_2915825_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2915843_2917163_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2917167_2919483_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2919538_2921707_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2921703_2926884_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2926982_2927297_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2927524_2927770_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2927864_2928383_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2928482_2929688_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2929803_2931201_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2931317_2931896_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2931968_2933360_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2933527_2934478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2934758_2935379_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2935375_2935789_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2935785_2936829_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2936884_2937073_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2937082_2937847_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2937937_2938594_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2938685_2939444_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2939469_2941071_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2941271_2942276_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2942376_2942640_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2942757_2943534_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2944124_2945075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2947458_2948571_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2948627_2949578_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2949786_2950008_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2950221_2951628_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2951624_2952929_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2952925_2954113_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2954329_2954782_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2954784_2955249_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2955328_2957008_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2957112_2958090_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2958169_2959138_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2959158_2960532_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2960528_2961365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2961481_2961937_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2961952_2962225_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2962317_2962641_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2962688_2963069_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2963288_2964086_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2964242_2966105_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2966154_2967066_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2967070_2967337_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2967423_2968254_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2968428_2969394_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2969564_2970575_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2970722_2971874_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_005012067.1|2971870_2972821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	2979964	3035244	4128979	transposase	Planktothrix_phage(16.67%)	49	NA	NA
WP_010929591.1|2979964_2980915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2981035_2981932_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2984209_2986435_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2986599_2987688_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2987644_2988298_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2988345_2989143_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2989674_2990625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2990705_2991854_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2991910_2992861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2992959_2993265_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2993293_2993728_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2993729_2994974_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2994970_2995681_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2995695_2996607_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2996969_2997374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2997370_2997829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2997835_2998744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2998740_2999607_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2999593_3000421_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3000431_3001559_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3002636_3003875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3003916_3005179_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3005185_3005938_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3005989_3006175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3006450_3006915_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3006946_3007606_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3007750_3009859_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|3009855_3010806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3010909_3011530_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3011633_3012374_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3013508_3014633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3014678_3015047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3015288_3016239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3017274_3017817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3018202_3019153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3019251_3020202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3020198_3021107_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3021233_3022070_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3022582_3023692_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3023753_3024704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3024896_3025679_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3025692_3026457_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3026469_3027816_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3027841_3028771_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3028886_3029792_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3029809_3031009_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3031081_3031774_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3031822_3034249_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3034293_3035244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	3147318	3211152	4128979	transposase,tRNA,protease	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005015810.1|3147318_3148269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3148414_3149539_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3149744_3150308_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3151302_3151785_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3151942_3153190_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3153409_3154066_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3154101_3155331_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010929591.1|3155598_3156549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3156640_3158056_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3158061_3159198_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3159267_3159639_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3159726_3160473_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3160509_3161574_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3161762_3162155_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3162164_3162593_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3162888_3163986_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3164327_3165692_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3165750_3166302_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3166315_3166990_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3168246_3169056_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3169058_3169895_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3169909_3170602_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3170613_3171003_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3171108_3172497_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3172613_3174110_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3174406_3175081_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3175179_3176130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3176126_3178586_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_033446281.1|3178721_3180128_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3180131_3181319_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3181387_3181897_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3182098_3182551_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3183112_3186175_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3186480_3189408_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3189429_3190626_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3190943_3191471_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_023853329.1|3191624_3192185_+	YggT family protein	NA	NA	NA	NA	NA
WP_023853325.1|3192192_3193647_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3193666_3194794_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_019248818.1|3194923_3196099_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3196076_3196316_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3196596_3197100_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3197272_3198214_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3198225_3199323_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3200288_3201635_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3201644_3202094_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3202183_3202618_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3202696_3203245_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3203327_3204698_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3204708_3205302_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3205373_3207257_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3207294_3208194_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3208190_3209054_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3209152_3210103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3210201_3211152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	3404679	3458420	4128979	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3404679_3405630_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3406034_3406679_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3406703_3407288_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3407388_3408006_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3408008_3409724_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3409720_3410029_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3410045_3410663_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3410707_3411010_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3411110_3411965_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3412152_3412377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3412546_3412819_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3413236_3413644_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3414013_3414808_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3414908_3416144_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3416212_3417229_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3417240_3418617_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3418613_3419810_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3419806_3421345_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3421341_3422601_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3424541_3425492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3426258_3427353_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3427345_3428680_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3428633_3429317_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3429342_3430506_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3430502_3431504_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3431503_3432376_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3432372_3433122_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3433118_3433910_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3433906_3435046_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3435321_3436107_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3436140_3436923_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3436926_3437316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3438455_3439319_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3439354_3440443_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3440439_3441390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3441743_3444722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3445648_3446527_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3448475_3449426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3449422_3449890_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3449932_3450703_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3450723_3451524_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3451534_3452944_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3453038_3453824_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3454063_3455080_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3455187_3455580_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3455717_3456398_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3456402_3457374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3457469_3458420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	3464574	3523874	4128979	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3464574_3466338_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3466449_3467328_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3467440_3468256_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3468259_3468511_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3468595_3469612_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3469942_3470164_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3472524_3473442_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3473939_3475148_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3475227_3476799_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3476916_3477852_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3478040_3478985_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3479552_3485270_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3485275_3486403_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3486458_3487085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3487356_3488373_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3488468_3489179_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3489175_3490165_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3490260_3491892_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3491894_3492632_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3492787_3493660_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3494009_3495149_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3495145_3495805_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3495876_3496509_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3496538_3497057_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3497067_3498177_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3498223_3499078_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3499079_3499982_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3501204_3502155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3503911_3504901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3505076_3505865_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3505861_3506893_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3506911_3507475_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3507530_3509051_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3509314_3510019_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3510026_3510755_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3510869_3511244_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3511286_3512576_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3512572_3513742_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3513738_3514578_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_050846623.1|3514637_3515573_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3515585_3516536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3516634_3517597_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3517628_3517988_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3518112_3519015_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3519016_3520789_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3520823_3521600_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3522923_3523874_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016338	Bordetella pertussis strain B202 chromosome, complete genome	4128979	3538812	3607961	4128979	transposase,tRNA	Planktothrix_phage(10.0%)	56	NA	NA
WP_005012808.1|3538812_3539763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3539891_3541025_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3541068_3541974_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3541976_3543677_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3543673_3544594_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3544601_3545579_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3545637_3546672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3548646_3548883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3549009_3549873_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3549961_3550783_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3550862_3551600_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3551596_3552589_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3552741_3553365_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3553409_3554558_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3556881_3557832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3559217_3560168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3560464_3560962_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931404.1|3562792_3563659_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3563665_3564400_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3565569_3566364_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3566653_3567244_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3567277_3568606_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3568680_3569826_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3569937_3570936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3570898_3571333_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3572849_3573734_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3573730_3574936_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3574932_3575793_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3575905_3577696_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3577736_3578381_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3578402_3578711_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3578876_3580163_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3581596_3582547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3584498_3585713_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3585818_3586808_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3586804_3587413_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3587425_3588055_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3588051_3588672_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3588703_3589495_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3590346_3590802_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3590820_3591747_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3591800_3593087_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3594017_3594890_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3594886_3595837_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3595935_3596886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3596990_3597221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3597347_3597737_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3597753_3600135_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3600127_3601504_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3601519_3602515_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3602533_3603526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3603766_3604327_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3604331_3604658_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3604694_3605507_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3605517_3606600_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3606686_3607961_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
