assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001686985.1_ASM168698v1	NZ_CP015318	Mesorhizobium amorphae CCNWGS0123 chromosome, complete genome	1	1314160-1314250	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,RT,cas3	Orphan	GCAATTCCAGGAAAAGTGTGAAGCGGTTTTCC	32	1	13	1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218|1314192-1314218	NZ_CP015318.1_4624921-4624895|NZ_CP015318.1_1106067-1106093|NZ_CP015318.1_3106133-3106107|NZ_CP015318.1_98419-98445|NZ_CP015318.1_182525-182551|NZ_CP015318.1_362576-362602|NZ_CP015318.1_401243-401269|NZ_CP015318.1_972254-972280|NZ_CP015318.1_1242838-1242864|NZ_CP015318.1_1354168-1354194|NZ_CP015318.1_5044091-5044117|NZ_CP015318.1_5124859-5124885|NZ_CP015318.1_6102329-6102355	NA	1	1	Orphan	WYL,csa3,DEDDh,RT,cas3	NA,NA	NA|790aa|up_9|NZ_CP015318.1_1296858_1299228_-	cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like	NA|350aa|up_8|NZ_CP015318.1_1299276_1300326_-	COG0274, DeoC, Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]	NA|276aa|up_7|NZ_CP015318.1_1300478_1301306_-	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin	NA|691aa|up_6|NZ_CP015318.1_1301516_1303589_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|581aa|up_5|NZ_CP015318.1_1303590_1305333_+	COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|824aa|up_4|NZ_CP015318.1_1305514_1307986_-	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|856aa|up_3|NZ_CP015318.1_1308147_1310715_-	COG4249, COG4249, Uncharacterized protein containing caspase domain [General function prediction only]	NA|190aa|up_2|NZ_CP015318.1_1310854_1311424_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|461aa|up_1|NZ_CP015318.1_1311625_1313008_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|325aa|up_0|NZ_CP015318.1_1313083_1314058_-	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs	NA|151aa|down_0|NZ_CP015318.1_1314304_1314757_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|89aa|down_1|NZ_CP015318.1_1315087_1315354_-	pfam15572, Imm45, Immunity protein 45	NA|334aa|down_2|NZ_CP015318.1_1315467_1316469_-	COG2055, COG2055, Malate/L-lactate dehydrogenases [Energy production and conversion]	NA|270aa|down_3|NZ_CP015318.1_1316559_1317369_-	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]	NA|222aa|down_4|NZ_CP015318.1_1317368_1318034_-	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism]	NA|266aa|down_5|NZ_CP015318.1_1318249_1319047_-	cd13701, PBP2_ml15202_like, Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold	NA|271aa|down_6|NZ_CP015318.1_1319104_1319917_-	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]	NA|283aa|down_7|NZ_CP015318.1_1320139_1320988_+	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]	NA|527aa|down_8|NZ_CP015318.1_1320984_1322565_+	PRK07524, PRK07524, 5-guanidino-2-oxopentanoate decarboxylase	NA|236aa|down_9|NZ_CP015318.1_1322740_1323448_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG
GCF_001686985.1_ASM168698v1	NZ_CP015318	Mesorhizobium amorphae CCNWGS0123 chromosome, complete genome	2	3088672-3088977	1	CRT	no		WYL,csa3,DEDDh,RT,cas3	Orphan	CTTGCCNTGNGCCTGCTC	18	2	2	3088690-3088707|3088942-3088959	NZ_CP015322.1_81909-81926|NZ_CP015318.1_1797976-1797959	NA	8	8	Orphan	WYL,csa3,DEDDh,RT,cas3	NA|79aa|up_3|NZ_CP015318.1_3083800_3084037_+,NA|74aa|down_1|NZ_CP015318.1_3089862_3090084_+,NA|104aa|down_3|NZ_CP015318.1_3091337_3091649_+,NA|72aa|down_6|NZ_CP015318.1_3092688_3092904_+,NA|117aa|down_8|NZ_CP015318.1_3093680_3094031_-	NA|153aa|up_9|NZ_CP015318.1_3076311_3076770_+	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|215aa|up_8|NZ_CP015318.1_3077923_3078568_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|483aa|up_7|NZ_CP015318.1_3078564_3080013_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|356aa|up_6|NZ_CP015318.1_3080474_3081542_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|148aa|up_5|NZ_CP015318.1_3081724_3082168_-	cd08895, SRPBCC_CalC_Aha1-like_2, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|416aa|up_4|NZ_CP015318.1_3082266_3083514_-	PRK03858, PRK03858, DNA polymerase IV; Validated	NA|79aa|up_3|NZ_CP015318.1_3083800_3084037_+	NA	NA|137aa|up_2|NZ_CP015318.1_3085552_3085963_+	pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I	NA|91aa|up_1|NZ_CP015318.1_3086074_3086347_-	pfam11089, SyrA, Exopolysaccharide production repressor	NA|341aa|up_0|NZ_CP015318.1_3086816_3087839_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|100aa|down_0|NZ_CP015318.1_3089355_3089655_+	pfam06823, DUF1236, Protein of unknown function (DUF1236)	NA|74aa|down_1|NZ_CP015318.1_3089862_3090084_+	NA	NA|329aa|down_2|NZ_CP015318.1_3090182_3091169_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|104aa|down_3|NZ_CP015318.1_3091337_3091649_+	NA	NA|108aa|down_4|NZ_CP015318.1_3091663_3091987_-	pfam06169, DUF982, Protein of unknown function (DUF982)	NA|109aa|down_5|NZ_CP015318.1_3092291_3092618_+	pfam06823, DUF1236, Protein of unknown function (DUF1236)	NA|72aa|down_6|NZ_CP015318.1_3092688_3092904_+	NA	NA|80aa|down_7|NZ_CP015318.1_3093016_3093256_+	pfam11154, DUF2934, Protein of unknown function (DUF2934)	NA|117aa|down_8|NZ_CP015318.1_3093680_3094031_-	NA	NA|203aa|down_9|NZ_CP015318.1_3094300_3094909_+	pfam07615, Ykof, YKOF-related Family
GCF_001686985.1_ASM168698v1	NZ_CP015318	Mesorhizobium amorphae CCNWGS0123 chromosome, complete genome	3	3762050-3762132	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,RT,cas3	Orphan	CAGCAAAAGTGGTTTCCGGTTTTGCG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,RT,cas3	NA,NA|85aa|down_4|NZ_CP015318.1_3769045_3769300_+,NA|135aa|down_8|NZ_CP015318.1_3775390_3775795_-	NA|248aa|up_9|NZ_CP015318.1_3747850_3748594_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|479aa|up_8|NZ_CP015318.1_3748590_3750027_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|393aa|up_7|NZ_CP015318.1_3750308_3751487_+	TIGR02993, ectoine_eutD, ectoine utilization protein EutD	NA|415aa|up_6|NZ_CP015318.1_3751473_3752718_+	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|431aa|up_5|NZ_CP015318.1_3752736_3754029_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|388aa|up_4|NZ_CP015318.1_3754326_3755490_-	TIGR04371, conserved_hypothetical_protein, putative sugar O-methyltransferase	NA|156aa|up_3|NZ_CP015318.1_3756064_3756532_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|1129aa|up_2|NZ_CP015318.1_3756628_3760015_+	pfam13502, AsmA_2, AsmA-like C-terminal region	NA|179aa|up_1|NZ_CP015318.1_3760051_3760588_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|418aa|up_0|NZ_CP015318.1_3760720_3761974_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|548aa|down_0|NZ_CP015318.1_3762274_3763918_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|267aa|down_1|NZ_CP015318.1_3763977_3764778_+	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily	NA|365aa|down_2|NZ_CP015318.1_3765037_3766132_+	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)	NA|824aa|down_3|NZ_CP015318.1_3766213_3768685_+	cd07302, CHD, cyclase homology domain	NA|85aa|down_4|NZ_CP015318.1_3769045_3769300_+	NA	NA|294aa|down_5|NZ_CP015318.1_3769674_3770556_+	COG4254, COG4254, Uncharacterized protein conserved in bacteria [Function unknown]	NA|735aa|down_6|NZ_CP015318.1_3770724_3772929_-	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria	NA|580aa|down_7|NZ_CP015318.1_3773283_3775023_-	COG5616, COG5616, Predicted integral membrane protein [Function unknown]	NA|135aa|down_8|NZ_CP015318.1_3775390_3775795_-	NA	NA|420aa|down_9|NZ_CP015318.1_3775843_3777103_-	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family
GCF_001686985.1_ASM168698v1	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	1	710340-710421	1	CRISPRCasFinder	no			Orphan	TCCATCTGGTAAGCCGCCGGGATGGCGG	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,RT,cas3	NA,NA|56aa|down_3|NZ_CP015322.1_716716_716884_-	NA|53aa|up_9|NZ_CP015322.1_698892_699051_+	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]	NA|61aa|up_8|NZ_CP015322.1_699431_699614_+	pfam16861, Carbam_trans_C, Carbamoyltransferase C-terminus	NA|186aa|up_7|NZ_CP015322.1_699529_700087_+	pfam16861, Carbam_trans_C, Carbamoyltransferase C-terminus	NA|165aa|up_6|NZ_CP015322.1_700576_701071_+	NF033203, entero_EhxA, enterohemolysin EhxA	NA|145aa|up_5|NZ_CP015322.1_702763_703198_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|251aa|up_4|NZ_CP015322.1_703303_704056_+	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism]	NA|587aa|up_3|NZ_CP015322.1_704120_705881_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|437aa|up_2|NZ_CP015322.1_705877_707188_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|273aa|up_1|NZ_CP015322.1_707634_708453_-	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|521aa|up_0|NZ_CP015322.1_708593_710156_-	cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B	NA|269aa|down_0|NZ_CP015322.1_711891_712698_+	pfam04199, Cyclase, Putative cyclase	NA|105aa|down_1|NZ_CP015322.1_713013_713328_+	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional	NA|631aa|down_2|NZ_CP015322.1_714847_716740_+	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	NA|56aa|down_3|NZ_CP015322.1_716716_716884_-	NA	NA|401aa|down_4|NZ_CP015322.1_718826_720029_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|430aa|down_5|NZ_CP015322.1_720122_721412_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|103aa|down_6|NZ_CP015322.1_721413_721722_+	pfam13459, Fer4_15, 4Fe-4S single cluster domain	NA|282aa|down_7|NZ_CP015322.1_721708_722554_+	cd08944, SDR_c12, classical (c) SDR, subgroup 12	NA|448aa|down_8|NZ_CP015322.1_722563_723907_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|333aa|down_9|NZ_CP015322.1_724054_725053_+	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase
