The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	19577	87402	4113052	tRNA,transposase	Bacillus_phage(22.22%)	60	NA	NA
WP_010929591.1|19577_20528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068973.1|20514_20694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|20734_21211_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|21292_21976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|22000_23608_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|23656_24286_-	LysE family transporter	NA	NA	NA	NA	NA
WP_029443820.1|24319_25702_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_003815889.1|26032_26662_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|26639_27542_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|28985_29936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|30494_32057_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|32053_32689_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|32917_33940_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|34105_34882_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|35045_35744_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|35755_37066_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|37121_37799_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|37795_39193_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|39298_39760_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929651.1|39843_41064_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929650.1|41115_41991_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|42092_42524_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|42548_43277_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|43273_44254_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|45020_45803_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446330.1|45969_46893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|46964_47723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|47741_48185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|48205_49018_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|49023_49956_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|49939_51163_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|51250_52033_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|52085_56048_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|56794_58303_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_153302766.1|58591_58735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|58721_59672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|60938_61817_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|61844_62147_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|62239_63679_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|63677_64325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|64751_66452_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|66542_67796_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|68689_69079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929637.1|69075_70086_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|70922_71756_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|71752_72658_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|72756_73707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|73807_74629_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|74734_75775_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|75817_77110_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|77120_77996_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|77992_78793_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|78868_79885_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|80167_80485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|80575_80923_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|81210_82893_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|82902_83586_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|83647_84277_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|84358_85552_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|86451_87402_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	115225	151166	4113052	transposase	Sphingobium_phage(33.33%)	33	NA	NA
WP_041166334.1|115225_116170_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|116244_117195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|117191_118601_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_076879597.1|118799_119549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807805.1|119550_119802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|119890_120472_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|120503_121124_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|121285_123193_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|124385_124700_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|124793_125744_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|126165_127347_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|127976_129248_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|129282_130341_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019248465.1|130444_130762_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|130774_131356_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929598.1|131550_132387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929597.1|132810_133752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929596.1|133935_134355_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|134354_135581_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_005012808.1|136381_137332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929594.1|137425_138325_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|138404_139166_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|139162_139852_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|139876_140467_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|140472_141207_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_029443813.1|142438_143695_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929591.1|143737_144688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|144823_145438_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|145434_146682_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003815255.1|147851_148745_-	membrane protein	NA	NA	NA	NA	NA
WP_003815265.1|148872_149109_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815267.1|149080_149716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|150215_151166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	205495	272658	4113052	tRNA,transposase	Planktothrix_phage(37.5%)	59	NA	NA
WP_010931687.1|205495_206848_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_003816050.1|206964_208551_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931686.1|208570_209545_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931685.1|209541_210462_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931684.1|210488_211490_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	8.9e-15
WP_019248556.1|211486_212503_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_019248557.1|212560_213760_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003816037.1|213889_214813_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931682.1|214856_215900_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931681.1|215901_216717_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.4	6.1e-30
WP_010927255.1|216713_217595_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929556.1|217655_219104_-	catalase	NA	A0A2K9L0T1	Tupanvirus	40.8	3.2e-106
WP_153302799.1|219087_219240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|219226_220177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853477.1|220723_221962_-	CoA transferase	NA	NA	NA	NA	NA
WP_003819309.1|222043_222823_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931679.1|222819_223827_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003808010.1|224000_224687_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853488.1|224767_225529_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_010931677.1|225525_226350_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931676.1|226351_227320_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931675.1|227342_228755_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931674.1|228794_229949_-	CoA transferase	NA	NA	NA	NA	NA
WP_077274100.1|229938_230961_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930363.1|230849_231800_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996063.1|231786_231963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815086.1|231982_232756_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003815084.1|232845_233655_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931673.1|233665_234742_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_010931672.1|238593_239241_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010927126.1|239452_240361_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003815073.1|240357_241029_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_003815070.1|241347_242364_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815068.1|242483_243674_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815066.1|243675_244776_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815064.1|244830_245571_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_010931671.1|245691_246714_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815061.1|246713_247181_+	membrane protein	NA	NA	NA	NA	NA
WP_019249116.1|247199_248726_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_010931669.1|248712_250170_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_003815055.1|250267_250456_+	DUF3460 family protein	NA	NA	NA	NA	NA
WP_003815053.1|250482_251370_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815051.1|251414_252257_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815049.1|252354_252702_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815047.1|252784_253528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820519.1|253768_254608_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_019247320.1|254610_255261_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003815038.1|255293_256055_+	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931666.1|256235_257486_+	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010931665.1|257482_260551_+	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003815032.1|260547_263655_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_023994937.1|263651_265145_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010929577.1|265141_266092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|266190_267141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|267239_268190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815027.1|268290_269253_-	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010931663.1|269245_270112_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_010931662.1|270311_271538_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931661.1|271707_272658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	457469	531813	4113052	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|457469_458420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|458416_459607_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|459728_460493_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|460579_461683_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|461874_462891_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|463172_463661_+	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|465004_465685_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|465746_466598_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817654.1|466594_467470_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|467495_468389_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|468400_470290_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|470626_474400_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|474396_475347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302770.1|475333_475501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|475655_476348_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|476721_477222_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|477328_478249_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|478265_478742_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|478835_480686_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|480741_481500_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|481527_483000_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|483034_483814_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|483826_484660_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815975.1|484668_485442_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|485438_486503_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|486654_489282_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|489345_491967_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|492894_493353_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|493631_495875_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|496071_498096_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|498219_499182_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|499393_500533_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|500555_501521_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|501716_502907_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|502920_503166_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|503194_505216_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|505262_506870_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|506970_508140_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|511021_511972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|511995_513054_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|513128_513503_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|514057_515008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995443.1|514994_515135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929833.1|516564_517410_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|517497_518661_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|519079_520051_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|520089_521517_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|521636_522428_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|522546_525000_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_003816023.1|525094_526210_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929554.1|526206_527616_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|528021_528156_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|528251_528623_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|528619_528892_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|528940_530632_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|530862_531813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	835044	896234	4113052	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|835044_835995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|836470_837361_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|837357_838179_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|838377_838869_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|838887_839961_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|840007_841111_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|841186_841807_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|841827_842337_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|842391_842643_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|842706_843840_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|843847_844234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|844230_846750_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|847178_847517_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|847513_848020_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|848081_848882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|848992_849934_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|850027_851563_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|853242_855093_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|855096_855930_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|855929_856871_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|857122_858118_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|858235_860524_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|860830_861739_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|861793_862759_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|862833_864495_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|864491_865277_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|865425_866376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|867074_867458_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|867515_868118_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|868135_868537_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|868670_869564_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|869560_870142_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|870936_871671_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|871711_872761_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|872908_873487_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|873873_874851_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|874944_879339_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|879539_880388_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|880546_881359_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|881414_882365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|882351_882516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|882463_883264_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|883325_883709_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|883720_885154_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|885360_885690_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|885692_886361_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|886624_887545_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|887591_887804_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|887826_888249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|888265_889366_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|889462_890980_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|891055_891895_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|891916_892798_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|892879_893974_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|894267_895218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|895292_896234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	901552	947749	4113052	tRNA,tail,transposase,terminase	uncultured_Caudovirales_phage(17.39%)	52	NA	NA
WP_003814219.1|901552_902584_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|902624_902864_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|902933_904523_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|904522_905071_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|905151_905724_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|905742_906654_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|906727_907696_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|907818_908892_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|908896_910717_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|910793_911744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|911832_912168_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|912301_912952_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|912973_914392_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|914461_915217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|915185_915944_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|915954_916836_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|916852_917560_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|917562_918321_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|918530_920273_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|920265_920790_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|920829_921624_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|921791_922865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|922963_923914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|924165_924378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|924443_925055_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|925534_925855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|925847_926546_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|926560_926782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|926799_927750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|928425_928875_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|928861_930139_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|930141_931560_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|931588_932644_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|932649_932892_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|933014_933617_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|934045_934996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|935013_935661_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|935670_935922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|935984_936467_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|936468_936669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|936668_937064_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|937060_937459_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|937455_937878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|937885_938386_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|938640_939159_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|939168_939498_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|939515_939806_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|939831_942444_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|942453_942813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|942880_943414_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|943410_943800_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|943792_947749_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	953915	1007845	4113052	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|953915_955646_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|955698_956127_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|956129_956810_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|956809_957268_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|957304_958279_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|958295_959612_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|959643_960141_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|960227_960917_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|960916_961966_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|961962_962757_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|962925_963276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|963251_963809_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|964733_964952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057045090.1|964938_965889_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|968167_969256_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|969258_970701_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|970805_971951_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|971982_972780_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|972804_974364_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|974360_976733_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|976842_977946_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|977945_978638_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|978781_979483_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|979467_979845_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|980576_981527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|981513_981657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|981686_982559_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|982899_983118_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|983157_984537_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|984578_985976_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|986015_987668_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|987671_988556_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|988555_989497_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|989575_991195_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|991361_992177_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|992244_992814_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|992814_993765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|994419_995517_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|995550_996816_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|996973_997924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|998167_998758_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|998773_1001218_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|1001337_1002309_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|1002440_1002965_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|1002924_1003875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|1004096_1006292_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|1006364_1006772_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|1006719_1006908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1006894_1007845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	1130434	1198410	4113052	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|1130434_1131451_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|1131647_1132631_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|1134229_1135618_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|1135648_1136638_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|1136748_1137981_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|1138262_1139063_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|1139085_1141317_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|1142104_1142551_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|1142572_1143319_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|1143462_1144440_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|1145073_1145685_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|1145678_1146896_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|1147036_1147987_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|1147983_1148703_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|1148823_1150983_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|1151073_1151343_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|1151431_1151638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|1151636_1152164_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|1152182_1152962_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|1153129_1154146_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|1154218_1154710_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|1154720_1156436_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|1157599_1158550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|1158546_1160397_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|1160777_1161437_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|1161524_1161677_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|1161785_1161953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|1161964_1162645_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|1162926_1163643_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|1163657_1164959_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|1167103_1169992_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|1170215_1171568_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|1171596_1172118_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|1172114_1173569_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|1173603_1173852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|1173957_1174833_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|1174858_1175914_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|1175926_1176718_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|1176750_1178121_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|1179173_1179311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1179297_1180248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|1180300_1180522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|1180681_1180894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|1181013_1182132_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|1182228_1182444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|1182637_1182889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|1183001_1183952_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|1183948_1184332_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|1184386_1186204_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|1186350_1187178_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|1187223_1188204_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|1188200_1188413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|1188409_1189591_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|1189754_1190489_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|1190490_1193103_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|1193238_1195152_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|1195767_1196178_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|1196275_1197361_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|1197459_1198410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	1221588	1291860	4113052	transposase	Streptococcus_phage(14.29%)	56	NA	NA
WP_005012067.1|1221588_1222539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|1222619_1223531_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|1223591_1224737_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|1224756_1225671_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|1225742_1226492_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|1226491_1227421_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|1227664_1229491_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|1229573_1230215_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|1230404_1231439_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|1233275_1234340_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|1235137_1236046_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|1237533_1238808_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|1238961_1239342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|1239349_1240222_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|1240527_1240908_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|1241118_1241844_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1241939_1242890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1242994_1244044_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1244181_1245198_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1246706_1247279_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1247338_1248070_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1248121_1249039_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1249846_1253026_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1253022_1254405_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1254474_1254726_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1254871_1255522_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1255672_1257787_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1257862_1258714_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1258710_1259337_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1259333_1261088_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1261380_1264086_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1264098_1265760_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1265772_1267563_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1267784_1268960_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1269002_1269953_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1270051_1270792_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1270986_1273023_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1273040_1274051_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1274168_1275362_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1275391_1276165_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1276161_1277352_-	acetate kinase	NA	NA	NA	NA	NA
WP_010930136.1|1278317_1280666_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1280820_1281528_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1281565_1282699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1282791_1282944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1282975_1283524_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1283542_1284028_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1284205_1285144_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1285146_1285464_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1285509_1286454_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1288134_1288785_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1288838_1289174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1289170_1290031_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1290047_1290329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1290402_1290666_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1290909_1291860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	1304078	1361460	4113052	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1304078_1305095_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1305925_1306933_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1306929_1308573_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1308569_1309472_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1309597_1310071_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1310060_1311083_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1311079_1312507_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1313444_1314461_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1314793_1315729_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1315778_1317659_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1317725_1318070_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1318214_1319351_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1319347_1320421_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1320578_1322015_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1322105_1322747_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1323082_1324099_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1324431_1327179_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1327245_1328667_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1328930_1329647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1329731_1330049_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1330089_1330503_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1330504_1330864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1330906_1332451_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1332534_1333365_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1333399_1334554_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1334596_1335469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054604373.1|1335585_1337874_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1339080_1339545_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1339571_1340522_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1340889_1341666_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1341710_1342568_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1342589_1343606_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1343740_1344781_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1344975_1347057_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1347292_1348786_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1349016_1349811_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1350031_1351390_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1351386_1352229_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1352247_1354134_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1354371_1355004_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1355022_1355625_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1355628_1355790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1355776_1356727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1357529_1358330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1358373_1359360_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1359499_1360513_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1360509_1361460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	1396811	1462397	4113052	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1396811_1398608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1398607_1399576_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1399645_1400491_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1400558_1401113_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1401159_1402110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1402208_1402841_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1403007_1405290_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1405444_1408141_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1408266_1408755_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1411165_1414036_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1414081_1415296_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1415525_1416953_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1416993_1418142_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1418154_1418913_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1419000_1419903_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1419899_1420850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1420979_1421963_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1422017_1422740_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1424218_1425574_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1425654_1428030_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1428194_1430270_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1430331_1431132_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1431233_1432196_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1432183_1432939_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1433046_1434684_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1434751_1435489_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1435591_1436167_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1436339_1436876_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1436878_1437223_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1437238_1438084_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1438122_1439502_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1439579_1440461_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1440559_1441510_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1441506_1441917_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1442024_1442879_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1442871_1443834_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1443879_1445004_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1445115_1445988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1446112_1446892_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1447045_1448467_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1448901_1450599_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1450627_1450750_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1450825_1451767_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1452093_1452840_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1452847_1453774_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1453895_1454813_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1454852_1455806_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1455830_1456409_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1458082_1458691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1458768_1459122_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1459205_1460195_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1460397_1461348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1461446_1462397_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	1624962	1691462	4113052	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010929588.1|1624962_1625913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1625978_1626158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1626274_1626997_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1627016_1628162_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1629069_1630020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1630207_1631410_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1631406_1632165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1632558_1633191_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1634146_1636747_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1636734_1640154_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1640161_1641067_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1641205_1641784_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1641780_1642692_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1642705_1643386_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1643587_1645627_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1645645_1646632_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1646657_1647455_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1647451_1648645_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1648641_1649604_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1649621_1650662_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1650649_1651258_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1652846_1653842_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1653861_1655040_+	mandelate racemase	NA	NA	NA	NA	NA
WP_003811401.1|1655050_1655968_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1656023_1656974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1657072_1657843_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1657839_1658520_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1658586_1659375_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1659621_1660638_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1660943_1662098_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1666603_1667086_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1667103_1667394_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1667520_1668231_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1668414_1668822_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1668834_1669254_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1669301_1670006_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1670071_1671493_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1671531_1672296_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1672339_1673125_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1673124_1673814_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1673816_1674950_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1674967_1675990_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1676059_1677706_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1677739_1679272_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1679350_1681171_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1681291_1682911_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1683089_1684532_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1684748_1685765_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1685811_1686600_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1686622_1686892_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1686908_1687700_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1687711_1688053_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1688063_1688564_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1688556_1689567_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1689569_1690142_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1690511_1691462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	1719633	1758223	4113052	transposase,protease	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1719633_1720968_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1721020_1723357_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1723482_1724046_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1724054_1725146_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1725217_1725673_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1725673_1726468_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1726464_1727646_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1727632_1728238_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1728234_1729008_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1729019_1729847_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1730008_1732372_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1732439_1733159_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1733282_1733708_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1733742_1734693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1734810_1735737_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1735802_1736960_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1736940_1737408_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1737555_1738506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1738522_1738957_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1738946_1739297_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1739493_1740648_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1740644_1741817_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1741864_1742758_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1742803_1743241_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1743300_1743990_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1743999_1744950_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1745048_1745999_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1746097_1747081_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1747343_1748441_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1748451_1751694_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1752715_1753360_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1753370_1754270_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1754317_1755403_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1755399_1757094_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1757127_1757286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1757272_1758223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	2038568	2086583	4113052	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|2038568_2039519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2039617_2042218_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2042324_2043329_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2043437_2044778_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2044818_2045847_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2046042_2046588_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2046584_2047145_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2047243_2048194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2048231_2048819_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2048836_2049220_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2050579_2051872_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2052006_2053047_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2053144_2054161_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2054428_2055076_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2055201_2055960_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|2056034_2056724_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|2056741_2057626_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2057622_2058402_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|2058428_2059106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2059394_2060147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2060265_2061666_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2061689_2062088_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2062263_2062464_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2062602_2063331_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2063464_2064880_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2064883_2065747_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2065759_2066509_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2066691_2068707_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|2068688_2069237_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|2069313_2070033_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|2070131_2071082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2071180_2072131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2072279_2072618_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2072675_2072837_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2072868_2073069_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2073334_2075908_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|2075978_2078552_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2081078_2081567_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2081658_2082810_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2082863_2083685_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2083723_2084953_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2085081_2085522_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|2085466_2085646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2085632_2086583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	2148145	2207415	4113052	tRNA,transposase,protease	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|2148145_2149096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2149220_2150030_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|2150085_2150244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2150230_2151181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2152454_2153672_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2154728_2155631_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2155707_2156580_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2156710_2157079_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2157136_2158183_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2158378_2159635_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2159639_2160977_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2161126_2162083_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2162185_2163118_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2163233_2163554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|2163555_2163906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2163953_2165528_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2165580_2166525_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2166542_2167373_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2167365_2169000_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2168996_2170352_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2171258_2172836_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2172839_2174114_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2174211_2174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2176301_2177435_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2177472_2178078_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2178074_2178893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2178964_2181589_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2181575_2181830_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2181896_2182478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2182781_2183042_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2183207_2183831_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2183830_2184604_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2184600_2185809_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2185834_2186308_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2186381_2187332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2187430_2188381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2188479_2189829_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2190594_2191350_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2191442_2194325_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2194647_2195073_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2195100_2196249_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2196245_2196752_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2196758_2198054_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|2198094_2199399_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2199400_2200039_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2200041_2201202_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2201228_2202584_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2202587_2203658_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2203796_2204033_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2204120_2205227_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2205192_2206497_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2206515_2207415_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	2217655	2261978	4113052	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|2217655_2218606_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2218704_2219655_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|2219641_2219842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|2219854_2220940_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2220955_2221717_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|2221713_2222637_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|2222735_2223260_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2223268_2224012_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2224107_2224347_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2224360_2224513_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2224598_2226089_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2226180_2227119_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2227115_2227292_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2227294_2227957_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2229578_2229722_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2229718_2230693_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|2230729_2230873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2230859_2231810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2231806_2233081_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|2233178_2234378_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2234374_2235028_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2235024_2236461_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2236448_2236808_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2237780_2238731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2239776_2241642_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2241899_2243420_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2243507_2244158_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2245106_2246402_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2246423_2247308_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2247406_2248282_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2248271_2248628_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2248701_2249733_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2249862_2250042_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2250139_2250664_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2250674_2251511_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2251623_2251995_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2251991_2252543_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2252558_2254250_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2254298_2254979_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2255226_2255691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2255860_2256790_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2256802_2257450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2257523_2259341_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2259424_2260375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2260879_2261041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2261027_2261978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	2291751	2356120	4113052	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2291751_2292702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2292688_2292880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2292923_2293874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2293972_2294938_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2295075_2295975_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2298569_2300057_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2300067_2301264_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2301336_2302656_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2302652_2303528_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2303558_2304728_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2304724_2305039_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2305060_2305783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2305782_2306601_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2306605_2307133_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2307138_2308404_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2308753_2309893_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2309970_2310843_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_076879629.1|2311713_2312664_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2312623_2313259_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2313618_2314941_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2315169_2316081_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2317505_2318078_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2318117_2319947_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2319909_2320968_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2321005_2321467_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2321551_2322298_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2323788_2327019_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2327085_2328417_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2328669_2329044_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2329146_2330325_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2330335_2330926_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2331036_2331843_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2331868_2332663_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2333663_2334638_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2334796_2335309_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2335465_2336437_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2338181_2338988_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2338984_2340121_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2340236_2341001_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2341114_2341885_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2341969_2343181_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2343229_2343604_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2343704_2344967_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2344963_2345821_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2345993_2346995_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2347446_2348397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2349912_2351112_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2351480_2351717_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2351780_2351948_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2352061_2353957_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2354120_2355071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2355169_2356120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	2542588	2603936	4113052	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2542588_2543539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2543655_2544375_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2544547_2545534_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2545534_2546017_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2546020_2547304_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2547300_2548239_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2548235_2549945_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2549954_2551202_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2552812_2554102_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2555239_2556013_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2556674_2557418_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2557492_2558233_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2558428_2559265_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2559315_2560086_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2560135_2561188_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2561184_2561811_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2561807_2562854_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2563020_2564037_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2564135_2565086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2567826_2569116_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2569234_2569705_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2569715_2570924_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2571070_2571535_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2571558_2572509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2573493_2574267_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2574263_2575262_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2575346_2576123_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2576278_2577946_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2578263_2579388_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2579514_2580138_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2580134_2582036_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2582084_2582879_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2582891_2583893_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2583889_2584396_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2584388_2585237_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2585334_2585877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2585920_2586871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2587026_2587353_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2587349_2587634_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2587630_2588110_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2588106_2589735_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2589731_2590076_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2590075_2593009_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2594167_2595118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2595216_2595513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2595619_2596537_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2596541_2597255_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2597268_2598240_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2599959_2600340_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2600343_2601531_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2601969_2602692_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2602985_2603936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	2624727	2695881	4113052	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2624727_2625678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2626230_2627856_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2627905_2628940_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2628942_2630289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2630285_2631800_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2631790_2632801_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2633274_2634216_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2634224_2635193_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2636732_2637701_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2637878_2638868_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2638914_2639673_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2639862_2640600_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2640550_2640712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2640698_2641649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2641833_2642616_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2642609_2643311_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2643550_2644153_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2645337_2645493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2645479_2646430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2646426_2647983_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2647975_2648749_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2648807_2649758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2649839_2651015_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2651028_2653086_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2653082_2654108_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2654119_2655409_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2655431_2656529_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2656525_2657416_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2657412_2659497_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2659528_2660698_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2660739_2661480_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2661479_2662250_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930465.1|2663105_2663891_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2663917_2666002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2666169_2668125_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2668448_2668949_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2669047_2670574_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2670711_2671599_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2671613_2672567_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2672618_2674709_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2674724_2675111_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2677804_2678608_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2679901_2680804_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2680868_2681645_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2681966_2683016_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2683139_2684810_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2684814_2685609_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2685707_2686658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2686677_2687583_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2687660_2688359_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2688518_2689463_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2689472_2690963_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2690959_2692027_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2692090_2693503_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2693688_2694909_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2694930_2695881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	2780083	2831255	4113052	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2780083_2781034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2781132_2781903_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2781899_2782571_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2782567_2783209_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2783221_2784142_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2784302_2785463_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2785504_2786455_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2787053_2787278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2787442_2789137_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2789258_2789528_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2789643_2790042_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2790052_2791009_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2791145_2791691_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2791711_2793661_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2794048_2794825_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2794830_2795223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2795644_2796595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2796591_2797689_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2797720_2798671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2800452_2801694_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2801705_2802479_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2802505_2803456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2803554_2804337_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2804425_2805652_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2806377_2807763_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2807781_2808387_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2808383_2810240_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2810236_2811037_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2811051_2812245_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2812312_2813287_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2813409_2814633_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2814743_2816948_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2817242_2817902_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2817909_2818116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2818454_2819210_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2819225_2819387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2819480_2819996_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2820268_2820586_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2820773_2821022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2821300_2822656_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2822702_2824082_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2824144_2824777_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2824776_2827137_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2827178_2828138_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2828124_2828811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2828807_2829140_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2829255_2830206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2830304_2831255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	2929550	2970218	4113052	tRNA,transposase	Salmonella_phage(33.33%)	46	NA	NA
WP_010929591.1|2929550_2930501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2930611_2930794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2930893_2931490_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2931673_2932765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2933264_2933675_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2933733_2934075_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2934080_2936498_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2936510_2937533_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2937607_2937967_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2937982_2938180_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2938515_2939466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2939452_2939614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2939660_2940110_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2940106_2941057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|2941043_2941190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2941167_2942616_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2942730_2943012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2942964_2943129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2943115_2944066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2944310_2945024_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2945146_2945374_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2945668_2946307_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2946379_2947450_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2947446_2948397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2948812_2949337_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2949340_2949610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2949808_2950870_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2950953_2952588_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2952589_2953393_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2953421_2954381_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2954384_2955899_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2955935_2956940_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_033456131.1|2956947_2957181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2957370_2957841_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2957876_2958488_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2958518_2959142_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2959222_2960755_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2960789_2962031_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2962074_2963106_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2963102_2964272_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2964265_2964946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2965107_2965950_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2966112_2967084_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2967255_2968134_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2968156_2969227_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2969267_2970218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	3025683	3098553	4113052	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|3025683_3026100_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|3026210_3026843_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|3026871_3027315_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|3027336_3028428_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|3028482_3029283_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|3029418_3030039_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|3030178_3030652_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3031791_3032742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|3032738_3040400_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|3040640_3044687_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|3044999_3045581_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|3045577_3046876_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|3046955_3047984_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|3047907_3048258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|3048244_3049195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3049191_3050142_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|3050458_3051064_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|3051117_3052431_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|3052505_3052976_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|3052975_3053764_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|3053774_3055427_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|3055514_3056465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|3057626_3058133_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|3058129_3058894_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|3058909_3059194_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|3059258_3060248_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|3060419_3061349_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|3061320_3062007_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|3062040_3062586_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|3062630_3063896_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|3063892_3064795_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|3065976_3066921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|3067015_3068533_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|3068574_3070203_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|3070310_3071192_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|3074304_3074679_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|3074703_3075042_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|3075085_3076720_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|3076758_3078105_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|3078212_3079634_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|3079703_3080288_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|3080390_3081341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|3081475_3082582_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|3082592_3083690_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|3083834_3085040_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|3085046_3085568_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|3085564_3086056_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|3086052_3086304_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|3086284_3086770_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|3086905_3090367_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|3090363_3091269_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|3091278_3091710_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|3091956_3092460_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|3092471_3093938_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|3094012_3094888_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|3094884_3095892_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|3096359_3096665_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|3096755_3097346_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|3097536_3098553_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	3101696	3168507	4113052	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|3101696_3102647_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3102745_3103696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|3103692_3104487_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|3104518_3105223_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|3105297_3106098_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|3106094_3106502_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|3106498_3107140_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|3107132_3109154_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|3110393_3111725_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|3111721_3112672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|3114378_3114645_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|3115352_3115691_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|3120244_3120847_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|3120943_3122233_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|3122290_3123022_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|3123018_3123822_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|3123818_3124907_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|3124903_3125833_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|3125981_3127127_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|3127148_3128099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|3128429_3132251_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|3132407_3133076_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|3133080_3134754_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|3134772_3136092_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|3136096_3138448_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|3138467_3140636_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|3140632_3145822_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|3145911_3146226_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|3146453_3146699_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|3146793_3147312_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|3147411_3148617_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|3148732_3150130_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|3150246_3150825_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|3150897_3152289_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|3152456_3153407_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|3153687_3154308_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|3154304_3154718_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|3154714_3155758_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|3155813_3156002_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|3156011_3156776_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|3156866_3157523_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3157614_3158373_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3158398_3160000_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3160200_3161205_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3161305_3161569_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|3161686_3162463_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3163053_3164004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3166387_3167500_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|3167556_3168507_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	3198893	3239132	4113052	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|3198893_3199844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|3199830_3200076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|3199964_3200861_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3203138_3205364_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3205528_3206617_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3206573_3207227_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3207274_3208072_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3208603_3209554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|3209634_3210783_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3210839_3211790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|3211776_3211995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|3211888_3212194_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3212222_3212657_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3212658_3213903_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3213899_3214610_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3214624_3215536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|3215905_3216856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|3216947_3217352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3217348_3217807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|3217813_3218722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|3218718_3219585_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3219571_3220399_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3220409_3221537_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3222614_3223853_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3223894_3225157_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3225163_3225916_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3225967_3226153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3226428_3226893_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3226924_3227584_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3227728_3229837_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3229833_3230784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3230887_3231508_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3231611_3232352_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3233486_3234611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3234656_3235025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3235266_3236217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3237252_3237795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3238181_3239132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	3623577	3677318	4113052	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|3623577_3624528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3624932_3625577_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3625601_3626186_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3626286_3626904_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3626906_3628622_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3628618_3628927_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3628943_3629579_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3629605_3629908_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3630008_3630863_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3631050_3631275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3631444_3631717_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3632134_3632542_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3632911_3633706_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3633806_3635042_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3635110_3636127_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3636123_3637515_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3637511_3638708_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3638704_3640243_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3640239_3641499_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3643439_3644390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3644376_3644553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3645156_3646251_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3646243_3647578_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3647531_3648215_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3648240_3649404_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3649400_3650402_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3650401_3651274_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3651270_3652020_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3652016_3652808_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3652804_3653944_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3654252_3655005_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3655038_3655821_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3655824_3656214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3657353_3658217_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3658252_3659341_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3659337_3660288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3660274_3660688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3660641_3663620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3664546_3665425_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3667373_3668324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3668320_3668788_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3668830_3669601_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3669621_3670422_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3670432_3671842_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3671936_3672722_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3672961_3673978_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3674085_3674478_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3674615_3675296_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3675300_3676299_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3676367_3677318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	3683473	3742773	4113052	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3683473_3685237_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3685348_3686227_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3686339_3687155_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3687158_3687410_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3687494_3688511_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3688841_3689063_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3691423_3692341_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3692838_3694047_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3694126_3695698_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3695815_3696751_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3696939_3697884_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3697952_3698168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3698451_3704169_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3704174_3705302_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3705357_3705984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3706255_3707272_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3707367_3708078_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3708074_3709064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3709195_3710791_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3710793_3711531_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3711686_3712559_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3712827_3714048_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3714044_3714704_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3714775_3715408_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3715437_3715956_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3715966_3717076_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3717122_3717977_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3717978_3718881_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3720103_3721054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3722810_3723800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3723975_3724764_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3724760_3725792_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3725810_3726374_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3726429_3727950_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3728213_3728918_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3728925_3729663_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3729768_3730143_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3730185_3731475_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3731471_3732641_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3732637_3733477_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3733536_3734472_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3734484_3735435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3735533_3736496_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3736527_3736887_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3737011_3737914_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3737915_3739688_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3739722_3740499_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3741822_3742773_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	3757711	3815784	4113052	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3757711_3758662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3758790_3759924_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3759967_3760873_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3760875_3762576_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3762572_3763493_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3763500_3764478_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3764536_3765571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3767545_3767782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3767908_3768772_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3768860_3769682_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3769761_3770499_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3770495_3771488_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3771601_3772264_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3772308_3773457_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3775780_3776731_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3777071_3778022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3778120_3779071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3779367_3779865_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3779907_3781683_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3781729_3782557_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3782563_3783298_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3784467_3785262_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3785551_3786142_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3786175_3787504_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3787578_3788724_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3788835_3789834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3789796_3790231_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3791747_3792632_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3792628_3793834_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3793830_3794691_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3794803_3796594_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3796634_3797300_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3797300_3797609_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3797774_3799061_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3800494_3801445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3803396_3804611_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3804716_3805706_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3805702_3806311_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3806323_3806953_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3806949_3807570_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3807601_3808393_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3809235_3809700_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3809718_3810645_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3810698_3811985_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3812915_3813788_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3813784_3814735_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3814833_3815784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP015765	Bordetella pertussis strain VA-09, complete genome	4113052	3976546	4094658	4113052	tRNA,transposase,protease	Bacillus_phage(12.5%)	109	NA	NA
WP_005013747.1|3976546_3977497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302769.1|3977483_3977633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814960.1|3977619_3978348_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_023852939.1|3978354_3979623_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3979619_3980453_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3980489_3981230_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3981349_3982525_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3982521_3983475_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3983488_3983890_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_019248876.1|3983882_3984560_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3984575_3984740_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3984856_3985705_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3985701_3986355_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3986371_3987655_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3987894_3989520_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3989613_3990015_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3990039_3990474_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3990475_3992125_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3992165_3993335_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3993337_3994201_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3997564_3998269_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3998262_3999057_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3999053_4000019_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|4000022_4000943_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|4001039_4002203_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|4002425_4003316_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|4003319_4003823_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|4003865_4004864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|4004860_4005811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|4005899_4006187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154299516.1|4006233_4006392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|4006378_4007329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|4007388_4007949_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|4009451_4010333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|4010446_4011649_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|4011777_4013637_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|4013714_4014524_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|4014594_4015596_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|4015627_4016488_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|4016687_4017692_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|4017688_4019275_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|4019283_4020210_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|4020232_4020859_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|4020957_4021908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|4021904_4023041_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|4023094_4023871_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|4023895_4024354_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|4024493_4025135_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|4025199_4026582_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|4026601_4027456_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|4027614_4028226_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|4028235_4028685_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|4029203_4029344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|4029351_4029513_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077068974.1|4029588_4029804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|4029790_4030741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|4031784_4032063_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_085964336.1|4033205_4033781_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929715.1|4033816_4035496_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|4035492_4037244_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|4037240_4037366_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|4037379_4038534_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010929713.1|4038549_4040169_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|4040252_4040798_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|4041357_4042308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|4043038_4044019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|4044032_4045157_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|4045164_4046919_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|4047025_4047925_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|4047989_4048973_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|4049108_4050089_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|4050105_4051497_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|4051648_4052185_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|4052115_4053501_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|4053643_4054282_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|4054368_4056258_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|4056254_4057196_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|4057301_4058351_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|4058603_4059305_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|4059301_4060000_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|4060000_4061356_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|4061352_4061844_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|4061862_4062819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|4064229_4066332_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|4066502_4067546_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|4067589_4068333_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|4069354_4069765_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|4070714_4071512_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_153302767.1|4071450_4071624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930742.1|4071610_4072561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|4072557_4073508_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4073594_4074545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|4074659_4075661_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|4075751_4076318_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|4076636_4078550_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|4078591_4080022_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|4080134_4081547_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|4081563_4082259_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_127795999.1|4082290_4082491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|4082477_4083428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|4083473_4084166_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|4084162_4085056_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|4085450_4086551_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|4086632_4087007_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|4087066_4089931_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|4090075_4090816_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|4090885_4092097_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|4092125_4093094_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|4093707_4094658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
