The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	11808	82075	4128711	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|11808_12759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|12839_13751_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|13811_14957_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|14976_15891_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|15962_16712_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|16711_17641_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|17884_19711_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|19793_20435_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|20624_21659_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|23495_24560_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|25357_26266_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|27753_29028_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|29181_29562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|29569_30442_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|30747_31128_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|31338_32064_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|32159_33110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|33214_34264_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|34401_35418_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|36926_37499_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|37558_38290_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|38341_39259_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|40066_43246_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|43242_44625_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|44694_44946_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|45091_45742_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|45892_48007_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|48082_48934_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|48930_49557_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|49553_51308_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|51600_54306_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|54318_55980_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|55992_57783_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|58004_59180_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|59222_60173_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|60271_61012_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|61206_63243_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|63260_64271_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|64388_65582_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|65611_66385_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|66381_67572_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|67597_68536_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|68532_70881_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|71035_71743_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|71780_72914_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|73006_73159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|73190_73739_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|73757_74243_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|74420_75359_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|75361_75679_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|75724_76669_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|78349_79000_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|79053_79389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|79385_80246_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|80262_80544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|80617_80881_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|81124_82075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	94292	151671	4128711	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_010931363.1|94292_95309_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|96139_97147_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|97143_98787_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|98783_99686_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|99811_100285_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|100274_101297_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|101293_102721_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|103658_104675_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|105007_105943_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|105992_107873_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|107939_108284_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|108428_109565_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|109561_110635_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|110792_112229_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|112319_112961_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|113296_114313_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|117457_118879_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|119142_119859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|119943_120261_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|120301_120715_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|120716_121076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|121118_122663_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|122746_123577_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|123611_124766_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|124808_125681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|125797_128086_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|129291_129756_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|129782_130733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|131100_131877_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|131921_132779_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|132800_133817_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|133951_134992_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|135186_137268_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|137503_138997_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|139227_140022_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|140242_141601_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|141597_142440_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|142458_144345_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|144582_145215_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|145233_145836_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|145839_146001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|145987_146938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|147740_148541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|148584_149571_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|149710_150724_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|150720_151671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	187022	252607	4128711	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|187022_188819_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|188818_189787_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|189856_190702_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|190769_191324_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|191370_192321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|192419_193052_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|193217_195500_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|195654_198351_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|198476_198965_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|201375_204246_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|204291_205506_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|205735_207163_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|207203_208352_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|208364_209123_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|209210_210113_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|210109_211060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|211189_212173_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|212227_212950_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|214428_215784_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|215864_218240_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|218404_220480_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|220541_221342_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|221443_222406_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|222393_223149_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|223256_224894_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|224961_225699_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|225801_226377_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|226549_227086_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|227088_227433_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|227448_228294_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|228332_229712_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|229789_230671_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|230769_231720_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|231716_232127_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|232234_233089_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|233081_234044_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|234089_235214_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|235325_236198_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|236322_237102_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|237255_238677_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|239111_240809_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|240837_240960_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|241035_241977_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|242303_243050_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|243057_243984_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|244105_245023_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|245062_246016_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|246040_246619_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|248292_248901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|248978_249332_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|249415_250405_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|250607_251558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|251656_252607_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	415164	481664	4128711	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|415164_416115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|416180_416360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|416476_417199_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|417218_418364_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|419271_420222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|420409_421612_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|421608_422367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|422760_423393_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|424348_426949_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|426936_430356_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|430363_431269_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|431407_431986_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|431982_432894_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|432907_433588_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|433789_435829_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|435847_436834_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|436859_437657_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|437653_438847_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|438843_439806_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|439823_440864_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|440851_441460_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|443048_444044_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|444063_445242_+	mandelate racemase	NA	NA	NA	NA	NA
WP_003811401.1|445252_446170_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|446225_447176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|447274_448045_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|448041_448722_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|448788_449577_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929632.1|449823_450840_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|451145_452300_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|456805_457288_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|457305_457596_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|457722_458433_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|458616_459024_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|459036_459456_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|459503_460208_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|460273_461695_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|461733_462498_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|462541_463327_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|463326_464016_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|464018_465152_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|465169_466192_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|466261_467908_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|467941_469474_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|469552_471373_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|471493_473113_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|473291_474734_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|474950_475967_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|476013_476802_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|476824_477094_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|477110_477902_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|477913_478255_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|478265_478766_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|478758_479769_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|479771_480344_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|480713_481664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	509835	537250	4128711	transposase,protease	Emiliania_huxleyi_virus(25.0%)	28	NA	NA
WP_010930352.1|509835_511170_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|511222_513559_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|513684_514248_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|514256_515348_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|515419_515875_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|515875_516670_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|516666_517848_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|517834_518440_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|518436_519210_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|519221_520049_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_057110967.1|520210_522574_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.9e-165
WP_010930359.1|522641_523361_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|523484_523910_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|523944_524895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|525012_525939_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|526004_527162_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|527142_527610_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|527757_528708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|528724_529159_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|529148_529499_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|529695_530850_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|530846_532019_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|532066_532960_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|533005_533443_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|533502_534192_+	VIT family protein	NA	NA	NA	NA	NA
WP_005012067.1|534201_535152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|535250_536201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|536299_537250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	631947	691859	4128711	tRNA,transposase	Streptococcus_virus(12.5%)	56	NA	NA
WP_010930416.1|631947_632436_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|632553_633132_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_003809561.1|633204_633606_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_153302776.1|633544_633718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|633704_634655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|634661_635774_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|636460_637663_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|637866_640527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|640539_643944_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_023995689.1|644611_646837_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|646883_647210_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|647260_647869_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|647967_648918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|649016_649967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|650036_650801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|650797_651397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|651500_652346_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|652411_653038_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|653034_653985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|653971_654160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|654083_655205_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|655185_656187_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|656292_657804_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|657800_659105_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|659216_659777_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|660044_660599_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|661054_661270_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|661524_664122_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|664118_665306_+	cupin	NA	NA	NA	NA	NA
WP_062826574.1|665574_665799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248658.1|665964_666579_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|666667_667795_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|667806_668712_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|669462_669618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|669604_670555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|670736_671489_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|671557_672217_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|672213_672942_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|672954_675234_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|675258_675462_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|675503_676151_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|676271_677189_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|677185_677899_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|678136_678907_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|678911_679511_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|679755_681246_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|681304_681589_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|681585_681714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|681726_681882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|682154_683081_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|683217_683958_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|684124_685501_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|685682_686588_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|688239_690042_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|690159_690810_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|690908_691859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	737030	792621	4128711	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|737030_737981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|738039_738813_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|738805_740362_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|740358_741309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|741295_741451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|742635_743238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|743477_744179_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|744172_744955_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|745139_746090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|746076_746238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|746188_746926_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|747115_747874_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|747920_748910_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|749087_750056_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|751595_752564_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|752572_753514_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|753987_754998_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|754988_756503_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|756499_757846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|757848_758883_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|758932_760558_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|761110_762061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|762165_763113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|763166_764981_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|764973_765648_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|765777_768852_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|768865_769165_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|769479_770103_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|770346_771216_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|771193_772138_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|772223_773195_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|773262_774036_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|774032_775229_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|775259_776210_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|776431_777121_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|777185_777941_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|777992_778985_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|778994_779948_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|780063_781026_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|782427_782856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|782852_783803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|784096_784819_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|785257_786445_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|786448_786829_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|788548_789520_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|789533_790247_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|790251_791169_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|791275_791572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|791670_792621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1112789	1160805	4128711	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|1112789_1113740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1113839_1116440_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1116546_1117551_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1117659_1119000_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1119040_1120069_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1120264_1120810_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1120806_1121367_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1121465_1122416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1122453_1123041_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1123058_1123442_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1124801_1126094_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1126228_1127269_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1127366_1128383_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1128650_1129298_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1129423_1130182_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1130256_1130946_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1130963_1131848_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1131844_1132624_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1132650_1133328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1133616_1134369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1134487_1135888_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1135911_1136310_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1136485_1136686_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1136824_1137553_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1137686_1139102_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1139105_1139969_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1139981_1140731_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1140913_1142929_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1142910_1143459_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1143535_1144255_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1144353_1145304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1145402_1146353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1146501_1146840_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1146897_1147059_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1147090_1147291_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1147556_1150130_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1150200_1152774_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1155300_1155789_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1155880_1157032_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1157085_1157907_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1157945_1159175_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1159303_1159744_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1159688_1159868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1159854_1160805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1222367	1281636	4128711	tRNA,transposase,protease	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1222367_1223318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1223442_1224252_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1224307_1224466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1224452_1225403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1226676_1227894_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1228950_1229853_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1229929_1230802_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1230932_1231301_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1231358_1232405_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1232600_1233857_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1233861_1235199_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1235348_1236305_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1236407_1237340_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1237455_1237776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1237777_1238128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1238175_1239750_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1239802_1240747_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1240764_1241595_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1241587_1243222_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1243218_1244574_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1245480_1247058_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1247061_1248336_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1248433_1248808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1250523_1251657_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1251694_1252300_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1252296_1253115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1253186_1255811_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1255797_1256052_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1256118_1256700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1257003_1257264_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1257429_1258053_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1258052_1258826_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1258822_1260031_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1260056_1260530_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1260603_1261554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1261652_1262603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1262701_1264051_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1264816_1265572_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1265663_1268546_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1268868_1269294_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1269321_1270470_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1270466_1270973_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1270979_1272275_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1272315_1273620_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1273621_1274260_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_077069010.1|1274262_1275423_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1275449_1276805_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1276808_1277879_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1278017_1278254_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1278341_1279448_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1279413_1280718_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1280736_1281636_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 10
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1291876	1336199	4128711	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|1291876_1292827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1292813_1293014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1293026_1294112_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1294127_1294889_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1294885_1295809_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1295907_1296432_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1296440_1297184_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1297279_1297519_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1297532_1297685_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1297770_1299261_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1299352_1300291_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1300287_1300464_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1300466_1301129_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1302750_1302894_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1302890_1303865_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1303901_1304045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1304031_1304982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1304978_1306253_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1306350_1307550_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1307546_1308200_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1308196_1309633_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1309620_1309980_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1310952_1311903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1312001_1312952_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1313997_1315863_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1316120_1317641_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1317728_1318379_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1319327_1320623_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1320644_1321529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1321627_1322503_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1322492_1322849_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|1322922_1323954_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1324083_1324263_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1324360_1324885_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1324895_1325732_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1325844_1326216_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1326212_1326764_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1326779_1328471_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1328519_1329200_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1329447_1329912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1330081_1331011_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1331023_1331671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1331744_1333562_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1333645_1334596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|1335100_1335262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1335248_1336199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1349405	1410181	4128711	transposase	Erysipelothrix_phage(20.0%)	50	NA	NA
WP_010930153.1|1349405_1350422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1350564_1351917_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1352091_1352388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1352486_1353437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1353535_1354486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1354937_1355939_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1356111_1356969_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1356965_1358228_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1358328_1358703_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|1358751_1359963_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1360047_1360818_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1360931_1361696_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|1361811_1362948_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1362944_1363751_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1365495_1366467_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1366623_1367136_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1367294_1368269_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1369269_1370064_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1370089_1370896_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|1371006_1371597_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1371607_1372786_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1372888_1373263_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1373515_1374847_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1374913_1378144_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1379634_1380381_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1380465_1380927_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1380964_1382023_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1381985_1383815_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1383854_1384427_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|1385851_1386763_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|1386991_1388314_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1388673_1389309_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1389268_1390219_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1391089_1391962_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1392039_1393179_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|1393528_1394794_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1394799_1395327_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1395331_1396150_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1396149_1396872_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1396893_1397208_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|1397204_1398374_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1398404_1399280_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1399276_1400596_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1400668_1401865_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1401875_1403363_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1405957_1406857_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1406994_1407960_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1408058_1409009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|1409052_1409244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1409230_1410181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1571066	1636787	4128711	tRNA,transposase,protease	Salmonella_phage(15.38%)	60	NA	NA
WP_023853254.1|1571066_1573010_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930927.1|1573006_1573942_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|1573946_1574534_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|1574526_1575417_-	GTPase Era	NA	NA	NA	NA	NA
WP_003813785.1|1575413_1576184_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.2e-20
WP_010930929.1|1576180_1577065_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|1577087_1578881_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|1579011_1580499_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_003821355.1|1580536_1581598_-	putative sigma factor regulatory protein	NA	NA	NA	NA	NA
WP_023853242.1|1581594_1582095_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|1582107_1582707_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|1582703_1583204_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|1583205_1584435_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|1584624_1584864_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|1585046_1585799_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|1585800_1586736_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|1586817_1587804_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|1587803_1588862_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|1588918_1589101_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|1589152_1589746_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|1589854_1590454_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|1590450_1591161_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|1591162_1591990_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|1593806_1595048_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|1595059_1595833_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_010929591.1|1595859_1596810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|1596908_1597691_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|1597779_1599006_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|1599731_1601117_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|1601135_1601741_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|1601737_1603594_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|1603590_1604391_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|1604405_1605599_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|1605666_1606641_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|1606763_1607987_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|1608097_1610302_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|1610596_1611256_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|1611263_1611470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1611808_1612564_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|1612579_1612741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|1612834_1613350_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|1613622_1613940_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|1614127_1614376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|1614654_1616010_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|1616056_1617436_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|1617498_1618131_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|1618130_1620491_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|1620532_1621492_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|1621478_1622165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|1622161_1622494_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|1622609_1623560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1623658_1624609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|1624605_1626672_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|1626671_1626944_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|1627638_1627728_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|1627727_1629512_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|1629535_1631701_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|1631711_1632311_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|1635132_1635828_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|1635836_1636787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1722904	1763573	4128711	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|1722904_1723855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|1723965_1724148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1724247_1724844_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|1725027_1726119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|1726618_1727029_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|1727087_1727429_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|1727434_1729852_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|1729864_1730887_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|1730961_1731321_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|1731336_1731534_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|1731869_1732820_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|1732806_1732968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|1733014_1733464_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|1733460_1734411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|1734397_1734544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1734521_1735970_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|1736084_1736366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|1736318_1736483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1736469_1737420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|1737664_1738378_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|1738500_1738728_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|1739022_1739661_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|1739733_1740804_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|1740800_1741751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|1742166_1742691_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|1742694_1742964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|1743162_1744224_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|1744307_1745942_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|1745943_1746747_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|1746775_1747735_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|1747738_1749253_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|1749289_1750294_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|1750725_1751196_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|1751231_1751843_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|1751873_1752497_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|1752577_1754110_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|1754144_1755386_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|1755429_1756461_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|1756457_1757627_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|1757620_1758301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|1758462_1759305_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|1759467_1760439_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|1760610_1761489_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|1761511_1762582_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|1762622_1763573_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1819037	1891907	4128711	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|1819037_1819454_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|1819564_1820197_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|1820225_1820669_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|1820690_1821782_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|1821836_1822637_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|1822772_1823393_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|1823532_1824006_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1825145_1826096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826587.1|1826092_1833754_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|1833994_1838041_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|1838353_1838935_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|1838931_1840230_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|1840309_1841338_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|1841261_1841612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|1841598_1842549_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1842545_1843496_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|1843812_1844418_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|1844471_1845785_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|1845859_1846330_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|1846329_1847118_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|1847128_1848781_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|1848868_1849819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|1850980_1851487_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|1851483_1852248_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|1852263_1852548_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|1852612_1853602_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|1853773_1854703_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|1854674_1855361_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|1855394_1855940_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|1855984_1857250_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|1857246_1858149_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|1859330_1860275_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|1860369_1861887_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|1861928_1863557_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|1863664_1864546_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|1867658_1868033_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|1868057_1868396_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|1868439_1870074_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|1870112_1871459_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|1871566_1872988_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|1873057_1873642_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|1873744_1874695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|1874829_1875936_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|1875946_1877044_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|1877188_1878394_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|1878400_1878922_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|1878918_1879410_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|1879406_1879658_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|1879638_1880124_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|1880259_1883721_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|1883717_1884623_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|1884632_1885064_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|1885310_1885814_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|1885825_1887292_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|1887366_1888242_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|1888238_1889246_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|1889713_1890019_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|1890109_1890700_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|1890890_1891907_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1895050	1961861	4128711	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|1895050_1896001_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1896099_1897050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|1897046_1897841_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|1897872_1898577_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|1898651_1899452_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|1899448_1899856_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|1899852_1900494_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|1900486_1902508_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|1903747_1905079_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1905075_1906026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|1907732_1907999_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|1908706_1909045_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|1913598_1914201_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|1914297_1915587_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|1915644_1916376_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|1916372_1917176_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|1917172_1918261_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1918257_1919187_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|1919335_1920481_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|1920502_1921453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|1921783_1925605_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|1925761_1926430_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|1926434_1928108_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|1928126_1929446_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|1929450_1931802_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|1931821_1933990_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|1933986_1939176_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|1939265_1939580_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|1939807_1940053_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|1940147_1940666_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|1940765_1941971_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|1942086_1943484_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|1943600_1944179_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|1944251_1945643_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|1945810_1946761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|1947041_1947662_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|1947658_1948072_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|1948068_1949112_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|1949167_1949356_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|1949365_1950130_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|1950220_1950877_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|1950968_1951727_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|1951752_1953354_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|1953554_1954559_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|1954659_1954923_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|1955040_1955817_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|1956407_1957358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1959741_1960854_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|1960910_1961861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	1992246	2032484	4128711	transposase	Planktothrix_phage(50.0%)	39	NA	NA
WP_005012067.1|1992246_1993197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|1993183_1993429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|1993317_1994214_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|1996491_1998717_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|1998881_1999970_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|1999926_2000580_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2000627_2001425_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2001956_2002907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2002987_2004136_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2004192_2005143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2005129_2005348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2005241_2005547_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2005575_2006010_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2006011_2007256_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2007252_2007963_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2007977_2008889_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|2009258_2010209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|2010300_2010705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2010701_2011160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2011166_2012075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2012071_2012938_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2012924_2013752_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2013762_2014890_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2015967_2017206_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2017247_2018510_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2018516_2019269_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2019320_2019506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2019781_2020246_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2020277_2020937_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2021081_2023190_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2023186_2024137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2024240_2024861_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2024964_2025705_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2026839_2027964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2028009_2028378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2028619_2029570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2030605_2031148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2031340_2031547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2031533_2032484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	2416932	2470673	4128711	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|2416932_2417883_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|2418287_2418932_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|2418956_2419541_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|2419641_2420259_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|2420261_2421977_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|2421973_2422282_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|2422298_2422934_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|2422960_2423263_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|2423363_2424218_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|2424405_2424630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|2424799_2425072_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|2425489_2425897_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|2426266_2427061_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|2427161_2428397_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|2428465_2429482_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|2429478_2430870_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|2430866_2432063_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|2432059_2433598_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|2433594_2434854_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_010929969.1|2436794_2437745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|2437731_2437908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|2438511_2439606_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|2439598_2440933_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|2440886_2441570_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|2441595_2442759_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|2442755_2443757_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|2443756_2444629_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|2444625_2445375_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|2445371_2446163_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|2446159_2447299_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|2447607_2448360_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|2448393_2449176_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|2449179_2449569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|2450708_2451572_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|2451607_2452696_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2452692_2453643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|2453629_2454043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|2453996_2456975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|2457901_2458780_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|2460728_2461679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|2461675_2462143_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|2462185_2462956_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|2462976_2463777_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|2463787_2465197_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|2465291_2466077_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|2466316_2467333_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|2467440_2467833_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|2467970_2468651_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|2468655_2469654_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|2469722_2470673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	2476828	2536129	4128711	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|2476828_2478592_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|2478703_2479582_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|2479694_2480510_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|2480513_2480765_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|2480849_2481866_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|2482196_2482418_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|2484778_2485696_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|2486193_2487402_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|2487481_2489053_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|2489170_2490106_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|2490294_2491239_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|2491307_2491523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|2491806_2497524_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|2497529_2498657_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|2498712_2499339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|2499610_2500627_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|2500722_2501433_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|2501429_2502419_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|2502550_2504146_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|2504148_2504886_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|2505041_2505914_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|2506182_2507403_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|2507399_2508059_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|2508130_2508763_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|2508792_2509311_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|2509321_2510431_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|2510477_2511332_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|2511333_2512236_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2513458_2514409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|2516166_2517156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|2517331_2518120_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|2518116_2519148_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|2519166_2519730_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|2519785_2521306_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|2521569_2522274_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|2522281_2523019_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|2523124_2523499_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|2523541_2524831_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|2524827_2525997_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|2525993_2526833_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|2526892_2527828_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|2527840_2528791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|2528889_2529852_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|2529883_2530243_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|2530367_2531270_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|2531271_2533044_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|2533078_2533855_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|2535178_2536129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	2551067	2609140	4128711	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|2551067_2552018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|2552146_2553280_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|2553323_2554229_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|2554231_2555932_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|2555928_2556849_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|2556856_2557834_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|2557892_2558927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|2560901_2561138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|2561264_2562128_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|2562216_2563038_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|2563117_2563855_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|2563851_2564844_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|2564957_2565620_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|2565664_2566813_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|2569136_2570087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|2570427_2571378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2571476_2572427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|2572723_2573221_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|2573263_2575039_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|2575085_2575913_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|2575919_2576654_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|2577823_2578618_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|2578907_2579498_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|2579531_2580860_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|2580934_2582080_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|2582191_2583190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|2583152_2583587_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|2585103_2585988_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|2585984_2587190_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|2587186_2588047_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|2588159_2589950_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|2589990_2590656_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|2590656_2590965_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|2591130_2592417_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|2593850_2594801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|2596752_2597967_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|2598072_2599062_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|2599058_2599667_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|2599679_2600309_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|2600305_2600926_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|2600957_2601749_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|2602591_2603056_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|2603074_2604001_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|2604054_2605341_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|2606271_2607144_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|2607140_2608091_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|2608189_2609140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	2618940	2690281	4128711	tRNA,transposase	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
WP_010929957.1|2618940_2620215_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|2620937_2621888_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2621986_2622937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929955.1|2623035_2625411_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929954.1|2625430_2626267_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010929953.1|2626263_2627061_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929952.1|2627057_2629247_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929951.1|2629298_2630285_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929950.1|2630366_2632169_-	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929949.1|2632426_2634544_+	crotonase	NA	NA	NA	NA	NA
WP_076879537.1|2634540_2635758_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929947.1|2635779_2636268_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929946.1|2636417_2638250_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929945.1|2638447_2639428_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929944.1|2639484_2640504_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815697.1|2640567_2641461_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929943.1|2641859_2642639_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929942.1|2642638_2644780_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929941.1|2644927_2645872_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929940.1|2645955_2646939_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003815690.1|2647303_2648578_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA	NA
WP_010929939.1|2648608_2649037_+	RidA family protein	NA	NA	NA	NA	NA
WP_003815682.1|2649047_2649722_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929938.1|2649714_2650887_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_010929937.1|2651019_2652039_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929936.1|2652219_2653410_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|2653423_2654554_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929934.1|2654597_2656319_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_003815672.1|2656437_2657400_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815671.1|2657506_2658478_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247835.1|2659096_2659765_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815668.1|2659761_2660169_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010929577.1|2660165_2661116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|2663560_2664295_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|2664704_2664884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|2665074_2666388_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|2666403_2667915_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|2667911_2669117_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|2669312_2670290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|2670382_2670877_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|2671006_2672065_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|2672061_2673681_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_077274092.1|2673640_2673949_-	GtrA family protein	NA	NA	NA	NA	NA
WP_010929784.1|2673868_2674972_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|2674968_2675424_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|2675429_2676353_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|2676442_2677102_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|2677098_2678013_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|2678101_2679052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879611.1|2679130_2680108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|2680568_2681168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807867.1|2681236_2682229_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486054.1|2682278_2683868_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_014486053.1|2683908_2684805_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486052.1|2684801_2686508_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_003819219.1|2686612_2687854_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486051.1|2687850_2688621_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_014486050.1|2688669_2689371_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486049.1|2689297_2690281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	2760103	2814296	4128711	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
WP_005013747.1|2760103_2761054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302769.1|2761040_2761190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814960.1|2761176_2761905_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_023852939.1|2761911_2763180_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|2763176_2764010_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|2764046_2764787_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|2764906_2766082_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|2766078_2767032_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|2767045_2767447_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_019248876.1|2767439_2768117_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|2768132_2768297_-	rubredoxin	NA	NA	NA	NA	NA
WP_003814984.1|2769257_2769911_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|2769927_2771211_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|2771450_2773076_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|2773169_2773571_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|2773595_2774030_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|2774031_2775681_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|2775721_2776891_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|2776893_2777757_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|2781120_2781825_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|2781818_2782613_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|2782609_2783575_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|2783578_2784499_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|2784595_2785759_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|2785981_2786872_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|2786875_2787379_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|2787421_2788420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|2788416_2789367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|2789455_2789743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154299516.1|2789789_2789948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2789934_2790885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|2790944_2791505_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|2793007_2793889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|2794002_2795205_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|2795333_2797193_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|2797270_2798080_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|2798150_2799152_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|2799183_2800044_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|2800243_2801248_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|2801244_2802831_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|2802839_2803766_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|2803788_2804415_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|2804513_2805464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|2805460_2806597_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|2806650_2807427_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|2807451_2807910_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|2808049_2808691_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|2808755_2810138_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|2810157_2811012_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|2811170_2811782_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929719.1|2812758_2812899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|2812906_2813068_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077068974.1|2813143_2813359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2813345_2814296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	2824912	2876821	4128711	tRNA,transposase,protease	uncultured_Caudovirales_phage(33.33%)	42	NA	NA
WP_005012067.1|2824912_2825863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_065470066.1|2825944_2826913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|2827643_2828624_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|2828637_2829762_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|2829769_2831524_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|2831630_2832530_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|2832594_2833578_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|2833713_2834694_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|2834710_2836102_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|2836253_2836790_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|2836720_2838106_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|2838248_2838887_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|2838973_2840863_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|2840859_2841801_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|2841906_2842956_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|2843208_2843910_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|2843906_2844605_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|2844605_2845961_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|2845957_2846449_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|2846467_2847424_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|2848834_2850937_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|2851107_2852151_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|2852194_2852938_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|2853959_2854370_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|2855319_2856117_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_153302767.1|2856055_2856229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930742.1|2856215_2857166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2857162_2858113_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2858199_2859150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|2859264_2860266_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|2860356_2860923_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|2861241_2863155_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|2863196_2864627_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|2864739_2866152_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|2866168_2866864_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_127796002.1|2866895_2867096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2867082_2868033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|2868057_2868957_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|2869111_2869660_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|2869698_2870418_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|2870489_2873432_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446321.1|2874025_2876821_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 24
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	2917234	2985060	4128711	tRNA,transposase	Bacillus_phage(22.22%)	60	NA	NA
WP_010929591.1|2917234_2918185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068973.1|2918171_2918351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|2918391_2918868_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|2918949_2919633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|2919657_2921265_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|2921313_2921943_-	LysE family transporter	NA	NA	NA	NA	NA
WP_029443820.1|2921976_2923359_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_003815889.1|2923689_2924319_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|2924296_2925199_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|2926643_2927594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|2928152_2929715_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|2929711_2930347_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|2930575_2931598_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|2931763_2932540_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|2932703_2933402_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|2933413_2934724_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|2934779_2935457_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|2935453_2936851_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|2936956_2937418_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929651.1|2937501_2938722_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929650.1|2938773_2939649_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|2939750_2940182_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|2940206_2940935_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|2940931_2941912_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|2942678_2943461_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446330.1|2943627_2944551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|2944622_2945381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|2945399_2945843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|2945863_2946676_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|2946681_2947614_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|2947597_2948821_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|2948908_2949691_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|2949743_2953706_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|2954452_2955961_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_153302766.1|2956249_2956393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2956379_2957330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|2958596_2959475_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|2959502_2959805_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|2959897_2961337_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|2961335_2961983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|2962409_2964110_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|2964200_2965454_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|2966347_2966737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929637.1|2966733_2967744_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|2968580_2969414_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|2969410_2970316_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|2970414_2971365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|2971465_2972287_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|2972392_2973433_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|2973475_2974768_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|2974778_2975654_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|2975650_2976451_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|2976526_2977543_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|2977825_2978143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|2978233_2978581_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|2978868_2980551_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|2980560_2981244_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|2981305_2981935_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|2982016_2983210_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|2984109_2985060_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	3012883	3048823	4128711	transposase	Sphingobium_phage(33.33%)	33	NA	NA
WP_041166334.1|3012883_3013828_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3013902_3014853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|3014849_3016259_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_076879597.1|3016457_3017207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807805.1|3017208_3017460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|3017548_3018130_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|3018161_3018782_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|3018943_3020851_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|3022043_3022358_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|3022451_3023402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|3023823_3025005_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|3025634_3026906_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|3026940_3027999_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019248465.1|3028102_3028420_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|3028432_3029014_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929598.1|3029208_3030045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929597.1|3030468_3031410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929596.1|3031593_3032013_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|3032012_3033239_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_005012808.1|3034039_3034990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929594.1|3035083_3035983_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|3036062_3036824_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|3036820_3037510_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|3037534_3038125_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|3038130_3038865_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_029443813.1|3040096_3041353_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929591.1|3041395_3042346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|3042481_3043096_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|3043092_3044340_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003815255.1|3045509_3046403_-	membrane protein	NA	NA	NA	NA	NA
WP_003815265.1|3046530_3046767_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815267.1|3046738_3047374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|3047872_3048823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	3103152	3170315	4128711	tRNA,transposase	Planktothrix_phage(37.5%)	59	NA	NA
WP_010931687.1|3103152_3104505_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_003816050.1|3104621_3106208_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931686.1|3106227_3107202_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931685.1|3107198_3108119_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931684.1|3108145_3109147_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	8.9e-15
WP_019248556.1|3109143_3110160_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_019248557.1|3110217_3111417_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003816037.1|3111546_3112470_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931682.1|3112513_3113557_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931681.1|3113558_3114374_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.4	6.1e-30
WP_010927255.1|3114370_3115252_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929556.1|3115312_3116761_-	catalase	NA	A0A2K9L0T1	Tupanvirus	40.8	3.2e-106
WP_153302799.1|3116744_3116897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3116883_3117834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853477.1|3118380_3119619_-	CoA transferase	NA	NA	NA	NA	NA
WP_003819309.1|3119700_3120480_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931679.1|3120476_3121484_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003808010.1|3121657_3122344_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853488.1|3122424_3123186_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_010931677.1|3123182_3124007_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931676.1|3124008_3124977_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931675.1|3124999_3126412_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931674.1|3126451_3127606_-	CoA transferase	NA	NA	NA	NA	NA
WP_077598841.1|3127595_3128618_-	CoA transferase	NA	NA	NA	NA	NA
WP_023853639.1|3128506_3129457_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996063.1|3129443_3129620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815086.1|3129639_3130413_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003815084.1|3130502_3131312_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931673.1|3131322_3132399_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_010931672.1|3136250_3136898_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010927126.1|3137109_3138018_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003815073.1|3138014_3138686_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_003815070.1|3139004_3140021_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815068.1|3140140_3141331_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815066.1|3141332_3142433_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815064.1|3142487_3143228_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_010931671.1|3143348_3144371_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815061.1|3144370_3144838_+	membrane protein	NA	NA	NA	NA	NA
WP_010931670.1|3144856_3146383_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_010931669.1|3146369_3147827_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_003815055.1|3147924_3148113_+	DUF3460 family protein	NA	NA	NA	NA	NA
WP_003815053.1|3148139_3149027_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815051.1|3149071_3149914_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815049.1|3150011_3150359_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815047.1|3150441_3151185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820519.1|3151425_3152265_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_019247320.1|3152267_3152918_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003815038.1|3152950_3153712_+	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931666.1|3153892_3155143_+	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010931665.1|3155139_3158208_+	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003815032.1|3158204_3161312_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_023994937.1|3161308_3162802_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010929577.1|3162798_3163749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3163847_3164798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3164896_3165847_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815027.1|3165947_3166910_-	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010931663.1|3166902_3167769_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_010931662.1|3167968_3169195_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931661.1|3169364_3170315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	3735851	3849605	4128711	tRNA,terminase,tail,transposase,protease	uncultured_Caudovirales_phage(14.29%)	114	NA	NA
WP_005013747.1|3735851_3736802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|3737277_3738168_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|3738164_3738986_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|3739184_3739676_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|3739694_3740768_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|3740814_3741918_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|3741993_3742614_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|3742634_3743144_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|3743198_3743450_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|3743513_3744647_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|3744654_3745041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|3745037_3747557_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|3747985_3748324_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|3748320_3748827_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|3748888_3749689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|3749799_3750741_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|3750834_3752370_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|3754049_3755900_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|3755903_3756737_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|3756736_3757678_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|3757929_3758925_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|3759042_3761331_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|3761637_3762546_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|3762600_3763566_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|3763640_3765302_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|3765298_3766084_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929969.1|3766232_3767183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|3767881_3768265_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|3768322_3768925_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|3768942_3769344_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|3769477_3770371_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|3770367_3770949_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|3771743_3772478_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|3772518_3773568_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|3773715_3774294_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|3774680_3775658_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|3775751_3780146_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|3780346_3781195_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|3781353_3782166_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|3782221_3783172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|3783270_3784221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|3784207_3784372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|3784319_3785120_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|3785181_3785565_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|3785576_3787010_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|3787216_3787546_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|3787548_3788217_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|3788480_3789401_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|3789447_3789660_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|3789682_3790105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|3790121_3791222_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|3791318_3792836_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|3792911_3793751_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|3793772_3794654_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|3794735_3795830_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|3796123_3797074_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|3797148_3798090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|3798173_3798533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|3798914_3799952_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|3800268_3801609_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|3801618_3802071_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|3802167_3803349_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_003814219.1|3803408_3804440_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|3804480_3804720_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|3804789_3806379_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|3806378_3806927_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|3807007_3807580_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|3807598_3808510_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|3808583_3809552_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|3809674_3810748_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|3810752_3812573_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|3812649_3813600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|3813688_3814024_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|3814157_3814808_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|3814829_3816248_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|3816317_3817073_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|3817041_3817800_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|3817810_3818692_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|3818708_3819416_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|3819418_3820177_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|3820386_3822129_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|3822121_3822646_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|3822685_3823480_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|3823647_3824721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3824819_3825770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|3826021_3826234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|3826299_3826911_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|3827390_3827711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|3827703_3828402_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|3828416_3828638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3828655_3829606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|3830281_3830731_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|3830717_3831995_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|3831997_3833416_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|3833444_3834500_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|3834505_3834748_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|3834870_3835473_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|3835901_3836852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|3836869_3837517_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|3837526_3837778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3837840_3838323_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|3838324_3838525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|3838524_3838920_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|3838916_3839315_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|3839311_3839734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|3839741_3840242_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|3840496_3841015_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|3841024_3841354_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|3841371_3841662_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|3841687_3844300_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|3844309_3844669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|3844736_3845270_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|3845266_3845656_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|3845648_3849605_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 29
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	3855771	3911799	4128711	tRNA,transposase	Planktothrix_phage(50.0%)	51	NA	NA
WP_003814636.1|3855771_3857502_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|3857554_3857983_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|3857985_3858666_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|3858665_3859124_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|3859160_3860135_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|3860151_3861468_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|3861499_3861997_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|3862083_3862773_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|3862772_3863822_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|3863818_3864613_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|3864781_3865132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|3865107_3865665_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|3866589_3866808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3866794_3867745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|3870023_3871112_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|3871114_3872557_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|3872661_3873807_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|3873838_3874636_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|3874660_3876220_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|3876216_3878589_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|3878698_3879802_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|3879801_3880494_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|3880637_3881339_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|3881323_3881701_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|3882432_3883383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3883481_3884432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|3884418_3884562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|3884591_3885464_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|3885804_3886023_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|3886062_3887442_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|3887483_3888881_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|3888920_3890573_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|3890576_3891461_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|3891460_3892402_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|3892480_3894100_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|3894266_3895082_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|3895149_3895719_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3895719_3896670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|3897324_3898422_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|3898455_3899721_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|3899878_3900829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|3901072_3901663_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|3901678_3904123_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|3904242_3905214_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|3905345_3905870_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|3905829_3906780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3906878_3907829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|3908050_3910246_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|3910318_3910726_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|3910673_3910862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3910848_3911799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP015764	Bordetella pertussis strain VA-198, complete genome	4128711	4034388	4102364	4128711	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|4034388_4035405_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|4035601_4036585_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|4038183_4039572_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|4039602_4040592_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|4040702_4041935_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|4042216_4043017_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|4043039_4045271_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|4046058_4046505_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|4046526_4047273_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|4047416_4048394_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|4049027_4049639_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|4049632_4050850_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|4050990_4051941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|4051937_4052657_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|4052777_4054937_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|4055027_4055297_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|4055385_4055592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|4055590_4056118_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|4056136_4056916_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|4057083_4058100_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|4058172_4058664_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|4058674_4060390_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|4061553_4062504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|4062500_4064351_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|4064731_4065391_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|4065478_4065631_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|4065739_4065907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|4065918_4066599_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|4066880_4067597_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|4067611_4068913_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|4071057_4073946_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|4074169_4075522_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|4075550_4076072_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|4076068_4077523_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|4077557_4077806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|4077911_4078787_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|4078812_4079868_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|4079880_4080672_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|4080704_4082075_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|4083127_4083265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|4083251_4084202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|4084254_4084476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|4084635_4084848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|4084967_4086086_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|4086182_4086398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|4086591_4086843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|4086955_4087906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|4087902_4088286_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|4088340_4090158_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|4090304_4091132_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|4091177_4092158_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|4092154_4092367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|4092363_4093545_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|4093708_4094443_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|4094444_4097057_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|4097192_4099106_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|4099721_4100132_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|4100229_4101315_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|4101413_4102364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
