The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	259340	317664	4123407	tRNA,transposase	Klosneuvirus(13.33%)	51	NA	NA
WP_010930522.1|259340_260291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|260389_262990_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|263096_264101_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|264209_265550_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|265590_266619_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|266814_267360_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|267356_267917_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|268015_268966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|269003_269591_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|269608_269992_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|271351_272644_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|272778_273819_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|273916_274933_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|275200_275848_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|275973_276732_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|276806_277496_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|277513_278398_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|278394_279174_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|279200_279878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|280166_280919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|281037_282438_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|282461_282860_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|283035_283236_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|283374_284103_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|284236_285652_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|285655_286519_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|286531_287281_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|287463_289479_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|289460_290009_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|290085_290805_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|291948_292899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|293047_293386_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|293443_293605_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|293636_293837_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|294102_296676_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|296746_299320_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|301846_302335_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|302426_303578_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|303631_304453_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|304491_305721_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|305849_306290_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|306234_306414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|306400_307351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|307347_307821_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|307982_308921_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|308922_310131_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|310235_310742_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|310744_313606_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|313595_314561_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|314620_316615_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|316713_317664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	368913	428183	4123407	tRNA,protease,transposase	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|368913_369864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|369988_370798_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|370853_371012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|370998_371949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|373222_374440_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|375496_376399_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|376475_377348_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|377478_377847_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|377904_378951_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|379146_380403_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|380407_381745_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|381894_382851_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|382953_383886_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|384001_384322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|384323_384674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|384721_386296_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|386348_387293_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|387310_388141_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|388133_389768_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|389764_391120_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|392026_393604_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|393607_394882_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|394979_395354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|397069_398203_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|398240_398846_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|398842_399661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|399732_402357_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|402343_402598_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|402664_403246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|403549_403810_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|403975_404599_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|404598_405372_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|405368_406577_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|406602_407076_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|407149_408100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|408198_409149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|409247_410597_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|411362_412118_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|412210_415093_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|415415_415841_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|415868_417017_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|417013_417520_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|417526_418822_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|418862_420167_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|420168_420807_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|420809_421970_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|421996_423352_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|423355_424426_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|424564_424801_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|424888_425995_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|425960_427265_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|427283_428183_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 3
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	438423	482746	4123407	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|438423_439374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|439472_440423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|440409_440610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|440622_441708_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|441723_442485_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|442481_443405_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|443503_444028_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|444036_444780_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|444875_445115_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|445128_445281_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|445366_446857_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|446948_447887_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|447883_448060_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|448062_448725_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|450346_450490_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|450486_451461_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|451497_451641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|451627_452578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|452574_453849_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|453946_455146_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|455142_455796_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|455792_457229_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|457216_457576_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|458548_459499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|460544_462410_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|462667_464188_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|464275_464926_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|465874_467170_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|467191_468076_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|468174_469050_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|469039_469396_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|469469_470501_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|470630_470810_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|470907_471432_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|471442_472279_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|472391_472763_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|472759_473311_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|473326_475018_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|475066_475747_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|475994_476459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|476628_477558_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|477570_478218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|478291_480109_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|480192_481143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|481647_481809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|481795_482746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	512519	576888	4123407	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|512519_513470_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|513456_513648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|513691_514642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|514740_515706_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|515843_516743_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|519337_520825_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|520835_522032_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|522104_523424_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|523420_524296_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|524326_525496_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|525492_525807_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|525828_526551_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|526550_527369_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|527373_527901_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|527906_529172_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|529521_530661_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|530738_531611_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|532481_533432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|533391_534027_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|534386_535709_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|535937_536849_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|538273_538846_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|538885_540715_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|540677_541736_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|541773_542235_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|542319_543066_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|544556_547787_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|547853_549185_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|549437_549812_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|549914_551093_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|551103_551694_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|551804_552611_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|552636_553431_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|554431_555406_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|555564_556077_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|556233_557205_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|558949_559756_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|559752_560889_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|561004_561769_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|561882_562653_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|562737_563949_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|563997_564372_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|564472_565735_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|565731_566589_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|566761_567763_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|568214_569165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|570680_571880_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|572248_572485_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|572548_572716_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|572829_574725_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|574888_575839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|575937_576888_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	763356	824704	4123407	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|763356_764307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|764423_765143_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|765315_766302_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|766302_766785_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|766788_768072_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|768068_769007_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|769003_770713_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|770722_771970_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|773580_774870_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|776007_776781_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|777442_778186_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|778260_779001_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|779196_780033_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|780083_780854_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|780903_781956_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|781952_782579_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|782575_783622_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|783788_784805_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|784903_785854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|788594_789884_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|790002_790473_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|790483_791692_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|791838_792303_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|792326_793277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|794261_795035_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|795031_796030_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|796114_796891_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|797046_798714_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|799031_800156_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|800282_800906_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|800902_802804_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|802852_803647_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|803659_804661_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|804657_805164_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|805156_806005_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|806102_806645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|806688_807639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|807794_808121_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|808117_808402_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|808398_808878_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|808874_810503_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|810499_810844_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|810843_813777_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|814935_815886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|815984_816281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|816387_817305_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|817309_818023_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|818036_819008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|820727_821108_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|821111_822299_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|822737_823460_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|823753_824704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	845495	916649	4123407	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|845495_846446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|846998_848624_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|848673_849708_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|849710_851057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|851053_852568_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|852558_853569_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|854042_854984_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|854992_855961_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|857500_858469_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|858646_859636_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|859682_860441_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|860630_861368_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|861318_861480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|861466_862417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|862601_863384_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|863377_864079_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|864318_864921_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|866105_866261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|866247_867198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|867194_868751_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|868743_869517_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|869575_870526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|870607_871783_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|871796_873854_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|873850_874876_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|874887_876177_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|876199_877297_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|877293_878184_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|878180_880265_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|880296_881466_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|881507_882248_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|882247_883018_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930465.1|883873_884659_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|884685_886770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|886937_888893_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|889216_889717_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|889815_891342_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|891479_892367_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|892381_893335_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|893386_895477_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|895492_895879_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|898572_899376_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|900669_901572_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|901636_902413_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|902734_903784_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|903907_905578_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|905582_906377_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|906475_907426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|907445_908351_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|908428_909127_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|909286_910231_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|910240_911731_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|911727_912795_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|912858_914271_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|914456_915677_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|915698_916649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	1000849	1052015	4123407	tRNA,transposase	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|1000849_1001800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|1001898_1002669_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|1002665_1003337_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|1003333_1003975_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|1003987_1004908_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|1005068_1006229_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|1006270_1007221_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|1007819_1008044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|1008208_1009903_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|1010024_1010294_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|1010409_1010808_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|1010818_1011775_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|1011911_1012457_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|1012477_1014427_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|1014814_1015591_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|1015596_1015989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1016410_1017361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1017357_1018455_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|1018486_1019437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|1021213_1022455_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|1022466_1023240_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|1023266_1024217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|1024315_1025098_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|1025186_1026413_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|1027138_1028524_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|1028542_1029148_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|1029144_1031001_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|1030997_1031798_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|1031812_1033006_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|1033073_1034048_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|1034170_1035394_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|1035504_1037709_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|1038003_1038663_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|1038670_1038877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1039215_1039971_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|1039986_1040148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|1040241_1040757_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|1041029_1041347_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|1041534_1041783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|1042061_1043417_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|1043463_1044843_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|1044905_1045538_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|1045537_1047898_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|1047939_1048899_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_005015014.1|1049567_1049900_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|1050015_1050966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1051064_1052015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	1150310	1190979	4123407	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|1150310_1151261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|1151371_1151554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1151653_1152250_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|1152433_1153525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|1154024_1154435_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|1154493_1154835_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|1154840_1157258_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|1157270_1158293_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|1158367_1158727_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|1158742_1158940_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|1159275_1160226_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|1160212_1160374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|1160420_1160870_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|1160866_1161817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|1161803_1161950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1161927_1163376_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|1163490_1163772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|1163724_1163889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1163875_1164826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|1165070_1165784_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|1165906_1166134_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|1166428_1167067_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|1167139_1168210_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|1168206_1169157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|1169572_1170097_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|1170100_1170370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|1170568_1171630_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|1171713_1173348_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|1173349_1174153_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|1174181_1175141_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|1175144_1176659_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|1176695_1177700_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|1178131_1178602_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|1178637_1179249_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|1179279_1179903_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|1179983_1181516_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|1181550_1182792_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|1182835_1183867_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|1183863_1185033_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|1185026_1185707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|1185868_1186711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|1186873_1187845_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|1188016_1188895_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|1188917_1189988_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|1190028_1190979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	1246444	1319314	4123407	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|1246444_1246861_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|1246971_1247604_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|1247632_1248076_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|1248097_1249189_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|1249243_1250044_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|1250179_1250800_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|1250939_1251413_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1252552_1253503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|1253499_1261161_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|1261401_1265448_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|1265760_1266342_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|1266338_1267637_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|1267716_1268745_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_077075748.1|1268668_1269019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|1269005_1269956_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1269952_1270903_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|1271219_1271825_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|1271878_1273192_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|1273266_1273737_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|1273736_1274525_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|1274535_1276188_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|1276275_1277226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|1278387_1278894_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|1278890_1279655_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|1279670_1279955_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|1280019_1281009_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|1281180_1282110_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|1282081_1282768_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|1282801_1283347_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|1283391_1284657_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|1284653_1285556_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|1286737_1287682_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|1287776_1289294_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|1289335_1290964_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|1291071_1291953_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|1295065_1295440_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|1295464_1295803_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|1295846_1297481_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|1297519_1298866_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|1298973_1300395_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|1300464_1301049_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|1301151_1302102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|1302236_1303343_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|1303353_1304451_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|1304595_1305801_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|1305807_1306329_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|1306325_1306817_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|1306813_1307065_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|1307045_1307531_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|1307666_1311128_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|1311124_1312030_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|1312039_1312471_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|1312717_1313221_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|1313232_1314699_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|1314773_1315649_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|1315645_1316653_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|1317120_1317426_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|1317516_1318107_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|1318297_1319314_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	1322457	1389271	4123407	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|1322457_1323408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1323506_1324457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|1324453_1325248_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|1325279_1325984_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|1326058_1326859_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|1326855_1327263_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|1327259_1327901_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|1327893_1329915_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|1331154_1332486_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1332482_1333433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|1335139_1335406_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|1336113_1336452_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|1341008_1341611_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|1341707_1342997_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|1343054_1343786_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|1343782_1344586_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|1344582_1345671_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1345667_1346597_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|1346745_1347891_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|1347912_1348863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|1348880_1349039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|1349193_1353015_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|1353171_1353840_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|1353844_1355518_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|1355536_1356856_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|1356860_1359212_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|1359231_1361400_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|1361396_1366586_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|1366675_1366990_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|1367217_1367463_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|1367557_1368076_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|1368175_1369381_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|1369496_1370894_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|1371010_1371589_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|1371661_1373053_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|1373220_1374171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|1374451_1375072_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|1375068_1375482_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|1375478_1376522_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|1376577_1376766_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|1376775_1377540_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|1377630_1378287_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|1378378_1379137_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|1379162_1380764_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|1380964_1381969_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|1382069_1382333_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|1382450_1383227_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|1383817_1384768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1387151_1388264_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|1388320_1389271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	1419657	1513694	4123407	transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_005012067.1|1419657_1420608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|1420594_1420840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|1420728_1421625_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|1423902_1426128_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|1426292_1427381_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|1427337_1427991_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|1428038_1428836_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|1429367_1430318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1430398_1431547_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1431603_1432554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|1432540_1432759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|1432652_1432958_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|1432986_1433421_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|1433422_1434667_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|1434663_1435374_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|1435388_1436300_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_155120814.1|1436487_1436652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1436669_1437620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|1437711_1438116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|1438112_1438571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|1438577_1439486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|1439482_1440349_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|1440335_1441163_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|1441173_1442301_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|1443378_1444617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|1444658_1445921_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|1445927_1446680_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|1446731_1446917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|1447192_1447657_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|1447688_1448348_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|1448492_1450601_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|1450597_1451548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|1451651_1452272_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|1452375_1453116_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_065454007.1|1454250_1455375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|1455420_1455789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1456030_1456981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1458016_1458559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|1458751_1458958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1458944_1459895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|1459891_1460857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|1460926_1461763_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|1462239_1463385_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|1463446_1464397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|1464589_1465372_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|1465385_1466135_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|1466162_1467509_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|1467534_1468464_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|1468579_1469485_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|1469502_1470702_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|1470774_1471467_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|1471515_1473942_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|1473986_1474937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698394.1|1474954_1475101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809026.1|1475153_1475522_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|1475808_1476735_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|1476778_1477789_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|1477785_1478220_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|1479345_1480134_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|1480143_1480926_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|1480929_1482021_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|1482126_1483602_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|1483743_1484292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|1484307_1484769_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|1484869_1485859_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|1486157_1486859_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|1486897_1488271_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|1488309_1489596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|1490482_1491385_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|1491332_1492553_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|1492549_1493059_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|1493048_1493744_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|1493814_1494684_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930208.1|1495033_1495984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|1496844_1497534_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|1498310_1499273_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|1499276_1500137_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|1500130_1500523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486092.1|1500553_1501726_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_014486094.1|1503177_1503975_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|1504008_1504788_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486096.1|1504816_1505689_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003818698.1|1505710_1506460_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|1506467_1507325_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|1507365_1507929_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|1507959_1508256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|1508336_1509140_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818702.1|1509160_1510357_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247599.1|1510359_1511361_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|1511713_1511884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|1511978_1512641_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1512743_1513694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	1844342	1898083	4123407	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_010929956.1|1844342_1845293_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|1845697_1846342_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|1846366_1846951_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|1847051_1847669_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|1847671_1849387_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|1849383_1849692_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|1849708_1850344_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|1850370_1850673_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|1850773_1851628_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|1851815_1852040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|1852209_1852482_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|1852899_1853307_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|1853676_1854471_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|1854571_1855807_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|1855875_1856892_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|1856888_1858280_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|1858276_1859473_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|1859469_1861008_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|1861004_1862264_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|1864204_1865155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|1865141_1865318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|1865921_1867016_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|1867008_1868343_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|1868296_1868980_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|1869005_1870169_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|1870165_1871167_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|1871166_1872039_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|1872035_1872785_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|1872781_1873573_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|1873569_1874709_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|1875017_1875770_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|1875803_1876586_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|1876589_1876979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|1878118_1878982_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|1879017_1880106_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1880102_1881053_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|1881039_1881453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|1881406_1884385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|1885311_1886190_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930730.1|1888138_1889089_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|1889085_1889553_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|1889595_1890366_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|1890386_1891187_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|1891197_1892607_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|1892701_1893487_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|1893726_1894743_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|1894850_1895243_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|1895380_1896061_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|1896065_1897064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|1897132_1898083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	1904238	1963538	4123407	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|1904238_1906002_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|1906113_1906992_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|1907104_1907920_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|1907923_1908175_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|1908259_1909276_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|1909606_1909828_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|1912188_1913106_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|1913603_1914812_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|1914891_1916463_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|1916580_1917516_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|1917704_1918649_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|1918717_1918933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|1919216_1924934_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|1924939_1926067_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|1926122_1926749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|1927020_1928037_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|1928132_1928843_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|1928839_1929829_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|1929960_1931556_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|1931558_1932296_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|1932451_1933324_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|1933592_1934813_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|1934809_1935469_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|1935540_1936173_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|1936202_1936721_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|1936731_1937841_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|1937887_1938742_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|1938743_1939646_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1940868_1941819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|1943575_1944565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|1944740_1945529_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|1945525_1946557_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|1946575_1947139_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|1947194_1948715_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|1948978_1949683_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|1949690_1950428_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|1950533_1950908_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|1950950_1952240_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|1952236_1953406_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|1953402_1954242_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|1954301_1955237_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|1955249_1956200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|1956298_1957261_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|1957292_1957652_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|1957776_1958679_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|1958680_1960453_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|1960487_1961264_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|1962587_1963538_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	1978476	2036549	4123407	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|1978476_1979427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|1979555_1980689_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|1980732_1981638_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|1981640_1983341_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|1983337_1984258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|1984265_1985243_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|1985301_1986336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|1988310_1988547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|1988673_1989537_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|1989625_1990447_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|1990526_1991264_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|1991260_1992253_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|1992366_1993029_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|1993073_1994222_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|1996545_1997496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|1997836_1998787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1998885_1999836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|2000132_2000630_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|2000672_2002448_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|2002494_2003322_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|2003328_2004063_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|2005232_2006027_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|2006316_2006907_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|2006940_2008269_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|2008343_2009489_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|2009600_2010599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|2010561_2010996_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|2012512_2013397_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|2013393_2014599_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|2014595_2015456_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|2015568_2017359_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|2017399_2018065_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|2018065_2018374_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|2018539_2019826_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|2021259_2022210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|2024161_2025376_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|2025481_2026471_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|2026467_2027076_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|2027088_2027718_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|2027714_2028335_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|2028366_2029158_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|2030000_2030465_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|2030483_2031410_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|2031463_2032750_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|2033680_2034553_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|2034549_2035500_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|2035598_2036549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	2046349	2117690	4123407	tRNA,transposase	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
WP_010929957.1|2046349_2047624_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|2048346_2049297_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2049395_2050346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929955.1|2050444_2052820_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929954.1|2052839_2053676_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010929953.1|2053672_2054470_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_050854280.1|2054466_2056656_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929951.1|2056707_2057694_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929950.1|2057775_2059578_-	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929949.1|2059835_2061953_+	crotonase	NA	NA	NA	NA	NA
WP_076879537.1|2061949_2063167_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929947.1|2063188_2063677_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929946.1|2063826_2065659_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929945.1|2065856_2066837_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929944.1|2066893_2067913_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815697.1|2067976_2068870_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929943.1|2069268_2070048_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929942.1|2070047_2072189_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929941.1|2072336_2073281_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929940.1|2073364_2074348_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003815690.1|2074712_2075987_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA	NA
WP_010929939.1|2076017_2076446_+	RidA family protein	NA	NA	NA	NA	NA
WP_003815682.1|2076456_2077131_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929938.1|2077123_2078296_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_010929937.1|2078428_2079448_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929936.1|2079628_2080819_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|2080832_2081963_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929934.1|2082006_2083728_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_003815672.1|2083846_2084809_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815671.1|2084915_2085887_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247835.1|2086505_2087174_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815668.1|2087170_2087578_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010929577.1|2087574_2088525_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|2090969_2091704_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|2092113_2092293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|2092483_2093797_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|2093812_2095324_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|2095320_2096526_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|2096721_2097699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|2097791_2098286_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|2098415_2099474_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|2099470_2101090_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_077274092.1|2101049_2101358_-	GtrA family protein	NA	NA	NA	NA	NA
WP_010929784.1|2101277_2102381_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|2102377_2102833_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|2102838_2103762_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|2103851_2104511_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|2104507_2105422_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|2105510_2106461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879611.1|2106539_2107517_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|2107977_2108577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807867.1|2108645_2109638_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486054.1|2109687_2111277_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_014486053.1|2111317_2112214_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486052.1|2112210_2113917_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_003819219.1|2114021_2115263_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486051.1|2115259_2116030_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_014486050.1|2116078_2116780_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486049.1|2116706_2117690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	2187512	2303182	4123407	tRNA,protease,transposase	Bacillus_phage(12.5%)	105	NA	NA
WP_005013747.1|2187512_2188463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302769.1|2188449_2188599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814960.1|2188585_2189314_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_023852939.1|2189320_2190589_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|2190585_2191419_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|2191455_2192196_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|2192315_2193491_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|2193487_2194441_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|2194454_2194856_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_019248876.1|2194848_2195526_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|2195541_2195706_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|2195822_2196671_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|2196667_2197321_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|2197337_2198621_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|2198860_2200486_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|2200579_2200981_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|2201005_2201440_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|2201441_2203091_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|2203131_2204301_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|2204303_2205167_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|2208530_2209235_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|2209228_2210023_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|2210019_2210985_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|2210988_2211909_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|2212005_2213169_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|2213391_2214282_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|2214285_2214789_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|2214831_2215830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|2215826_2216777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|2216865_2217153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154299516.1|2217199_2217358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2217344_2218295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|2218354_2218915_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|2220417_2221299_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|2221412_2222615_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|2222743_2224603_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|2224680_2225490_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|2225560_2226562_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|2226593_2227454_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|2227653_2228658_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|2228654_2230241_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|2230249_2231176_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|2231198_2231825_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|2231923_2232874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|2232870_2234007_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|2234060_2234837_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|2234861_2235320_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|2235459_2236101_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|2236165_2237548_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|2237567_2238422_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|2238580_2239192_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|2239201_2239651_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|2240169_2240310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|2240317_2240479_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077068974.1|2240554_2240770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2240756_2241707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|2242750_2243029_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_085964336.1|2244171_2244747_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929715.1|2244782_2246462_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|2246458_2248210_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|2248206_2248332_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|2248345_2249500_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010929713.1|2249515_2251135_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|2251218_2251764_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2252323_2253274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|2254004_2254985_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|2254998_2256123_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|2256130_2257885_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|2257991_2258891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|2258955_2259939_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|2260074_2261055_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|2261071_2262463_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|2262614_2263151_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|2263081_2264467_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|2264609_2265248_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|2265334_2267224_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|2267220_2268162_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|2268267_2269317_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|2269569_2270271_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|2270267_2270966_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|2270966_2272322_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|2272318_2272810_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|2272828_2273785_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|2275195_2277298_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|2277468_2278512_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|2278555_2279299_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|2280320_2280731_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|2281680_2282478_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_153302767.1|2282416_2282590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930742.1|2282576_2283527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2283523_2284474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2284560_2285511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|2285625_2286627_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|2286717_2287284_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|2287602_2289516_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|2289557_2290988_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|2291100_2292513_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|2292529_2293225_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_127013037.1|2293256_2293457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2293443_2294394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|2294418_2295318_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|2295472_2296021_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|2296059_2296779_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|2296850_2299793_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|2300386_2303182_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 18
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	2343595	2411420	4123407	tRNA,transposase	Bacillus_phage(22.22%)	60	NA	NA
WP_010929591.1|2343595_2344546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068973.1|2344532_2344712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|2344752_2345229_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|2345310_2345994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|2346018_2347626_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|2347674_2348304_-	LysE family transporter	NA	NA	NA	NA	NA
WP_029443820.1|2348337_2349720_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_003815889.1|2350050_2350680_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|2350657_2351560_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|2353003_2353954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|2354512_2356075_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|2356071_2356707_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|2356935_2357958_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|2358123_2358900_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|2359063_2359762_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|2359773_2361084_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|2361139_2361817_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|2361813_2363211_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|2363316_2363778_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929651.1|2363861_2365082_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929650.1|2365133_2366009_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|2366110_2366542_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|2366566_2367295_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|2367291_2368272_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|2369038_2369821_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446330.1|2369987_2370911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|2370982_2371741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|2371759_2372203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|2372223_2373036_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|2373041_2373974_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|2373957_2375181_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|2375268_2376051_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|2376103_2380066_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|2380812_2382321_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_153302766.1|2382609_2382753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2382739_2383690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|2384956_2385835_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|2385862_2386165_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|2386257_2387697_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|2387695_2388343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|2388769_2390470_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|2390560_2391814_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|2392707_2393097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929637.1|2393093_2394104_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|2394940_2395774_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|2395770_2396676_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|2396774_2397725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|2397825_2398647_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|2398752_2399793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|2399835_2401128_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|2401138_2402014_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|2402010_2402811_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|2402886_2403903_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|2404185_2404503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|2404593_2404941_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|2405228_2406911_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|2406920_2407604_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|2407665_2408295_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|2408376_2409570_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|2410469_2411420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	2439243	2475184	4123407	transposase	Sphingobium_phage(33.33%)	33	NA	NA
WP_041166334.1|2439243_2440188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2440262_2441213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|2441209_2442619_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_076879597.1|2442817_2443567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807805.1|2443568_2443820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|2443908_2444490_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|2444521_2445142_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|2445303_2447211_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|2448403_2448718_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2448811_2449762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|2450183_2451365_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|2451994_2453266_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|2453300_2454359_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019248465.1|2454462_2454780_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|2454792_2455374_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929598.1|2455568_2456405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929597.1|2456828_2457770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929596.1|2457953_2458373_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|2458372_2459599_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_005012808.1|2460399_2461350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929594.1|2461443_2462343_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|2462422_2463184_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|2463180_2463870_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|2463894_2464485_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|2464490_2465225_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_029443813.1|2466456_2467713_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929591.1|2467755_2468706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|2468841_2469456_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|2469452_2470700_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003815255.1|2471869_2472763_-	membrane protein	NA	NA	NA	NA	NA
WP_003815265.1|2472890_2473127_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815267.1|2473098_2473734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2474233_2475184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	2529513	2596676	4123407	tRNA,transposase	Planktothrix_phage(37.5%)	59	NA	NA
WP_010931687.1|2529513_2530866_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_003816050.1|2530982_2532569_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931686.1|2532588_2533563_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931685.1|2533559_2534480_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931684.1|2534506_2535508_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	8.9e-15
WP_019248556.1|2535504_2536521_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_019248557.1|2536578_2537778_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003816037.1|2537907_2538831_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931682.1|2538874_2539918_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931681.1|2539919_2540735_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.4	6.1e-30
WP_010927255.1|2540731_2541613_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929556.1|2541673_2543122_-	catalase	NA	A0A2K9L0T1	Tupanvirus	40.8	3.2e-106
WP_153302799.1|2543105_2543258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2543244_2544195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853477.1|2544741_2545980_-	CoA transferase	NA	NA	NA	NA	NA
WP_003819309.1|2546061_2546841_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931679.1|2546837_2547845_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003808010.1|2548018_2548705_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853488.1|2548785_2549547_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_010931677.1|2549543_2550368_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931676.1|2550369_2551338_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931675.1|2551360_2552773_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931674.1|2552812_2553967_-	CoA transferase	NA	NA	NA	NA	NA
WP_077274100.1|2553956_2554979_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930363.1|2554867_2555818_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996063.1|2555804_2555981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815086.1|2556000_2556774_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003815084.1|2556863_2557673_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931673.1|2557683_2558760_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_010931672.1|2562611_2563259_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010927126.1|2563470_2564379_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003815073.1|2564375_2565047_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_003815070.1|2565365_2566382_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815068.1|2566501_2567692_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815066.1|2567693_2568794_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815064.1|2568848_2569589_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_010931671.1|2569709_2570732_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815061.1|2570731_2571199_+	membrane protein	NA	NA	NA	NA	NA
WP_010931670.1|2571217_2572744_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_010931669.1|2572730_2574188_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_003815055.1|2574285_2574474_+	DUF3460 family protein	NA	NA	NA	NA	NA
WP_003815053.1|2574500_2575388_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815051.1|2575432_2576275_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815049.1|2576372_2576720_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815047.1|2576802_2577546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820519.1|2577786_2578626_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_019247320.1|2578628_2579279_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003815038.1|2579311_2580073_+	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931666.1|2580253_2581504_+	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010931665.1|2581500_2584569_+	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003815032.1|2584565_2587673_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_023994937.1|2587669_2589163_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010929577.1|2589159_2590110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2590208_2591159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2591257_2592208_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815027.1|2592308_2593271_-	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010931663.1|2593263_2594130_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_010931662.1|2594329_2595556_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931661.1|2595725_2596676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	2781487	2855831	4123407	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|2781487_2782438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|2782434_2783625_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|2783746_2784511_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|2784597_2785701_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|2785892_2786909_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|2787190_2787679_+	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|2789022_2789703_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|2789764_2790616_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817654.1|2790612_2791488_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|2791513_2792407_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|2792418_2794308_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|2794644_2798418_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|2798414_2799365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302770.1|2799351_2799519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|2799673_2800366_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|2800739_2801240_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|2801346_2802267_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|2802283_2802760_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|2802853_2804704_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|2804759_2805518_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|2805545_2807018_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|2807052_2807832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|2807844_2808678_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815975.1|2808686_2809460_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|2809456_2810521_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|2810672_2813300_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|2813363_2815985_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|2816912_2817371_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|2817649_2819893_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|2820089_2822114_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|2822237_2823200_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|2823411_2824551_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|2824573_2825539_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|2825734_2826925_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|2826938_2827184_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|2827212_2829234_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|2829280_2830888_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|2830988_2832158_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|2835039_2835990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|2836013_2837072_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|2837146_2837521_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2838075_2839026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995443.1|2839012_2839153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929833.1|2840582_2841428_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|2841515_2842679_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|2843097_2844069_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|2844107_2845535_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|2845654_2846446_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|2846564_2849018_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_003816023.1|2849112_2850228_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929554.1|2850224_2851634_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|2852039_2852174_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|2852269_2852641_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|2852637_2852910_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|2852958_2854650_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|2854880_2855831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	3160114	3221300	4123407	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|3160114_3161065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|3161540_3162431_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|3162427_3163249_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|3163442_3163934_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|3163952_3165026_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|3165072_3166176_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|3166251_3166872_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|3166892_3167402_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|3167456_3167708_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|3167771_3168905_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|3168912_3169299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|3169295_3171815_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|3172243_3172582_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|3172578_3173085_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|3173146_3173947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|3174057_3174999_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|3175092_3176628_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|3178307_3180158_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|3180161_3180995_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|3180994_3181936_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|3182187_3183183_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808542.1|3185896_3186805_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|3186859_3187825_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|3187899_3189561_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|3189557_3190343_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|3190309_3190474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3190491_3191442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|3192140_3192524_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|3192581_3193184_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|3193201_3193603_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|3193736_3194630_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|3194626_3195208_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|3196002_3196737_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|3196777_3197827_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|3197974_3198553_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|3198939_3199917_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|3200010_3204405_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|3204605_3205454_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|3205612_3206425_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|3206480_3207431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|3207417_3207582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|3207529_3208330_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|3208391_3208775_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|3208786_3210220_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|3210426_3210756_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|3210758_3211427_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|3211690_3212611_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|3212657_3212870_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|3212892_3213315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|3213331_3214432_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|3214528_3216046_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|3216121_3216961_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|3216982_3217864_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|3217945_3219040_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|3219333_3220284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|3220358_3221300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	3226618	3272815	4123407	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(17.39%)	52	NA	NA
WP_003814219.1|3226618_3227650_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|3227690_3227930_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|3227999_3229589_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|3229588_3230137_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|3230217_3230790_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|3230808_3231720_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|3231793_3232762_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|3232884_3233958_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|3233962_3235783_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|3235859_3236810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|3236898_3237234_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|3237367_3238018_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|3238039_3239458_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|3239527_3240283_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|3240251_3241010_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|3241020_3241902_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|3241918_3242626_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|3242628_3243387_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|3243596_3245339_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|3245331_3245856_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|3245895_3246690_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|3246857_3247931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3248029_3248980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|3249231_3249444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|3249509_3250121_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|3250600_3250921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|3250913_3251612_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|3251626_3251848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3251865_3252816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|3253491_3253941_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|3253927_3255205_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|3255207_3256626_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|3256654_3257710_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|3257715_3257958_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|3258080_3258683_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|3259111_3260062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|3260079_3260727_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|3260736_3260988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3261050_3261533_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|3261534_3261735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|3261734_3262130_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|3262126_3262525_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|3262521_3262944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|3262951_3263452_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|3263706_3264225_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|3264234_3264564_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|3264581_3264872_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|3264897_3267510_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|3267519_3267879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|3267946_3268480_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|3268476_3268866_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|3268858_3272815_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 25
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	3278981	3332911	4123407	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|3278981_3280712_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|3280764_3281193_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|3281195_3281876_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|3281875_3282334_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|3282370_3283345_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|3283361_3284678_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|3284709_3285207_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|3285293_3285983_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|3285982_3287032_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|3287028_3287823_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|3287991_3288342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|3288317_3288875_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|3289799_3290018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852617.1|3290004_3290955_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|3293233_3294322_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|3294324_3295767_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|3295871_3297017_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|3297048_3297846_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|3297870_3299430_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|3299426_3301799_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|3301908_3303012_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|3303011_3303704_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|3303847_3304549_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|3304533_3304911_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|3305642_3306593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|3306579_3306723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|3306752_3307625_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|3307965_3308184_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|3308223_3309603_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|3309644_3311042_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|3311081_3312734_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|3312737_3313622_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|3313621_3314563_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|3314641_3316261_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|3316427_3317243_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|3317310_3317880_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3317880_3318831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|3319485_3320583_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|3320616_3321882_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|3322039_3322990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|3323233_3323824_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|3323839_3326284_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|3326403_3327375_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|3327506_3328031_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|3327990_3328941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|3329162_3331358_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|3331430_3331838_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|3331785_3331974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3331960_3332911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	3455500	3523476	4123407	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|3455500_3456517_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|3456713_3457697_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3459295_3460684_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|3460714_3461704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|3461814_3463047_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|3463328_3464129_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|3464151_3466383_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|3467170_3467617_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|3467638_3468385_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|3468528_3469506_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|3470139_3470751_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|3470744_3471962_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|3472102_3473053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|3473049_3473769_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|3473889_3476049_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|3476139_3476409_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|3476497_3476704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|3476702_3477230_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|3477248_3478028_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|3478195_3479212_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|3479284_3479776_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|3479786_3481502_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|3482665_3483616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|3483612_3485463_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|3485843_3486503_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|3486590_3486743_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|3486851_3487019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|3487030_3487711_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|3487992_3488709_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|3488723_3490025_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|3492169_3495058_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|3495281_3496634_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|3496662_3497184_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|3497180_3498635_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|3498669_3498918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|3499023_3499899_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|3499924_3500980_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|3500992_3501784_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|3501816_3503187_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|3504239_3504377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3504363_3505314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|3505366_3505588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|3505747_3505960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3506079_3507198_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|3507294_3507510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|3507703_3507955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|3508067_3509018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|3509014_3509398_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|3509452_3511270_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|3511416_3512244_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|3512289_3513270_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|3513266_3513479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|3513475_3514657_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|3514820_3515555_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|3515556_3518169_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|3518304_3520218_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|3520833_3521244_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|3521341_3522427_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|3522525_3523476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	3546654	3616921	4123407	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|3546654_3547605_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|3547685_3548597_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|3548657_3549803_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|3549822_3550737_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|3550808_3551558_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|3551557_3552487_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|3552730_3554557_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|3554639_3555281_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|3555470_3556505_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|3558341_3559406_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|3560203_3561112_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|3562599_3563874_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|3564027_3564408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|3564415_3565288_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|3565593_3565974_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|3566184_3566910_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|3567005_3567956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3568060_3569110_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|3569247_3570264_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|3571772_3572345_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|3572404_3573136_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|3573187_3574105_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|3574912_3578092_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|3578088_3579471_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|3579540_3579792_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|3579937_3580588_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|3580738_3582853_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|3582928_3583780_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|3583776_3584403_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|3584399_3586154_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|3586446_3589152_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|3589164_3590826_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|3590838_3592629_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|3592850_3594026_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|3594068_3595019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|3595117_3595858_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|3596052_3598089_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|3598106_3599117_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|3599234_3600428_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3600457_3601231_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|3601227_3602418_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|3602443_3603382_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|3603378_3605727_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|3605881_3606589_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|3606626_3607760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|3607852_3608005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|3608036_3608585_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|3608603_3609089_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|3609266_3610205_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|3610207_3610525_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|3610570_3611515_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|3613195_3613846_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|3613899_3614235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3614231_3615092_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|3615108_3615390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|3615463_3615727_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|3615970_3616921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	3629139	3686521	4123407	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|3629139_3630156_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|3630986_3631994_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|3631990_3633634_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|3633630_3634533_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|3634658_3635132_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|3635121_3636144_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|3636140_3637568_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|3638505_3639522_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|3639854_3640790_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|3640839_3642720_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|3642786_3643131_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|3643275_3644412_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|3644408_3645482_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|3645639_3647076_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|3647166_3647808_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|3648143_3649160_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|3649492_3652240_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|3652306_3653728_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|3653991_3654708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|3654792_3655110_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|3655150_3655564_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|3655565_3655925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|3655967_3657512_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|3657595_3658426_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|3658460_3659615_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|3659657_3660530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|3660646_3662935_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|3664141_3664606_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|3664632_3665583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|3665600_3665738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|3665950_3666727_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|3666771_3667629_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|3667650_3668667_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|3668801_3669842_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|3670036_3672118_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|3672353_3673847_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|3674077_3674872_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|3675092_3676451_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|3676447_3677290_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|3677308_3679195_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|3679432_3680065_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|3680083_3680686_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|3680689_3680851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3680837_3681788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|3682590_3683391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|3683434_3684421_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|3684560_3685574_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|3685570_3686521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	3721872	3787455	4123407	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_145926315.1|3721872_3723669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|3723668_3724637_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|3724706_3725552_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|3725619_3726174_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|3726220_3727171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|3727269_3727902_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|3728065_3730348_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|3730502_3733199_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|3733324_3733813_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|3736223_3739094_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|3739139_3740354_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|3740583_3742011_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|3742051_3743200_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|3743212_3743971_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|3744058_3744961_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3744957_3745908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|3746037_3747021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|3747075_3747798_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|3749276_3750632_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|3750712_3753088_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|3753252_3755328_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|3755389_3756190_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|3756291_3757254_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|3757241_3757997_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|3758104_3759742_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|3759809_3760547_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|3760649_3761225_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|3761397_3761934_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|3761936_3762281_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|3762296_3763142_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|3763180_3764560_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|3764637_3765519_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|3765617_3766568_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|3766564_3766975_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|3767082_3767937_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|3767929_3768892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|3768937_3770062_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|3770173_3771046_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|3771170_3771950_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|3772103_3773525_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|3773959_3775657_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|3775685_3775808_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|3775883_3776825_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|3777151_3777898_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|3777905_3778832_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|3778953_3779871_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|3779910_3780864_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|3780888_3781467_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|3783140_3783749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|3783826_3784180_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|3784263_3785253_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|3785249_3785438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|3785455_3786406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|3786504_3787455_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	3950020	4016520	4123407	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|3950020_3950971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|3951036_3951216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|3951332_3952055_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|3952074_3953220_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|3954127_3955078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|3955265_3956468_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|3956464_3957223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|3957616_3958249_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|3959204_3961805_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|3961792_3965212_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|3965219_3966125_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|3966263_3966842_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|3966838_3967750_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|3967763_3968444_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|3968645_3970685_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|3970703_3971690_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|3971715_3972513_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|3972509_3973703_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|3973699_3974662_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|3974679_3975720_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|3975707_3976316_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|3977904_3978900_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|3978919_3980098_+	mandelate racemase	NA	NA	NA	NA	NA
WP_003811401.1|3980108_3981026_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|3981081_3982032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|3982130_3982901_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|3982897_3983578_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|3983644_3984433_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|3984679_3985696_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|3986001_3987156_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|3991661_3992144_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|3992161_3992452_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|3992578_3993289_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|3993472_3993880_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|3993892_3994312_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|3994359_3995064_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|3995129_3996551_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|3996589_3997354_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|3997397_3998183_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|3998182_3998872_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|3998874_4000008_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|4000025_4001048_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|4001117_4002764_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|4002797_4004330_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|4004408_4006229_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|4006349_4007969_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|4008147_4009590_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|4009806_4010823_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|4010869_4011658_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|4011680_4011950_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|4011966_4012758_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|4012769_4013111_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|4013121_4013622_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|4013614_4014625_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|4014627_4015200_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|4015569_4016520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP015763	Bordetella pertussis strain VA-52, complete genome	4123407	4044691	4083281	4123407	protease,transposase	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|4044691_4046026_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|4046078_4048415_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|4048540_4049104_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|4049112_4050204_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|4050275_4050731_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|4050731_4051526_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|4051522_4052704_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|4052690_4053296_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|4053292_4054066_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|4054077_4054905_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|4055066_4057430_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|4057497_4058217_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|4058340_4058766_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|4058800_4059751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|4059868_4060795_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|4060860_4062018_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|4061998_4062466_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|4062613_4063564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|4063580_4064015_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|4064004_4064355_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|4064551_4065706_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|4065702_4066875_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|4066922_4067816_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|4067861_4068299_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|4068358_4069048_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|4069057_4070008_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|4070106_4071057_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|4071155_4072139_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|4072401_4073499_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|4073509_4076752_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|4077773_4078418_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|4078428_4079328_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|4079375_4080461_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|4080457_4082152_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|4082185_4082344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|4082330_4083281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
