The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	27282	70035	4113555	transposase,tRNA	Synechococcus_phage(50.0%)	43	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_100050271.1|58465_59101_+	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64066_64384_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	77633	136107	4113555	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	164892	225402	4113555	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169126_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174134_174314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_077085655.1|194404_195355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195400_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207169_208219_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208215_209040_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	233334	286922	4113555	transposase,protease,tRNA	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233334_234285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236255_236429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236367_237165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240333_241377_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241547_243650_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251621_253511_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253597_254236_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254378_255764_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265571_266522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274098_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278075_278291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278535_278676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280423_281278_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	390854	448362	4113555	transposase	Orpheovirus(14.29%)	51	NA	NA
WP_005012067.1|390854_391805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391791_391959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391941_392859_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392855_393104_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393100_394306_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394378_395374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395396_396617_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396613_397258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398988_399798_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400015_401056_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401024_401168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401154_402138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402064_402766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402814_403585_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403581_404823_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486053.1|406629_407526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407566_409156_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409205_410198_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410266_410866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411326_412304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412382_413333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413421_414336_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414332_414992_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415081_416005_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416010_416466_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416462_417566_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_077274092.1|417485_417794_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417753_419373_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419369_420428_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420557_421052_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421144_422122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422317_423523_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423519_425031_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425046_426360_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426550_426730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427139_427874_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430318_431269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431400_431799_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432209_432680_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432768_433113_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433212_434613_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436401_436920_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437030_437786_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437981_439214_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439206_439992_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440058_441030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441040_442018_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442143_443316_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443342_444371_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444436_445630_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447411_448362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	590416	651607	4113555	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590416_591367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591842_592733_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592729_593551_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593750_594242_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594260_595334_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595380_596484_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596559_597180_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597200_597710_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597764_598016_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598079_599213_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599220_599607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599603_602123_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602551_602890_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602886_603393_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603454_604255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604365_605307_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605400_606936_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608615_610466_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610469_611303_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611302_612244_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|612495_613491_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613608_615897_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616203_617112_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617166_618132_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618206_619868_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|619864_620650_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620798_621749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622447_622831_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622888_623491_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623508_623910_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624043_624937_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624933_625515_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626309_627044_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627084_628134_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628281_628860_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629246_630224_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630317_634712_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634912_635761_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635919_636732_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636787_637738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|637724_637889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|637836_638637_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638698_639082_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639093_640527_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640733_641063_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|641065_641734_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641997_642918_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642964_643177_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643199_643622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|643638_644739_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644835_646353_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646428_647268_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647289_648171_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648252_649347_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649640_650591_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650665_651607_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	656925	703118	4113555	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(17.39%)	48	NA	NA
WP_003814219.1|656925_657957_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657997_658237_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658306_659896_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659895_660444_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814230.1|662098_663067_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663189_664263_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664267_666088_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_033446132.1|667202_667538_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667671_668322_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668343_669762_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669831_670587_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670555_671314_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671324_672206_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672222_672930_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672932_673691_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673900_675643_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675635_676160_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676199_676994_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|678332_679283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|679534_679747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679812_680424_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|680903_681224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|681216_681915_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|681929_682151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682168_683119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|683794_684244_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|684230_685508_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685510_686929_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686957_688013_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688018_688261_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688383_688986_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689414_690365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|690382_691030_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|691039_691291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691353_691836_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691837_692038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692037_692433_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692429_692828_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692824_693247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|693254_693755_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694009_694528_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694537_694867_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694884_695175_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695200_697813_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697822_698182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698249_698783_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698779_699169_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699161_703118_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	709284	763215	4113555	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|709284_711015_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711067_711496_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711498_712179_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712178_712637_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712673_713648_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713664_714981_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715012_715510_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715596_716286_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716285_717335_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717331_718126_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718294_718645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718620_719178_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|720102_720321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|720307_721258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|723536_724625_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724627_726070_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726174_727320_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727351_728149_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728173_729733_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729729_732102_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732211_733315_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733314_734007_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734150_734852_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734836_735214_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735945_736896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|736882_737026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|737055_737928_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738268_738487_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738526_739906_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739947_741345_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741384_743037_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743040_743925_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743924_744866_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744944_746564_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746730_747546_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747613_748183_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748183_749134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749789_750887_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750920_752186_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752343_753294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753537_754128_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754143_756588_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756707_757679_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757810_758335_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758294_759245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759466_761662_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761734_762142_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|762089_762278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|762264_763215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	885800	953775	4113555	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|885800_886817_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887013_887997_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889595_890984_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891014_892004_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892114_893347_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893628_894429_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894451_896683_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897470_897917_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897938_898685_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898828_899806_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900439_901051_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901044_902262_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902402_903353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903349_904069_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904189_906349_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906439_906709_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906797_907004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907002_907530_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907548_908328_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908495_909512_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909584_910076_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910086_911802_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912965_913916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|913912_915763_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916143_916803_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|916890_917043_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|917151_917319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917330_918011_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918292_919009_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919023_920325_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922469_925358_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925581_926934_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926962_927484_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927480_928935_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928969_929218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929323_930199_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930224_931280_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931292_932084_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932116_933487_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|934539_934677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|934663_935614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935666_935888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936047_936260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936379_937498_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937594_937810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938003_938255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938367_939318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939314_939698_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|939752_941570_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941716_942544_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942589_943570_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943566_943779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943775_944957_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945120_945855_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945856_948469_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948603_950517_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951132_951543_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951640_952726_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952824_953775_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	976953	1047223	4113555	transposase	Streptococcus_phage(14.29%)	56	NA	NA
WP_005012067.1|976953_977904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977984_978896_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978956_980102_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980121_981036_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981107_981857_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981856_982786_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983029_984856_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984938_985580_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985769_986804_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988640_989705_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990502_991411_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992903_994178_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994331_994712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994719_995592_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995897_996278_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996488_997214_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997309_998260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998364_999414_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999551_1000568_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002076_1002649_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002708_1003440_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003491_1004409_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005216_1008396_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008392_1009775_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009844_1010096_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1010241_1010892_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011042_1013157_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013232_1014084_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014080_1014707_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014703_1016458_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016750_1019456_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930129.1|1021140_1022931_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023152_1024328_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024370_1025321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025419_1026160_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026354_1028391_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028408_1029419_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029536_1030730_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030759_1031533_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031529_1032720_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032745_1033684_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033680_1036029_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1036183_1036891_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036928_1038062_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038154_1038307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038338_1038887_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038905_1039391_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039568_1040507_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040509_1040827_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040872_1041817_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043497_1044148_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044201_1044537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044533_1045394_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045410_1045692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045765_1046029_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046272_1047223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	1059441	1116823	4113555	holin,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_010931363.1|1059441_1060458_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061288_1062296_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062292_1063936_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1063932_1064835_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064960_1065434_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065423_1066446_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066442_1067870_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068807_1069824_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070156_1071092_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071141_1073022_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073088_1073433_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073577_1074714_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074710_1075784_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075941_1077378_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077468_1078110_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078445_1079462_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082608_1084030_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084293_1085010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085094_1085412_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085452_1085866_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085867_1086227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086269_1087814_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087897_1088728_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1088762_1089917_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089959_1090832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090948_1093237_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094443_1094908_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094934_1095885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096252_1097029_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097073_1097931_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097952_1098969_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099103_1100144_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100338_1102420_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102655_1104149_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104379_1105174_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105394_1106753_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106749_1107592_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107610_1109497_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1109734_1110367_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110385_1110988_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1110991_1111153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1111139_1112090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1112892_1113693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1113736_1114723_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114862_1115876_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115872_1116823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	1152173	1217755	4113555	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152173_1153970_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153969_1154938_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155007_1155853_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155920_1156475_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156521_1157472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157570_1158203_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158366_1160649_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160803_1163500_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163625_1164114_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166523_1169394_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169439_1170654_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170883_1172311_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1172351_1173500_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173512_1174271_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174358_1175261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175257_1176208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176337_1177321_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177375_1178098_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179576_1180932_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181012_1183388_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183552_1185628_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185689_1186490_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186591_1187554_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187541_1188297_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188404_1190042_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190109_1190847_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190949_1191525_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191697_1192234_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1192236_1192581_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192596_1193442_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193480_1194860_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194937_1195819_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195917_1196868_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196864_1197275_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197382_1198237_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198229_1199192_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199237_1200362_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1200473_1201346_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201470_1202250_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202403_1203825_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204259_1205957_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1205985_1206108_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1206183_1207125_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207451_1208198_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208205_1209132_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209253_1210171_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210210_1211164_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211188_1211767_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213440_1214049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214126_1214480_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214563_1215553_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215755_1216706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216804_1217755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	1380318	1446817	4113555	transposase	uncultured_Caudovirales_phage(40.0%)	55	NA	NA
WP_010930208.1|1380318_1381269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381334_1381514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1381630_1382353_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382372_1383518_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384425_1385376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1385563_1386766_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1386762_1387521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1387914_1388547_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1389502_1392103_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1392090_1395510_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1395517_1396423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1396561_1397140_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1397136_1398048_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1398061_1398742_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1398943_1400983_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1401001_1401988_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1402013_1402811_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1402807_1404001_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1403997_1404960_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1404977_1406018_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1406005_1406614_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1408202_1409198_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1409217_1410396_+	mandelate racemase	NA	NA	NA	NA	NA
WP_003811401.1|1410406_1411324_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1411379_1412330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1412428_1413199_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1413195_1413876_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1413942_1414731_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1414977_1415994_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1416299_1417454_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817172.1|1422458_1422749_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1422875_1423586_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1423769_1424177_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1424189_1424609_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1424656_1425361_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1425426_1426848_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1426886_1427651_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1427694_1428480_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1428479_1429169_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1429171_1430305_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1430322_1431345_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1431414_1433061_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1433094_1434627_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1434705_1436526_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1436646_1438266_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1438444_1439887_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1440103_1441120_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1441166_1441955_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1441977_1442247_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1442263_1443055_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1443066_1443408_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1443418_1443919_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1443911_1444922_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1444924_1445497_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_041337087.1|1445866_1446817_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	1474988	1513578	4113555	transposase,protease	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1474988_1476323_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476375_1478712_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478837_1479401_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479409_1480501_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480572_1481028_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481028_1481823_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481819_1483001_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1482987_1483593_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483589_1484363_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484374_1485202_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485363_1487727_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487794_1488514_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488637_1489063_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489097_1490048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490165_1491092_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491157_1492315_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492295_1492763_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492910_1493861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493877_1494312_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494301_1494652_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494848_1496003_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1495999_1497172_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497219_1498113_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498158_1498596_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498655_1499345_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1499354_1500305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500403_1501354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1501452_1502436_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1502698_1503796_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1503806_1507049_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1508070_1508715_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1508725_1509625_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1509672_1510758_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1510754_1512449_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1512482_1512641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1512627_1513578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	1597806	1664135	4113555	transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_005012067.1|1597806_1598757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1598763_1599876_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1600562_1601765_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1601968_1604629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1604641_1608046_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_023995689.1|1608713_1610939_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1610985_1611312_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1611362_1611971_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1612070_1613021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1613090_1613855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1613851_1614451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1614554_1615400_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1615465_1616092_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1616088_1617039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1617025_1617214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1617137_1618259_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1618239_1619241_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1619346_1620858_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1620854_1622159_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1622270_1622831_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1623098_1623653_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1624108_1624324_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1624578_1627176_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1627172_1628360_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1629018_1629633_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1629721_1630849_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1630860_1631766_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1632516_1632672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1632658_1633609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1633790_1634543_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1634611_1635271_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1635267_1635996_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1636008_1638288_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1638312_1638516_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1638557_1639205_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930444.1|1640238_1640952_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1641189_1641960_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1641964_1642564_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1642808_1644299_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1644357_1644642_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1644638_1644767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1644779_1644935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1645207_1646134_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1646270_1647011_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1647177_1648554_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1648735_1649641_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1651292_1653095_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1653212_1653863_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1653961_1654912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1654933_1656154_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1656339_1657752_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1657815_1658883_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1658879_1660370_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1660379_1661324_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1661483_1662182_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1662259_1663165_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1663184_1664135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	1700082	1755672	4113555	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1700082_1701033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1701091_1701865_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1701857_1703414_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1703410_1704361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302778.1|1704347_1704503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1705687_1706290_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1706529_1707231_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1707224_1708007_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1708191_1709142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1709128_1709290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1709240_1709978_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1710167_1710926_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1710972_1711962_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1712139_1713108_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1714647_1715616_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1715624_1716566_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1717039_1718050_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1718040_1719555_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1719551_1720898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1720900_1721935_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1721984_1723610_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1724162_1725113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1725217_1726165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1726218_1728033_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1728025_1728700_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1728829_1731904_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1731917_1732217_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1732531_1733155_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1733397_1734267_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1734244_1735189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1735274_1736246_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1736313_1737087_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1737083_1738280_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1738310_1739261_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1739482_1740172_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1740236_1740992_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1741043_1742036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1742045_1742999_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1743114_1744077_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1745478_1745907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1745903_1746854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1747147_1747870_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1748308_1749496_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1749499_1749880_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1751599_1752571_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1752584_1753298_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1753302_1754220_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1754326_1754623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1754721_1755672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	2037170	2090406	4113555	transposase	Erysipelothrix_phage(33.33%)	47	NA	NA
WP_010930730.1|2037170_2038121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2038991_2039864_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2039941_2041081_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|2041430_2042696_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2042701_2043229_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2043233_2044052_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2044051_2044774_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2044795_2045110_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|2045106_2046276_+	CoA transferase	NA	NA	NA	NA	NA
WP_003816680.1|2047177_2048497_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2048569_2049766_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2049776_2051264_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2053858_2054758_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2054895_2055861_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_077068978.1|2056952_2057144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2057130_2058081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_065493883.1|2058077_2058410_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2058538_2058943_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2058935_2060162_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2060158_2060605_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2060674_2061457_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2061498_2063004_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_047122807.1|2063289_2064084_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2065560_2066382_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2066400_2067255_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2067258_2068230_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248938.1|2068304_2068910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247855.1|2068914_2069091_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2069576_2070527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2071663_2071960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2072134_2073487_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2073629_2074646_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2076625_2077639_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2077725_2078631_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2078787_2079132_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2079289_2079748_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2079761_2081978_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2081974_2083036_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2083064_2084039_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2083990_2084809_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2084821_2085430_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2085604_2086000_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2086018_2087458_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2087486_2087834_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2087852_2088803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2088789_2088951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2089455_2090406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	2111099	2161351	4113555	transposase,protease,tRNA	Klosneuvirus(22.22%)	49	NA	NA
WP_005012067.1|2111099_2112050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2113022_2113382_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2113369_2114806_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2114802_2115456_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|2115452_2116652_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2116749_2118024_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2118020_2118971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302783.1|2118957_2119101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2119137_2120112_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2120108_2120252_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2121873_2122536_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2122538_2122715_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2122711_2123650_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2123741_2125232_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2125317_2125470_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2125483_2125723_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2125818_2126562_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2126570_2127095_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2127193_2128117_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2128113_2128875_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2128890_2129976_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_076879573.1|2129988_2130189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2130175_2131126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2131085_2131499_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2131783_2132083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|2132492_2134661_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_124740709.1|2135240_2135435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2135460_2137491_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2137510_2137723_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2138000_2138540_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|2138653_2139961_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2140025_2141183_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2141366_2142266_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2142284_2143589_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2143554_2144661_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2144748_2144985_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2145123_2146194_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2146197_2147553_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2147579_2148740_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2148742_2149381_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|2149382_2150687_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2150727_2152023_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2152029_2152536_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2152532_2153681_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2153708_2154134_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2154456_2157339_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2157431_2158187_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2158952_2160302_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2160400_2161351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	2213827	2278647	4113555	transposase,protease,tRNA	Lake_Baikal_phage(18.18%)	55	NA	NA
WP_005012067.1|2213827_2214778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2215348_2215561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2215578_2216310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2216344_2216986_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|2216978_2217695_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2219859_2220636_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2220657_2221815_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2221811_2222243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|2222239_2223043_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2223056_2223512_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2223524_2224496_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2224561_2225785_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2226012_2226963_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2227086_2229540_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2229728_2231033_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2231137_2231791_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2231793_2233104_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2233282_2233861_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2233972_2234173_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2234518_2235085_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2235168_2235372_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2235678_2235999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2236040_2236322_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2236396_2237653_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2238035_2238365_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2239935_2240757_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2240756_2241896_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2241902_2242799_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2242795_2244721_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2245079_2247692_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2247744_2250045_-	AAA family ATPase	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2250041_2251250_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2251511_2251886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2251882_2252833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2252931_2254926_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2254985_2255951_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2255940_2258802_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2258804_2259311_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2259415_2260624_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2260625_2261564_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2261725_2262199_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2262195_2263146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879558.1|2263132_2263312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566334.1|2263256_2263697_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2263825_2265055_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2265093_2265915_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2265968_2267120_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2267211_2267700_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_010930534.1|2270226_2272800_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2272870_2275444_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2275709_2275910_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2275941_2276103_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2276160_2276499_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2276647_2277598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2277696_2278647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	2349322	2412896	4113555	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2349322_2350273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247142.1|2351673_2353311_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2353340_2354654_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2354787_2355105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2355205_2356528_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2356524_2357475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2357573_2358524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2359053_2360076_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2360104_2360935_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2360951_2362649_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2362713_2363790_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2363949_2364813_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2364843_2365413_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2365429_2366281_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2367338_2368220_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2368294_2369284_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2369346_2370297_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2370359_2371217_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2371276_2371765_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853651.1|2373312_2374527_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2374523_2376110_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2376128_2377196_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2377300_2378845_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2379264_2380839_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2380946_2381963_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2381959_2382799_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2382803_2384441_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2384437_2385388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996112.1|2385374_2385518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2385530_2386805_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_077274083.1|2386801_2387125_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2387197_2388211_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2388230_2389493_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2389495_2390419_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2390415_2391909_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2391919_2392852_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2393033_2394359_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2394393_2395749_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_010930860.1|2395809_2397408_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
WP_010930861.1|2397484_2398216_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003813189.1|2398250_2399624_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2399639_2400551_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2400541_2401135_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2401196_2401583_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2401594_2402065_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2402076_2402700_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2402720_2405468_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_047122786.1|2411743_2411959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2411945_2412896_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	2695246	2735912	4113555	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
WP_010929591.1|2695246_2696197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2696307_2696490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2696589_2697186_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2697369_2698461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2698960_2699371_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2699429_2699771_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2699776_2702194_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2702206_2703229_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2703303_2703663_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2703678_2703876_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2704211_2705162_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2705148_2705310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2705356_2705806_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2705802_2706753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|2706739_2706886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2706863_2708312_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2708426_2708708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2708660_2708825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2708811_2709762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2710006_2710720_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2710842_2711070_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2711364_2712003_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2712075_2713146_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2713142_2714093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2714509_2715034_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2715037_2715307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2715505_2716567_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2716650_2718285_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2718286_2719090_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2719118_2720078_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2720081_2721596_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2721632_2722637_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2723068_2723539_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2723574_2724186_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2724216_2724840_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931022.1|2726483_2727725_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2727768_2728800_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2728796_2729966_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2729959_2730640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2730801_2731644_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2731806_2732778_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2732949_2733828_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2733850_2734921_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2734961_2735912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	2791373	2864240	4113555	transposase,tRNA	Moraxella_phage(16.67%)	57	NA	NA
WP_003810909.1|2791373_2791790_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2791900_2792533_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2792561_2793005_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2793026_2794118_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2794172_2794973_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2795108_2795729_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2795868_2796342_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2797481_2798432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2798428_2806090_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2806330_2810377_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2810689_2811271_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2811267_2812566_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2812645_2813674_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2813597_2813948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2813934_2814885_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2814881_2815832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2816148_2816754_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2816807_2818121_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2818195_2818666_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2818665_2819454_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2819464_2821117_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2821204_2822155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2823316_2823823_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2823819_2824584_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2824599_2824884_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2824948_2825938_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2826109_2827039_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2827010_2827697_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2827730_2828276_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2828320_2829586_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2829582_2830485_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2831666_2832611_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2832705_2834223_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2834264_2835893_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2836000_2836882_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2839993_2840368_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2840392_2840731_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2840774_2842409_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2842447_2843794_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2843901_2845323_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2845392_2845977_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2846079_2847030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2847164_2848271_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2848281_2849379_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931088.1|2850734_2851256_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2851252_2851744_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2851740_2851992_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2851972_2852458_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_076879578.1|2856050_2856956_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2856965_2857397_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2857643_2858147_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2858158_2859625_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2859699_2860575_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2860571_2861579_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2862046_2862352_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2862442_2863033_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2863223_2864240_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	2867383	2934195	4113555	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_010929956.1|2867383_2868334_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2868432_2869383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2869379_2870174_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2870205_2870910_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2870984_2871785_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2871781_2872189_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2872185_2872827_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2872819_2874841_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2876080_2877412_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2877408_2878359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2880065_2880332_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2881039_2881378_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2885932_2886535_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2886631_2887921_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2887978_2888710_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2888706_2889510_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2889506_2890595_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2890591_2891521_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2891669_2892815_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2892836_2893787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2894117_2897939_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2898095_2898764_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2898768_2900442_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2900460_2901780_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2901784_2904136_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2904155_2906324_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2906320_2911510_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2911599_2911914_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2912141_2912387_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2912481_2913000_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2913099_2914305_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2914420_2915818_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2915934_2916513_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2916585_2917977_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2918144_2919095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2919375_2919996_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2919992_2920406_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2920402_2921446_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2921501_2921690_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2921699_2922464_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2922554_2923211_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2923302_2924061_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2924086_2925688_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2925888_2926893_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2926993_2927257_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2927374_2928151_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2928741_2929692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2932075_2933188_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2933244_2934195_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	2964580	3003769	4113555	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|2964580_2965531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2965517_2965763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2965651_2966548_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2968825_2971051_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2971215_2972304_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2972260_2972914_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2972961_2973759_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2974290_2975241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2975321_2976470_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2976526_2977477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2977463_2977682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2977575_2977881_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2977909_2978344_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2978345_2979590_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2979586_2980297_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2980311_2981223_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2981585_2981990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2981986_2982445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2982451_2983360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2983356_2984223_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2984209_2985037_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2985047_2986175_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2987253_2988492_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2988533_2989796_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2989802_2990555_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2990606_2990792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2991066_2991531_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2991562_2992222_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2992366_2994475_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2994471_2995422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2995525_2996146_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2996249_2996990_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2998124_2999249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2999294_2999663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2999904_3000855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3001890_3002433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|3002625_3002832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3002818_3003769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	3408069	3453140	4113555	transposase,tRNA	Staphylococcus_phage(20.0%)	38	NA	NA
WP_005012067.1|3408069_3409020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3409006_3409183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3409786_3410881_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3410873_3412208_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3412161_3412845_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3412870_3414034_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3414030_3415032_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3415031_3415904_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3415900_3416650_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3416646_3417438_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3417434_3418574_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3418882_3419635_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3419668_3420451_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3420454_3420844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3421983_3422847_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3422882_3423971_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3423967_3424918_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3424904_3425318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3425271_3428250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3429176_3430055_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3432003_3432954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3432950_3433418_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3433460_3434231_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3434251_3435052_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3435062_3436472_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3436566_3437352_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3437591_3438608_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3438715_3439108_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3439245_3439926_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3439930_3440929_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3440997_3441948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3443452_3444154_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010931361.1|3446646_3447987_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3448102_3449866_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3449977_3450856_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3450968_3451784_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3451787_3452039_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3452123_3453140_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	3470884	3523290	4113555	transposase,tRNA	Acinetobacter_phage(37.5%)	46	NA	NA
WP_010931363.1|3470884_3471901_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3471996_3472707_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3472703_3473693_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3473824_3475420_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3475422_3476160_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3476315_3477188_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3477456_3478677_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3478673_3479333_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3479404_3480037_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3480066_3480585_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3480595_3481705_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3481751_3482606_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3482607_3483510_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3484732_3485683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3487439_3488429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3488604_3489393_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3489389_3490421_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3490439_3491003_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3491058_3492579_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3492842_3493547_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3493554_3494292_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3494397_3494772_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3494814_3496104_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3496100_3497270_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3497266_3498106_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3498165_3499101_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3499113_3500064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3500162_3501125_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3501156_3501516_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3501640_3502543_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3502544_3504317_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3504351_3505128_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3506451_3507402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3508253_3508574_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3508646_3509528_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3509644_3509887_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3510024_3510495_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3510507_3511047_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3511081_3512623_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3512721_3513627_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3513669_3515070_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3515079_3515502_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931389.1|3516643_3517720_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3518026_3520129_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3520171_3522241_+	AAA family ATPase	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3522339_3523290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP015762	Bordetella pertussis strain VA-150, complete genome	4113555	3540408	3594209	4113555	transposase,tRNA	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3540408_3541359_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3541699_3542650_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3542748_3543699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3543995_3544493_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3544535_3546311_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3546357_3547185_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3547191_3547926_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3549095_3549890_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3550179_3550770_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3550803_3552132_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3552206_3553352_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3553463_3554462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3554424_3554859_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3556375_3557260_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3557256_3558462_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3558458_3559319_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3559431_3561222_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3561262_3561928_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3561928_3562237_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3562402_3563689_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3565122_3566073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3568024_3569239_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3569344_3570334_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3570330_3570939_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3570951_3571581_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3571577_3572198_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3572229_3573021_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3573863_3574328_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3574346_3575273_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3575326_3576613_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3577543_3578416_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3578412_3579363_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3579461_3580412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3580516_3580747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3580873_3581263_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3581279_3583661_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3583653_3585030_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3585045_3586041_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3586059_3587052_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3587292_3587853_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3587857_3588184_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3588220_3589033_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3589043_3590126_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3590212_3591487_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3592209_3593160_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3593258_3594209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
