assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001685665.2_ASM168566v2	NZ_CP015626	Staphylococcus pseudintermedius strain 063228 chromosome, complete genome	1	108638-108750	1	CRISPRCasFinder	no		WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	Orphan	ACAAGTGAAGCTGTAAGTACAGAAGCAAG	29	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	NA|34aa|up_4|NZ_CP015626.1_95063_95165_-,NA	NA|269aa|up_9|NZ_CP015626.1_90237_91044_+	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|165aa|up_8|NZ_CP015626.1_91337_91832_-	COG1755, COG1755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|635aa|up_7|NZ_CP015626.1_92091_93996_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|86aa|up_6|NZ_CP015626.1_94189_94447_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|89aa|up_5|NZ_CP015626.1_94446_94713_+	TIGR02116, Hypothetical_protein_Rv3358/MT3466/Mb3393	NA|34aa|up_4|NZ_CP015626.1_95063_95165_-	NA	NA|498aa|up_3|NZ_CP015626.1_95178_96672_-	PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed	NA|963aa|up_2|NZ_CP015626.1_97428_100317_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|119aa|up_1|NZ_CP015626.1_100374_100731_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|534aa|up_0|NZ_CP015626.1_101984_103586_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|408aa|down_0|NZ_CP015626.1_109264_110488_+	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|522aa|down_1|NZ_CP015626.1_110498_112064_+	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|515aa|down_2|NZ_CP015626.1_112047_113592_+	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|309aa|down_3|NZ_CP015626.1_113581_114508_+	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|796aa|down_4|NZ_CP015626.1_114504_116892_+	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2	NA|503aa|down_5|NZ_CP015626.1_116907_118416_+	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|444aa|down_6|NZ_CP015626.1_118408_119740_+	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|394aa|down_7|NZ_CP015626.1_119801_120983_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|505aa|down_8|NZ_CP015626.1_124561_126076_-	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|524aa|down_9|NZ_CP015626.1_126094_127666_-	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
GCF_001685665.2_ASM168566v2	NZ_CP015626	Staphylococcus pseudintermedius strain 063228 chromosome, complete genome	2	590452-590572	2	CRISPRCasFinder	no	RT,PrimPol	WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	Unclear	ATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	NA,NA|291aa|down_3|NZ_CP015626.1_593868_594741_+,NA|307aa|down_4|NZ_CP015626.1_594715_595636_+,NA|145aa|down_6|NZ_CP015626.1_597186_597621_+	NA|123aa|up_9|NZ_CP015626.1_580346_580715_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|270aa|up_8|NZ_CP015626.1_581195_582005_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|289aa|up_7|NZ_CP015626.1_582001_582868_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_6|NZ_CP015626.1_582857_583661_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|268aa|up_5|NZ_CP015626.1_583676_584480_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_4|NZ_CP015626.1_584688_585126_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_3|NZ_CP015626.1_585139_585538_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|287aa|up_2|NZ_CP015626.1_586303_587164_+	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|378aa|up_1|NZ_CP015626.1_587160_588294_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|479aa|up_0|NZ_CP015626.1_588951_590388_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|30aa|down_0|NZ_CP015626.1_590975_591065_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	RT|429aa|down_1|NZ_CP015626.1_591548_592835_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|182aa|down_2|NZ_CP015626.1_593141_593687_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|291aa|down_3|NZ_CP015626.1_593868_594741_+	NA	NA|307aa|down_4|NZ_CP015626.1_594715_595636_+	NA	NA|240aa|down_5|NZ_CP015626.1_596001_596721_+	pfam08808, RES, RES domain	NA|145aa|down_6|NZ_CP015626.1_597186_597621_+	NA	NA|179aa|down_7|NZ_CP015626.1_597809_598346_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	PrimPol|945aa|down_8|NZ_CP015626.1_598626_601461_+	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown]	NA|251aa|down_9|NZ_CP015626.1_601617_602370_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
GCF_001685665.2_ASM168566v2	NZ_CP015626	Staphylococcus pseudintermedius strain 063228 chromosome, complete genome	3	2664628-2664874	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT	WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	Type III-A,Type III-B,Type III-D,Type III-C	TAGATCGATAACTACCCCGAATAACAGGGGACGAGAAC,GATCGATAACTACCCCGAATAACAGGGGAC,GATCGATAACTACCCCGAATAACAGGGGACGAGAA	38,30,35	0	0	NA	NA	NA:NA:NA	2,3,3	3	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	NA|663aa|up_9|NZ_CP015626.1_2654853_2656842_+,NA|123aa|up_7|NZ_CP015626.1_2658138_2658507_+,NA|31aa|up_4|NZ_CP015626.1_2662451_2662544_+,NA|74aa|up_1|NZ_CP015626.1_2663389_2663611_+,NA|56aa|down_9|NZ_CP015626.1_2674563_2674731_+	NA|663aa|up_9|NZ_CP015626.1_2654853_2656842_+	NA	NA|370aa|up_8|NZ_CP015626.1_2657036_2658146_+	PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional	NA|123aa|up_7|NZ_CP015626.1_2658138_2658507_+	NA	NA|529aa|up_6|NZ_CP015626.1_2658535_2660122_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|113aa|up_5|NZ_CP015626.1_2662113_2662452_+	pfam06106, SAUGI, S	NA|31aa|up_4|NZ_CP015626.1_2662451_2662544_+	NA	NA|104aa|up_3|NZ_CP015626.1_2662545_2662857_+	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960)	NA|168aa|up_2|NZ_CP015626.1_2662871_2663375_+	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|74aa|up_1|NZ_CP015626.1_2663389_2663611_+	NA	NA|104aa|up_0|NZ_CP015626.1_2663902_2664214_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	cas1|302aa|down_0|NZ_CP015626.1_2664948_2665854_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|down_1|NZ_CP015626.1_2665853_2666159_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|down_2|NZ_CP015626.1_2666172_2668446_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|down_3|NZ_CP015626.1_2668448_2668874_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|down_4|NZ_CP015626.1_2668875_2669520_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|down_5|NZ_CP015626.1_2669530_2670439_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|down_6|NZ_CP015626.1_2670441_2671464_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|423aa|down_7|NZ_CP015626.1_2671463_2672732_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|245aa|down_8|NZ_CP015626.1_2672728_2673463_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|56aa|down_9|NZ_CP015626.1_2674563_2674731_+	NA
GCF_001685665.2_ASM168566v2	NZ_CP015626	Staphylococcus pseudintermedius strain 063228 chromosome, complete genome	4	2673598-2673845	4,2	CRISPRCasFinder,CRT	no	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT	WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	Type III-A,Type III-B,Type III-D,Type III-C	ATTCGATAACTACCCCGTAGAAGAGGGGACGAG,ATTCGATAACTACCNCCGTAGAAGAGGGGACGAG	33,34	0	0	NA	NA	NA:NA	3,3	3	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	NA,NA|56aa|down_0|NZ_CP015626.1_2674563_2674731_+,NA|62aa|down_4|NZ_CP015626.1_2683624_2683810_+	NA|104aa|up_9|NZ_CP015626.1_2663902_2664214_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	cas1|302aa|up_8|NZ_CP015626.1_2664948_2665854_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_7|NZ_CP015626.1_2665853_2666159_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|up_6|NZ_CP015626.1_2666172_2668446_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_5|NZ_CP015626.1_2668448_2668874_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|up_4|NZ_CP015626.1_2668875_2669520_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_3|NZ_CP015626.1_2669530_2670439_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|up_2|NZ_CP015626.1_2670441_2671464_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|423aa|up_1|NZ_CP015626.1_2671463_2672732_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|245aa|up_0|NZ_CP015626.1_2672728_2673463_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|56aa|down_0|NZ_CP015626.1_2674563_2674731_+	NA	NA|304aa|down_1|NZ_CP015626.1_2675139_2676051_+	pfam14355, Abi_C, Abortive infection C-terminus	RT|439aa|down_2|NZ_CP015626.1_2680341_2681658_-	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|392aa|down_3|NZ_CP015626.1_2682284_2683460_+	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|62aa|down_4|NZ_CP015626.1_2683624_2683810_+	NA	NA|372aa|down_5|NZ_CP015626.1_2684276_2685392_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|347aa|down_6|NZ_CP015626.1_2685428_2686469_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|441aa|down_7|NZ_CP015626.1_2686501_2687824_+	TIGR00911, High-affinity_methionine_permease, L-type amino acid transporter	NA|683aa|down_8|NZ_CP015626.1_2688046_2690095_+	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|191aa|down_9|NZ_CP015626.1_2690277_2690850_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
