The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016371	Bacillus velezensis strain S3-1, complete genome	3929772	647508	657399	3929772		Synechococcus_phage(50.0%)	9	NA	NA
WP_032872546.1|647508_648801_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	27.3	7.7e-19
WP_032872544.1|648876_649596_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	44.7	2.6e-48
WP_003155758.1|649595_649850_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	M4QPE7	Synechococcus_phage	33.3	4.7e-05
WP_015388591.1|649846_650530_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_032872542.1|650513_652742_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.5	1.6e-157
WP_032872540.1|652717_654148_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
WP_003155753.1|654239_655280_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.1	2.4e-63
WP_003155752.1|655276_655864_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.3	1.0e-26
WP_032872538.1|655860_657399_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	50.8	1.1e-77
>prophage 2
NZ_CP016371	Bacillus velezensis strain S3-1, complete genome	3929772	1209174	1241029	3929772	holin,plate,tail,terminase,portal	Bacillus_phage(32.26%)	42	NA	NA
WP_087920760.1|1209174_1210311_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	47.9	1.3e-94
WP_003154881.1|1210300_1210435_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA	NA
WP_032874566.1|1210577_1211531_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	69.3	1.1e-62
WP_007610770.1|1211568_1211946_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	41.4	1.5e-15
WP_032874569.1|1212055_1212661_+	poly-gamma-glutamate hydrolase family protein	NA	A0A0Y0AJU6	Bacillus_phage	47.8	5.1e-42
WP_007610775.1|1212800_1213391_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	51.7	3.0e-39
WP_003154871.1|1213539_1213878_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	45.8	8.4e-18
WP_029325864.1|1214068_1214248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032874571.1|1214237_1215065_+|portal	phage portal protein	portal	S6BFM4	Thermus_phage	49.0	1.7e-19
WP_032874573.1|1214964_1215765_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	49.8	4.7e-59
WP_032874575.1|1216029_1216371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003154859.1|1216360_1216564_+	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	48.5	5.4e-12
WP_032874577.1|1216670_1217183_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0K2CNQ1	Brevibacillus_phage	44.6	2.2e-22
WP_032874579.1|1217295_1218093_+|terminase	terminase	terminase	A0A0S2MVB6	Bacillus_phage	49.8	6.1e-59
WP_032874581.1|1218089_1219388_+|terminase	PBSX family phage terminase large subunit	terminase	M4ZRM5	Bacillus_phage	58.9	2.7e-149
WP_087920794.1|1219436_1220828_+|portal	phage portal protein	portal	A0A1B1P7C8	Bacillus_phage	55.8	1.8e-138
WP_007407275.1|1220847_1221693_+|portal	phage portal protein	portal	A0A1B1P7E4	Bacillus_phage	58.1	2.5e-55
WP_007407274.1|1221719_1222655_+|portal	phage portal protein	portal	A0A1B1P7E3	Bacillus_phage	62.8	3.3e-104
WP_032874585.1|1222671_1223055_+	DUF3199 family protein	NA	NA	NA	NA	NA
WP_007610806.1|1223051_1223408_+	DUF3599 family protein	NA	NA	NA	NA	NA
WP_032874587.1|1223404_1223908_+	HK97 gp10 family phage protein	NA	A0A249XXA4	Clostridium_phage	41.7	5.4e-37
WP_032874589.1|1223904_1224351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007407269.1|1224347_1224557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007610810.1|1224556_1225954_+|portal	phage portal protein	portal	A0A0A7RTT5	Clostridium_phage	40.4	9.0e-82
WP_003154837.1|1225955_1226399_+|tail	phage tail tube protein	tail	A0A0K2CNG3	Brevibacillus_phage	45.2	8.4e-26
WP_032874591.1|1226474_1226921_+|portal	phage portal protein	portal	A0A0A7RTY8	Clostridium_phage	35.8	1.0e-10
WP_015239684.1|1226962_1227115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032874593.1|1227102_1232208_+	transglycosylase SLT domain-containing protein	NA	A0A1L2JY60	Aeribacillus_phage	46.6	2.0e-41
WP_007610816.1|1232200_1232860_+	LysM peptidoglycan-binding domain-containing protein	NA	G3MBQ1	Bacillus_virus	45.3	1.8e-08
WP_032874595.1|1232873_1233851_+	hypothetical protein	NA	A0A1L6BY20	Clostridium_phage	30.6	4.9e-34
WP_007610818.1|1233850_1234117_+	DUF2577 domain-containing protein	NA	S6C459	Thermus_phage	38.6	1.2e-06
WP_032874597.1|1234220_1234646_+	DUF2634 domain-containing protein	NA	A0A0A7RTU4	Clostridium_phage	34.7	5.6e-11
WP_007610819.1|1234638_1235685_+|plate	baseplate J/gp47 family protein	plate	S6AVU3	Thermus_phage	43.8	2.3e-69
WP_032874599.1|1235668_1236247_+	YmfQ family protein	NA	A0A0A7RTT8	Clostridium_phage	30.6	5.3e-12
WP_015239690.1|1236243_1236516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032874601.1|1236518_1238141_+	hypothetical protein	NA	A0A1P8CWR7	Bacillus_phage	40.2	1.3e-42
WP_032874603.1|1238153_1238525_+	YomQ/XkdW protein, phage-like element PBSX	NA	NA	NA	NA	NA
WP_032874605.1|1238529_1238727_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	60.0	2.8e-13
WP_032874607.1|1238783_1239545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003154815.1|1239596_1239860_+	protein xhlA	NA	A0A2H4JD40	uncultured_Caudovirales_phage	63.1	8.8e-23
WP_003154813.1|1239873_1240137_+|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	65.5	2.3e-23
WP_032874609.1|1240150_1241029_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	60.2	3.1e-80
>prophage 3
NZ_CP016371	Bacillus velezensis strain S3-1, complete genome	3929772	1791703	1797917	3929772		Bacillus_phage(50.0%)	7	NA	NA
WP_003154061.1|1791703_1792096_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	59.1	3.8e-30
WP_007611605.1|1792055_1794158_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	85.7	0.0e+00
WP_012117608.1|1794175_1795165_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.0	1.1e-155
WP_032874993.1|1795213_1795834_+	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	48.4	5.4e-47
WP_032874995.1|1795883_1796642_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	50.4	3.6e-53
WP_032874997.1|1796675_1796900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015417523.1|1796948_1797917_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.9	8.0e-53
>prophage 4
NZ_CP016371	Bacillus velezensis strain S3-1, complete genome	3929772	2239793	2246046	3929772		Staphylococcus_phage(66.67%)	9	NA	NA
WP_007409428.1|2239793_2240387_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.6	2.6e-14
WP_007409427.1|2240376_2241132_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.7	2.9e-10
WP_003153376.1|2241339_2241429_+	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_032873229.1|2241516_2242038_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_003153373.1|2242103_2242478_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA	NA
WP_003153372.1|2242594_2243059_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	59.3	1.2e-43
WP_003153371.1|2243091_2244288_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	54.9	2.1e-116
WP_032873228.1|2244302_2244950_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	44.3	1.1e-39
WP_032873227.1|2244930_2246046_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	36.6	4.4e-55
>prophage 5
NZ_CP016371	Bacillus velezensis strain S3-1, complete genome	3929772	3588385	3637631	3929772	protease,coat	Staphylococcus_phage(16.67%)	51	NA	NA
WP_003151043.1|3588385_3589045_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003151042.1|3589150_3589339_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_007407650.1|3589376_3589796_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_032864567.1|3590181_3591561_+	amino acid permease	NA	NA	NA	NA	NA
WP_007407653.1|3591625_3592126_-	YwgA family protein	NA	NA	NA	NA	NA
WP_032875878.1|3592165_3593467_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.5	8.0e-24
WP_003151034.1|3593627_3593852_-	DUF1450 domain-containing protein	NA	NA	NA	NA	NA
WP_012118695.1|3594054_3594828_+	RsfA family transcriptional regulator	NA	NA	NA	NA	NA
WP_007407657.1|3595127_3595403_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_032875875.1|3595403_3595958_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_032875871.1|3596055_3596976_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.0	1.3e-36
WP_007407660.1|3596972_3597926_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_032875868.1|3597915_3598752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032875865.1|3598742_3599540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032875862.1|3599508_3600432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003151018.1|3600480_3600660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032875859.1|3600812_3601676_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_007614474.1|3601722_3602622_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	40.2	2.1e-07
WP_045555059.1|3602737_3603715_+	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
WP_003151012.1|3603753_3604725_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_003151011.1|3604982_3605747_+	heme-dependent peroxidase	NA	NA	NA	NA	NA
WP_007407669.1|3605870_3606650_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_032875852.1|3606666_3607866_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_007407671.1|3607879_3609061_-	MFS transporter	NA	NA	NA	NA	NA
WP_032875848.1|3609057_3610476_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_032875845.1|3610493_3611255_-	dihydroanticapsin 7-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.0	1.8e-20
WP_003151000.1|3611251_3611962_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_032875842.1|3611951_3612566_-	bacilysin biosynthesis protein BacA	NA	NA	NA	NA	NA
WP_032875839.1|3612727_3613966_-	MFS transporter	NA	NA	NA	NA	NA
WP_032875836.1|3614188_3615391_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.1	7.1e-27
WP_032875833.1|3615423_3616842_-	amino acid permease	NA	NA	NA	NA	NA
WP_032875829.1|3616866_3618549_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_032875826.1|3618620_3620168_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003150991.1|3620375_3621662_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_032875822.1|3621896_3622832_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.9	4.4e-24
WP_032875820.1|3622832_3623531_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.8	4.1e-35
WP_032875817.1|3623722_3624589_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_012118718.1|3624609_3625314_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_032876931.1|3625378_3626305_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	45.9	1.1e-43
WP_003150986.1|3626653_3627109_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_032875814.1|3627105_3627954_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.3	7.0e-37
WP_032875811.1|3627974_3628922_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.2	4.5e-69
WP_032875808.1|3628924_3629662_-	NTP transferase domain-containing protein	NA	G3MA50	Bacillus_virus	42.7	5.0e-47
WP_032875805.1|3629689_3630694_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_087920782.1|3630695_3631439_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_032875799.1|3631428_3632550_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_032875796.1|3632549_3633413_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_032875793.1|3633413_3634583_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_032875790.1|3634605_3636030_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_032875786.1|3636034_3636805_-	glycosyltransferase family 2 protein	NA	A0A0F7L2F7	uncultured_marine_virus	26.3	4.4e-06
WP_007614539.1|3637085_3637631_+|coat	spore coat protein GerQ	coat	NA	NA	NA	NA
