The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016392	Aeromonas hydrophila strain GYK1, complete genome	4951765	1015423	1023327	4951765	protease	Staphylococcus_phage(50.0%)	9	NA	NA
WP_011707102.1|1015423_1016677_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.5	2.3e-100
WP_016351738.1|1016760_1017240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016351737.1|1017314_1017647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010675395.1|1017769_1018219_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_016351736.1|1018315_1019425_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	35.2	2.7e-49
WP_016351735.1|1019479_1020133_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	36.6	7.1e-21
WP_016351734.1|1020274_1021384_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.0	7.9e-65
WP_043158851.1|1021447_1022659_-|protease	serine protease	protease	V5LS29	Emiliania_huxleyi_virus	26.9	8.8e-09
WP_080644425.1|1022742_1023327_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	4.4e-30
>prophage 2
NZ_CP016392	Aeromonas hydrophila strain GYK1, complete genome	4951765	2551668	2568147	4951765	tRNA	Hokovirus(12.5%)	11	NA	NA
WP_075384277.1|2551668_2555592_-	transporter substrate-binding domain-containing protein	NA	A0A1V0SGX0	Hokovirus	36.8	2.6e-33
WP_005300715.1|2555682_2555979_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	35.6	3.0e-11
WP_016350664.1|2555982_2558370_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	24.5	1.8e-05
WP_016350663.1|2558382_2559366_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	44.0	1.5e-35
WP_005300683.1|2559681_2560038_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_005300673.1|2560053_2560251_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_075384255.1|2560337_2560886_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.9	4.9e-15
WP_016350661.1|2560889_2562818_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.9	2.8e-126
WP_016350660.1|2563054_2563642_-	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_016350659.1|2563816_2564872_+	PA0069 family radical SAM protein	NA	A0A1C9EG97	Acidianus_two-tailed_virus	28.6	2.4e-10
WP_011706172.1|2565399_2568147_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	34.9	1.3e-108
>prophage 3
NZ_CP016392	Aeromonas hydrophila strain GYK1, complete genome	4951765	3311142	3322215	4951765	head	Shigella_phage(50.0%)	16	NA	NA
WP_016350132.1|3311142_3311556_-	DUF1320 domain-containing protein	NA	B7SDP4	Haemophilus_phage	36.4	1.3e-15
WP_016350131.1|3311557_3312007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016350130.1|3312110_3313019_-|head	phage head protein	head	A0A0C4UQR9	Shigella_phage	57.2	7.4e-101
WP_016350129.1|3313063_3314212_-	hypothetical protein	NA	A0A0C4UQU6	Shigella_phage	43.5	2.1e-68
WP_016350128.1|3314434_3314881_-	phage virion morphogenesis protein	NA	Q5ZQY1	Pseudomonas_phage	32.9	4.8e-13
WP_016350127.1|3314880_3315081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016350126.1|3315100_3316570_-	hypothetical protein	NA	A0A2H4IYU7	uncultured_Caudovirales_phage	52.7	1.5e-63
WP_016350125.1|3316569_3318159_-	DUF935 domain-containing protein	NA	J9SVY0	Pseudomonas_phage	48.4	2.1e-119
WP_016350124.1|3318158_3319712_-	hypothetical protein	NA	A0A0C4UR29	Shigella_phage	58.4	5.7e-162
WP_016350123.1|3319711_3320287_-	DUF3486 family protein	NA	A0A0C4UQU5	Shigella_phage	68.9	3.6e-61
WP_005345917.1|3320289_3320586_-	hypothetical protein	NA	A0A0C4UR00	Shigella_phage	57.0	6.2e-17
WP_016350122.1|3320582_3320897_-	DUF2730 family protein	NA	NA	NA	NA	NA
WP_016350121.1|3320877_3321105_-	DnaK suppressor protein	NA	NA	NA	NA	NA
WP_005353373.1|3321126_3321348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016350120.1|3321340_3321643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043118779.1|3321639_3322215_-	secretion activator protein	NA	B0ZSJ3	Halomonas_phage	30.4	3.7e-13
>prophage 4
NZ_CP016392	Aeromonas hydrophila strain GYK1, complete genome	4951765	3468119	3514146	4951765	transposase,holin,integrase	Vibrio_phage(16.67%)	40	3477836:3477851	3524099:3524114
WP_100654772.1|3468119_3469323_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	70.5	1.2e-114
WP_081298729.1|3469550_3470129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065371257.1|3470190_3470616_+	DUF2787 domain-containing protein	NA	NA	NA	NA	NA
WP_065371258.1|3470625_3471015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155770771.1|3471233_3472145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065371261.1|3472144_3473896_-	AAA family ATPase	NA	Q2P9X8	Enterobacteria_phage	34.7	5.9e-14
WP_155770772.1|3474010_3475453_-	NTPase KAP	NA	R9TRQ8	Vibrio_phage	29.6	1.1e-29
WP_081298731.1|3475503_3476658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065371264.1|3476654_3478208_-	SAM-dependent DNA methyltransferase	NA	J7I0U9	Acinetobacter_phage	31.2	7.3e-32
3477836:3477851	attL	CTTTCACCAACAGGGT	NA	NA	NA	NA
WP_065371265.1|3478259_3481691_-	DUF4145 domain-containing protein	NA	Q6NDX2	Leptospira_phage	25.2	3.9e-17
WP_064341176.1|3481987_3482179_-	DUF3283 family protein	NA	NA	NA	NA	NA
WP_065371266.1|3482295_3482739_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	49.6	4.3e-30
WP_065371267.1|3482719_3483979_+	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	52.5	9.2e-118
WP_065371268.1|3484105_3486247_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_065371269.1|3486348_3487977_-	DUF4297 domain-containing protein	NA	NA	NA	NA	NA
WP_065371270.1|3488525_3489194_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
WP_081298732.1|3489622_3489799_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	44.8	8.2e-09
WP_155770773.1|3490403_3491240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065371244.1|3491366_3492284_-|transposase	IS5 family transposase	transposase	Q9MCT5	Escherichia_phage	56.1	2.4e-91
WP_081298733.1|3492715_3494032_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_016350034.1|3494352_3496641_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA	NA
WP_075384360.1|3496627_3497467_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_075384361.1|3497582_3498494_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_073349442.1|3498876_3499482_+	TetR/AcrR family transcriptional regulator	NA	A0A0R6PIB6	Moraxella_phage	31.0	3.4e-09
WP_016350030.1|3499503_3500313_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_075384362.1|3500276_3500828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010634659.1|3501550_3501829_+	BMC domain-containing protein	NA	NA	NA	NA	NA
WP_011705244.1|3501845_3502130_+	BMC domain-containing protein	NA	NA	NA	NA	NA
WP_002442217.1|3502144_3502423_+	BMC domain-containing protein	NA	NA	NA	NA	NA
WP_016350028.1|3502476_3504063_+	acetaldehyde dehydrogenase (acetylating)	NA	NA	NA	NA	NA
WP_010634663.1|3504089_3504347_+	EutN/CcmL family microcompartment protein	NA	NA	NA	NA	NA
WP_016350027.1|3504362_3505517_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_043159118.1|3505542_3508929_+|holin	choline trimethylamine-lyase	holin	A0A1S6UAD4	Serratia_phage	45.0	9.7e-05
WP_075384363.1|3509003_3509990_+|holin	choline TMA-lyase-activating enzyme	holin	NA	NA	NA	NA
WP_043118730.1|3510002_3510455_+	BMC domain-containing protein	NA	NA	NA	NA	NA
WP_016350023.1|3510451_3511072_+	phosphate propanoyltransferase	NA	NA	NA	NA	NA
WP_016350022.1|3511083_3511776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016350021.1|3511795_3512209_+	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_011705235.1|3512226_3512556_+	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_016350020.1|3512928_3514146_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	45.9	7.8e-98
3524099:3524114	attR	CTTTCACCAACAGGGT	NA	NA	NA	NA
>prophage 5
NZ_CP016392	Aeromonas hydrophila strain GYK1, complete genome	4951765	4079648	4089578	4951765	tRNA	uncultured_Mediterranean_phage(25.0%)	10	NA	NA
WP_081298734.1|4079648_4081508_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.6	1.1e-34
WP_016349544.1|4081721_4083509_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.1	5.2e-74
WP_016349543.1|4083597_4084041_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	48.6	1.7e-26
WP_005309452.1|4084056_4084272_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_016349542.1|4084451_4085465_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.3	6.9e-108
WP_011704778.1|4085549_4086533_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.1	1.7e-34
WP_043118488.1|4086580_4087621_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A0A7NU10	Lactobacillus_phage	35.6	1.1e-12
WP_073352336.1|4087631_4088207_-	DedA family protein	NA	NA	NA	NA	NA
WP_016349539.1|4088209_4088827_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.4	5.3e-34
WP_016349538.1|4088831_4089578_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.7	2.1e-69
