assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001683515.1_ASM168351v1	NZ_CP016391	Streptococcus agalactiae strain FWL1402 chromosome, complete genome	1	525581-526207	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	 Type I-U?,Type I-C,Type I-U	GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT,GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT,GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	8,8,9	9	TypeI-U?,TypeI-C,TypeI-U	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	NA|231aa|up_9|NZ_CP016391.1_512028_512721_+,NA|260aa|up_7|NZ_CP016391.1_515611_516391_-,NA|97aa|down_6|NZ_CP016391.1_531870_532161_+	NA|231aa|up_9|NZ_CP016391.1_512028_512721_+	NA	NA|884aa|up_8|NZ_CP016391.1_512742_515394_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|260aa|up_7|NZ_CP016391.1_515611_516391_-	NA	cas3|808aa|up_6|NZ_CP016391.1_517402_519826_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_CP016391.1_519958_520687_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_CP016391.1_520686_522582_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|NZ_CP016391.1_522586_523435_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|224aa|up_2|NZ_CP016391.1_523436_524108_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_CP016391.1_524104_525130_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP016391.1_525140_525434_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|320aa|down_0|NZ_CP016391.1_526343_527303_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|301aa|down_1|NZ_CP016391.1_527463_528366_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|355aa|down_2|NZ_CP016391.1_528525_529590_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|331aa|down_3|NZ_CP016391.1_529702_530695_+	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism]	NA|150aa|down_4|NZ_CP016391.1_530739_531189_-	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative	NA|235aa|down_5|NZ_CP016391.1_531154_531859_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|97aa|down_6|NZ_CP016391.1_531870_532161_+	NA	NA|162aa|down_7|NZ_CP016391.1_532157_532643_+	cd02163, PPAT, Phosphopantetheine adenylyltransferase	NA|445aa|down_8|NZ_CP016391.1_533779_535114_+	cd00845, MPP_UshA_N_like, Escherichia coli UshA-like family, N-terminal metallophosphatase domain	NA|193aa|down_9|NZ_CP016391.1_535183_535762_+	COG4470, COG4470, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001683515.1_ASM168351v1	NZ_CP016391	Streptococcus agalactiae strain FWL1402 chromosome, complete genome	2	927723-928682	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	13,14,11	14	TypeII-A,TypeII-B,TypeII-C	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	NA,NA	NA|124aa|up_9|NZ_CP016391.1_917104_917476_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|127aa|up_8|NZ_CP016391.1_917500_917881_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|377aa|up_7|NZ_CP016391.1_917972_919103_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|246aa|up_6|NZ_CP016391.1_919106_919844_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|257aa|up_5|NZ_CP016391.1_919844_920615_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|219aa|up_4|NZ_CP016391.1_920604_921261_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1371aa|up_3|NZ_CP016391.1_921648_925761_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|290aa|up_2|NZ_CP016391.1_925762_926632_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|114aa|up_1|NZ_CP016391.1_926628_926970_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP016391.1_926956_927622_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|139aa|down_0|NZ_CP016391.1_929239_929656_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_1|NZ_CP016391.1_929791_931624_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|878aa|down_2|NZ_CP016391.1_931870_934504_+	NF033189, internalin_A, class 1 internalin InlA	NA|220aa|down_3|NZ_CP016391.1_934603_935263_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_4|NZ_CP016391.1_935271_935736_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_5|NZ_CP016391.1_935735_936125_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|931aa|down_6|NZ_CP016391.1_936276_939069_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|368aa|down_7|NZ_CP016391.1_939068_940172_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|213aa|down_8|NZ_CP016391.1_940292_940931_-	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|204aa|down_9|NZ_CP016391.1_941641_942253_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]
GCF_001683515.1_ASM168351v1	NZ_CP016391	Streptococcus agalactiae strain FWL1402 chromosome, complete genome	3	1425783-1427336	3	CRT	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	Orphan	TGANGCGCTNGTNCTNGC	18	4	8	1426149-1426202|1426221-1426238|1426221-1426238|1426221-1426238|1426221-1426238|1426221-1426238|1426305-1426322|1426425-1426442	NZ_CP016391.1_1427493-1427546|NZ_CP016391.1_1427529-1427546|NZ_CP016391.1_1427457-1427474|NZ_CP016391.1_1427493-1427510|NZ_CP016391.1_1427601-1427618|NZ_CP016391.1_1427637-1427654|NZ_CP016391.1_1427601-1427618|NZ_CP016391.1_1427361-1427378	NA	23	23	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	NA,NA|117aa|down_4|NZ_CP016391.1_1437867_1438218_+,NA|53aa|down_5|NZ_CP016391.1_1438309_1438468_-	NA|331aa|up_9|NZ_CP016391.1_1413083_1414076_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|520aa|up_8|NZ_CP016391.1_1414072_1415632_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|515aa|up_7|NZ_CP016391.1_1415638_1417183_-	pfam16993, Asp1, Accessory Sec system protein Asp1	NA|410aa|up_6|NZ_CP016391.1_1417182_1418412_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|399aa|up_5|NZ_CP016391.1_1418534_1419731_-	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|292aa|up_4|NZ_CP016391.1_1419791_1420667_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|395aa|up_3|NZ_CP016391.1_1420659_1421844_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|414aa|up_2|NZ_CP016391.1_1421833_1423075_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|402aa|up_1|NZ_CP016391.1_1423071_1424277_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|336aa|up_0|NZ_CP016391.1_1424285_1425293_-	PRK09814, PRK09814, sugar transferase	NA|664aa|down_0|NZ_CP016391.1_1431640_1433632_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|307aa|down_1|NZ_CP016391.1_1433692_1434613_-	pfam02517, Abi, CAAX protease self-immunity	NA|728aa|down_2|NZ_CP016391.1_1434795_1436979_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|down_3|NZ_CP016391.1_1436978_1437719_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|117aa|down_4|NZ_CP016391.1_1437867_1438218_+	NA	NA|53aa|down_5|NZ_CP016391.1_1438309_1438468_-	NA	NA|438aa|down_6|NZ_CP016391.1_1438493_1439807_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|down_7|NZ_CP016391.1_1439867_1439996_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|414aa|down_8|NZ_CP016391.1_1440173_1441415_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|193aa|down_9|NZ_CP016391.1_1441448_1442027_-	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)
GCF_001683515.1_ASM168351v1	NZ_CP016391	Streptococcus agalactiae strain FWL1402 chromosome, complete genome	4	1947849-1948322	4	CRT	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	Orphan	TCTGGTTTGGCNTCTGGN	18	1	1	1948203-1948220	NZ_CP016391.1_1947843-1947860	NA	8	8	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	NA|203aa|up_4|NZ_CP016391.1_1940197_1940806_+,NA	NA|615aa|up_9|NZ_CP016391.1_1927261_1929106_-	PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed	NA|746aa|up_8|NZ_CP016391.1_1929150_1931388_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|108aa|up_7|NZ_CP016391.1_1931757_1932081_-	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|231aa|up_6|NZ_CP016391.1_1932070_1932763_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|463aa|up_5|NZ_CP016391.1_1938716_1940105_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_4|NZ_CP016391.1_1940197_1940806_+	NA	NA|834aa|up_3|NZ_CP016391.1_1940895_1943397_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|416aa|up_2|NZ_CP016391.1_1943773_1945021_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|269aa|up_1|NZ_CP016391.1_1945678_1946484_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|180aa|up_0|NZ_CP016391.1_1946907_1947447_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|58aa|down_0|NZ_CP016391.1_1950426_1950600_-	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]	NA|51aa|down_1|NZ_CP016391.1_1950635_1950788_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|774aa|down_2|NZ_CP016391.1_1950836_1953158_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|295aa|down_3|NZ_CP016391.1_1953201_1954086_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|547aa|down_4|NZ_CP016391.1_1954110_1955751_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|404aa|down_5|NZ_CP016391.1_1955920_1957132_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|224aa|down_6|NZ_CP016391.1_1957198_1957870_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|401aa|down_7|NZ_CP016391.1_1957899_1959102_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_8|NZ_CP016391.1_1959122_1959902_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|246aa|down_9|NZ_CP016391.1_1960060_1960798_+	COG2188, PhnF, Transcriptional regulators [Transcription]
GCF_001683515.1_ASM168351v1	NZ_CP016391	Streptococcus agalactiae strain FWL1402 chromosome, complete genome	5	1997876-1997962	3	CRISPRCasFinder	no	csa3	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	Type I-A	AGCAGTATCGTACTTAGTTTGAGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL,csa3	NA|154aa|up_0|NZ_CP016391.1_1996530_1996992_-,NA|319aa|down_1|NZ_CP016391.1_2000381_2001338_-,NA|98aa|down_2|NZ_CP016391.1_2001572_2001866_+,NA|147aa|down_3|NZ_CP016391.1_2001947_2002388_+,NA|177aa|down_4|NZ_CP016391.1_2002384_2002915_+,NA|424aa|down_6|NZ_CP016391.1_2003824_2005096_+,NA|88aa|down_7|NZ_CP016391.1_2005178_2005442_+	NA|146aa|up_9|NZ_CP016391.1_1987871_1988309_-	TIGR01529, Arginine_repressor	NA|564aa|up_8|NZ_CP016391.1_1988530_1990222_+	PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed	NA|103aa|up_7|NZ_CP016391.1_1990309_1990618_+	pfam08951, EntA_Immun, Enterocin A Immunity	NA|291aa|up_6|NZ_CP016391.1_1990644_1991517_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|315aa|up_5|NZ_CP016391.1_1991624_1992569_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|584aa|up_4|NZ_CP016391.1_1992558_1994310_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|427aa|up_3|NZ_CP016391.1_1994402_1995683_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|61aa|up_2|NZ_CP016391.1_1995902_1996085_+	PRK01110, rpmF, 50S ribosomal protein L32; Validated	NA|50aa|up_1|NZ_CP016391.1_1996100_1996250_+	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|154aa|up_0|NZ_CP016391.1_1996530_1996992_-	NA	NA|112aa|down_0|NZ_CP016391.1_2000009_2000345_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|319aa|down_1|NZ_CP016391.1_2000381_2001338_-	NA	NA|98aa|down_2|NZ_CP016391.1_2001572_2001866_+	NA	NA|147aa|down_3|NZ_CP016391.1_2001947_2002388_+	NA	NA|177aa|down_4|NZ_CP016391.1_2002384_2002915_+	NA	NA|249aa|down_5|NZ_CP016391.1_2002914_2003661_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|424aa|down_6|NZ_CP016391.1_2003824_2005096_+	NA	NA|88aa|down_7|NZ_CP016391.1_2005178_2005442_+	NA	NA|422aa|down_8|NZ_CP016391.1_2005538_2006804_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|209aa|down_9|NZ_CP016391.1_2007210_2007837_+	pfam03596, Cad, Cadmium resistance transporter
