assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001683455.1_ASM168345v1	NZ_CP016396	Mycobacterium avium strain RCAD0278, complete genome	1	449083-449166	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,cas4,WYL	Orphan	CGGCCGGCGCCCGAGTTGTCGGCCG	25	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,cas4,WYL	NA|291aa|up_7|NZ_CP016396.1_442396_443269_-,NA	NA|124aa|up_9|NZ_CP016396.1_440167_440539_+	cd00781, ketosteroid_isomerase, ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon	NA|580aa|up_8|NZ_CP016396.1_440632_442372_+	pfam02254, TrkA_N, TrkA-N domain	NA|291aa|up_7|NZ_CP016396.1_442396_443269_-	NA	NA|293aa|up_6|NZ_CP016396.1_443330_444209_-	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|138aa|up_5|NZ_CP016396.1_444275_444689_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|132aa|up_4|NZ_CP016396.1_444740_445136_+	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|162aa|up_3|NZ_CP016396.1_445132_445618_-	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|617aa|up_2|NZ_CP016396.1_445676_447527_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|315aa|up_1|NZ_CP016396.1_447526_448471_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|130aa|up_0|NZ_CP016396.1_448690_449080_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|164aa|down_0|NZ_CP016396.1_449230_449722_-	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|325aa|down_1|NZ_CP016396.1_449870_450845_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|292aa|down_2|NZ_CP016396.1_450892_451768_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|612aa|down_3|NZ_CP016396.1_451764_453600_+	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|559aa|down_4|NZ_CP016396.1_453610_455287_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|415aa|down_5|NZ_CP016396.1_455273_456518_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|877aa|down_6|NZ_CP016396.1_456581_459212_-	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|384aa|down_7|NZ_CP016396.1_459208_460360_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|471aa|down_8|NZ_CP016396.1_460606_462019_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|168aa|down_9|NZ_CP016396.1_463698_464202_+	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
GCF_001683455.1_ASM168345v1	NZ_CP016396	Mycobacterium avium strain RCAD0278, complete genome	2	1942994-1943070	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,cas4,WYL	Orphan	GCGCGCCCATGGCGCTCGTCGCG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,cas4,WYL	NA|185aa|up_3|NZ_CP016396.1_1938108_1938663_-,NA|234aa|up_1|NZ_CP016396.1_1939627_1940329_-,NA|83aa|down_9|NZ_CP016396.1_1955221_1955470_+	NA|297aa|up_9|NZ_CP016396.1_1932351_1933242_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|242aa|up_8|NZ_CP016396.1_1933267_1933993_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|489aa|up_7|NZ_CP016396.1_1934051_1935518_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|370aa|up_6|NZ_CP016396.1_1935554_1936664_+	pfam09992, NAGPA, Phosphodiester glycosidase	NA|222aa|up_5|NZ_CP016396.1_1936656_1937322_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|252aa|up_4|NZ_CP016396.1_1937386_1938142_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|185aa|up_3|NZ_CP016396.1_1938108_1938663_-	NA	NA|324aa|up_2|NZ_CP016396.1_1938659_1939631_-	pfam06271, RDD, RDD family	NA|234aa|up_1|NZ_CP016396.1_1939627_1940329_-	NA	NA|517aa|up_0|NZ_CP016396.1_1940298_1941849_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|538aa|down_0|NZ_CP016396.1_1943074_1944688_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|522aa|down_1|NZ_CP016396.1_1944684_1946250_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|347aa|down_2|NZ_CP016396.1_1946246_1947287_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|435aa|down_3|NZ_CP016396.1_1947283_1948588_-	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|290aa|down_4|NZ_CP016396.1_1948593_1949463_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|down_5|NZ_CP016396.1_1949464_1950280_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|147aa|down_6|NZ_CP016396.1_1953031_1953472_-	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|162aa|down_7|NZ_CP016396.1_1953515_1954001_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|371aa|down_8|NZ_CP016396.1_1954015_1955128_+	cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)	NA|83aa|down_9|NZ_CP016396.1_1955221_1955470_+	NA
GCF_001683455.1_ASM168345v1	NZ_CP016396	Mycobacterium avium strain RCAD0278, complete genome	3	3360027-3360117	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,cas4,WYL	Orphan	CGCGCCGCGCGGCGGCGCGCATCGTCGCCGGGC	33	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,cas4,WYL	NA|109aa|up_7|NZ_CP016396.1_3353380_3353707_-,NA	NA|508aa|up_9|NZ_CP016396.1_3348620_3350144_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|1076aa|up_8|NZ_CP016396.1_3350140_3353368_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|109aa|up_7|NZ_CP016396.1_3353380_3353707_-	NA	NA|260aa|up_6|NZ_CP016396.1_3353826_3354606_+	PRK07231, FabG-like, SDR family oxidoreductase	NA|401aa|up_5|NZ_CP016396.1_3354666_3355869_+	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins	NA|247aa|up_4|NZ_CP016396.1_3355857_3356598_-	pfam01738, DLH, Dienelactone hydrolase family	NA|267aa|up_3|NZ_CP016396.1_3356640_3357441_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|182aa|up_2|NZ_CP016396.1_3357437_3357983_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|245aa|up_1|NZ_CP016396.1_3358052_3358787_+	pfam05103, DivIVA, DivIVA protein	NA|403aa|up_0|NZ_CP016396.1_3358817_3360026_+	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|251aa|down_0|NZ_CP016396.1_3360131_3360884_+	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed	NA|301aa|down_1|NZ_CP016396.1_3360927_3361830_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|559aa|down_2|NZ_CP016396.1_3361849_3363526_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|291aa|down_3|NZ_CP016396.1_3363634_3364507_-	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|277aa|down_4|NZ_CP016396.1_3364512_3365343_-	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|105aa|down_5|NZ_CP016396.1_3365342_3365657_-	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|775aa|down_6|NZ_CP016396.1_3366023_3368348_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|181aa|down_7|NZ_CP016396.1_3368434_3368977_-	PRK07922, PRK07922, amino-acid N-acetyltransferase	NA|191aa|down_8|NZ_CP016396.1_3369042_3369615_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|109aa|down_9|NZ_CP016396.1_3369742_3370069_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001683455.1_ASM168345v1	NZ_CP016396	Mycobacterium avium strain RCAD0278, complete genome	4	4494778-4494869	4	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,cas4,WYL	Orphan	TTCCTCGCTGCGCTTGCGTGCCTTCT	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,cas4,WYL	NA|203aa|up_8|NZ_CP016396.1_4486016_4486625_+,NA|222aa|up_5|NZ_CP016396.1_4488676_4489342_-,NA	NA|361aa|up_9|NZ_CP016396.1_4484825_4485908_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|203aa|up_8|NZ_CP016396.1_4486016_4486625_+	NA	NA|210aa|up_7|NZ_CP016396.1_4486632_4487262_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|408aa|up_6|NZ_CP016396.1_4487355_4488579_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|222aa|up_5|NZ_CP016396.1_4488676_4489342_-	NA	NA|506aa|up_4|NZ_CP016396.1_4489435_4490953_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|666aa|up_3|NZ_CP016396.1_4490971_4492969_+	pfam02958, EcKinase, Ecdysteroid kinase	NA|165aa|up_2|NZ_CP016396.1_4492965_4493460_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|130aa|up_1|NZ_CP016396.1_4493540_4493930_+	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|193aa|up_0|NZ_CP016396.1_4493960_4494539_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|down_0|NZ_CP016396.1_4495655_4496216_+	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|267aa|down_1|NZ_CP016396.1_4496215_4497016_+	pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain	NA|117aa|down_2|NZ_CP016396.1_4497029_4497380_-	pfam13564, DoxX_2, DoxX-like family	NA|311aa|down_3|NZ_CP016396.1_4497548_4498481_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|443aa|down_4|NZ_CP016396.1_4498546_4499875_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|315aa|down_5|NZ_CP016396.1_4499871_4500816_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|281aa|down_6|NZ_CP016396.1_4500802_4501645_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|362aa|down_7|NZ_CP016396.1_4501647_4502733_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|323aa|down_8|NZ_CP016396.1_4502726_4503695_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|96aa|down_9|NZ_CP016396.1_4503720_4504008_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)
GCF_001683455.1_ASM168345v1	NZ_CP016396	Mycobacterium avium strain RCAD0278, complete genome	5	4560327-4560425	5	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,cas4,WYL	Orphan	CGGTTGCGGCCCGACCCCCAGCGG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,cas4,WYL	NA,NA	NA|273aa|up_9|NZ_CP016396.1_4551856_4552675_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|198aa|up_8|NZ_CP016396.1_4552782_4553376_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|295aa|up_7|NZ_CP016396.1_4553396_4554281_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|607aa|up_6|NZ_CP016396.1_4554425_4556246_+	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|218aa|up_5|NZ_CP016396.1_4556269_4556923_-	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|237aa|up_4|NZ_CP016396.1_4556968_4557679_-	PRK07577, PRK07577, SDR family oxidoreductase	NA|146aa|up_3|NZ_CP016396.1_4557860_4558298_-	pfam00553, CBM_2, Cellulose binding domain	NA|281aa|up_2|NZ_CP016396.1_4558521_4559364_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|134aa|up_1|NZ_CP016396.1_4559317_4559719_+	cd08355, TioX_like, Micromonospora sp	NA|104aa|up_0|NZ_CP016396.1_4559869_4560181_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|492aa|down_0|NZ_CP016396.1_4561220_4562696_+	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|392aa|down_1|NZ_CP016396.1_4562692_4563868_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|410aa|down_2|NZ_CP016396.1_4563864_4565094_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|148aa|down_3|NZ_CP016396.1_4565258_4565702_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|down_4|NZ_CP016396.1_4565762_4566143_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|140aa|down_5|NZ_CP016396.1_4566255_4566675_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|107aa|down_6|NZ_CP016396.1_4566987_4567308_+	pfam00226, DnaJ, DnaJ domain	NA|469aa|down_7|NZ_CP016396.1_4567360_4568767_-	pfam00668, Condensation, Condensation domain	NA|186aa|down_8|NZ_CP016396.1_4569416_4569974_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|254aa|down_9|NZ_CP016396.1_4570021_4570783_-	PRK06500, PRK06500, SDR family oxidoreductase
