The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016324	Vibrio cholerae 2740-80 chromosome 1, complete sequence	2987030	239397	311249	2987030	head,transposase,plate,protease,tail	Vibrio_phage(85.42%)	87	NA	NA
WP_000208249.1|239397_239955_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001293366.1|240020_241352_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	28.4	3.7e-40
WP_001066162.1|241455_242373_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000456236.1|242447_242963_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
WP_001887306.1|243049_244432_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_001254176.1|244549_245323_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_001133286.1|245566_245917_+	5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA	NA	NA	NA	NA
WP_000058339.1|245936_246377_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_000188676.1|246503_246863_-	DUF3135 domain-containing protein	NA	NA	NA	NA	NA
WP_000859357.1|247001_247619_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_001026274.1|247978_248269_+	co-chaperone GroES	NA	A0A221S331	uncultured_virus	38.3	6.5e-11
WP_000729136.1|248322_249957_+	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.1	2.1e-191
WP_001039513.1|250167_250728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001120173.1|250764_251787_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA	NA
WP_000246893.1|251819_252386_+	elongation factor P	NA	NA	NA	NA	NA
WP_000611152.1|252499_252862_-	fumarate reductase subunit FrdD	NA	NA	NA	NA	NA
WP_000071094.1|252872_253256_-	fumarate reductase subunit FrdC	NA	NA	NA	NA	NA
WP_001276017.1|253258_254017_-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_001166592.1|254016_255825_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA	NA
WP_000185039.1|256133_257108_+	elongation factor P--(R)-beta-lysine ligase	NA	A0A1V0SAC0	Catovirus	26.6	4.3e-22
WP_001158897.1|257237_257672_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_000796512.1|257838_258303_+	protein-export chaperone SecB	NA	NA	NA	NA	NA
WP_000005325.1|258492_259527_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000806519.1|259599_260421_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_000056565.1|260536_261076_-	PadR family transcriptional regulator	NA	A0A2I7RSZ7	Vibrio_phage	33.6	3.5e-10
WP_001003592.1|261434_264065_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_001130865.1|264271_265408_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_000921321.1|265563_266565_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_001281558.1|266574_267363_+	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_000049171.1|267438_268653_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001240133.1|268885_270262_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_000742074.1|270512_270767_-	DUF3624 domain-containing protein	NA	NA	NA	NA	NA
WP_000809405.1|271001_272456_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_000495223.1|272527_273259_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	55.9	3.2e-46
WP_001025909.1|273398_274292_+	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
WP_000668733.1|274365_276843_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
WP_001065600.1|277610_278147_-	hypothetical protein	NA	H9C146	Vibrio_phage	58.1	6.8e-30
WP_001895339.1|278146_278998_-	hypothetical protein	NA	Q8HA52	Vibrio_phage	60.4	1.9e-42
WP_000510163.1|278997_279585_-	DUF2313 domain-containing protein	NA	A0A2I7S9L6	Vibrio_phage	79.5	2.1e-93
WP_001147110.1|279569_280637_-|plate	baseplate J/gp47 family protein	plate	A0A2I7S9E5	Vibrio_phage	72.1	1.6e-147
WP_000095018.1|280626_281076_-	phage GP46 family protein	NA	M4MB61	Vibrio_phage	73.6	1.1e-54
WP_170826454.1|281078_281696_-|plate	phage baseplate assembly protein V	plate	M4MCP6	Vibrio_phage	70.2	4.0e-74
WP_001286435.1|281689_282769_-	hypothetical protein	NA	M4M9L5	Vibrio_phage	75.4	3.0e-157
WP_000863380.1|282761_284081_-	DNA circularization N-terminal domain-containing protein	NA	A0A2I7S9E8	Vibrio_phage	68.0	5.0e-167
WP_162493705.1|284092_285715_-	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	52.6	6.0e-138
WP_000996598.1|285921_286281_-|tail	phage tail assembly protein	tail	A0A2I7S9E0	Vibrio_phage	64.1	5.0e-37
WP_001895328.1|286280_286634_-|tail	phage tail tube protein	tail	A0A2I7S9D5	Vibrio_phage	69.2	7.9e-43
WP_001128141.1|286648_288133_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	M1Q565	Vibrio_phage	72.3	1.5e-207
WP_000437435.1|288135_288336_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_000100991.1|288349_288949_-	hypothetical protein	NA	M4MHF0	Vibrio_phage	61.2	6.4e-69
WP_000513061.1|288945_289488_-	phage virion morphogenesis protein	NA	A0A2I7S9D7	Vibrio_phage	74.9	3.3e-72
WP_001029276.1|289487_289922_-	DUF1320 domain-containing protein	NA	A0A2I7S9E9	Vibrio_phage	88.2	9.6e-67
WP_000004756.1|289927_290503_-	hypothetical protein	NA	M4M9M3	Vibrio_phage	54.5	4.0e-20
WP_001218331.1|290591_291491_-|head	Mu-like prophage major head subunit gpT family protein	head	M4MB71	Vibrio_phage	81.4	2.6e-146
WP_001262460.1|291493_292450_-	hypothetical protein	NA	M1Q578	Vibrio_phage	59.8	4.7e-98
WP_001249579.1|292782_293067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000638762.1|293066_293702_-	hypothetical protein	NA	A0A1V0E8A2	Vibrio_phage	47.3	1.7e-40
WP_000638754.1|293698_294211_-	hypothetical protein	NA	A0A0F6N5P8	Escherichia_phage	45.6	5.3e-32
WP_000246042.1|294207_294456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001895334.1|294467_295241_-	hypothetical protein	NA	M1PVV7	Vibrio_phage	75.5	1.3e-114
WP_000027033.1|295233_296793_-	DUF935 domain-containing protein	NA	M4M9P3	Vibrio_phage	76.1	3.5e-228
WP_001105344.1|296789_298355_-	hypothetical protein	NA	M4MHG0	Vibrio_phage	78.0	4.5e-231
WP_001195537.1|298355_298922_-	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	55.0	3.2e-46
WP_000008606.1|298933_299224_-	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	82.3	3.9e-40
WP_000362983.1|299232_299532_-	DUF2730 family protein	NA	M1Q558	Vibrio_phage	70.0	1.1e-29
WP_001281317.1|299531_299762_-	TraR/DksA C4-type zinc finger protein	NA	M4MHG5	Vibrio_phage	63.2	8.8e-19
WP_001120998.1|299758_300358_-	hypothetical protein	NA	M1NVP4	Vibrio_phage	57.3	5.8e-46
WP_000493682.1|300620_301178_-	hypothetical protein	NA	A0A2I7S9B9	Vibrio_phage	72.1	1.8e-70
WP_001029055.1|301262_301679_-	hypothetical protein	NA	M4MHG9	Vibrio_phage	50.0	6.3e-31
WP_000837433.1|301757_302204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000040562.1|302193_302739_-	regulatory protein GemA	NA	A0A2I7S9B8	Vibrio_phage	58.2	4.5e-53
WP_000404914.1|302751_303030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000466681.1|303032_303266_-	hypothetical protein	NA	M4M9N5	Vibrio_phage	66.2	4.1e-24
WP_000762331.1|303345_303876_-	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	42.9	2.2e-28
WP_000856884.1|303872_304142_-	DUF3850 domain-containing protein	NA	C1KFE1	Lactobacillus_virus	47.6	2.5e-12
WP_001895326.1|304144_304339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000413231.1|304491_304689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000551393.1|304672_304915_-	hypothetical protein	NA	M4MCS5	Vibrio_phage	62.0	4.2e-19
WP_000512064.1|304907_305180_-	hypothetical protein	NA	A0A2I7S9G2	Vibrio_phage	61.2	2.9e-21
WP_001192102.1|305189_305804_-	DUF3164 family protein	NA	M4MHH7	Vibrio_phage	79.6	2.0e-86
WP_001032752.1|305953_306328_-	hypothetical protein	NA	M4MB90	Vibrio_phage	59.0	2.9e-27
WP_001216028.1|306337_306907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000157299.1|306916_307141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000800334.1|307148_308093_-	AAA family ATPase	NA	M4M9P4	Vibrio_phage	73.7	1.1e-126
WP_001895336.1|308119_310123_-|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A2I7S9A8	Vibrio_phage	69.8	2.2e-275
WP_000373567.1|310134_310359_-	helix-turn-helix domain-containing protein	NA	M1PVU4	Vibrio_phage	61.9	2.3e-16
WP_000005494.1|310511_311249_+	transcriptional regulator	NA	A0A2I7S9A5	Vibrio_phage	61.3	1.4e-81
>prophage 2
NZ_CP016324	Vibrio cholerae 2740-80 chromosome 1, complete sequence	2987030	687325	693942	2987030		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|687325_688459_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366574.1|688470_689721_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|689820_690270_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|690295_691399_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|691403_692057_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|692097_693207_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|693471_693942_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 3
NZ_CP016324	Vibrio cholerae 2740-80 chromosome 1, complete sequence	2987030	2331634	2338827	2987030		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2331634_2332063_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2332266_2333556_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2333775_2333970_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2334018_2334357_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|2334370_2336221_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|2336244_2336760_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2336808_2337132_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2337192_2337576_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2337612_2338827_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 4
NZ_CP016324	Vibrio cholerae 2740-80 chromosome 1, complete sequence	2987030	2570450	2577674	2987030		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2570450_2571338_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001895515.1|2571605_2574194_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	25.7	2.2e-33
WP_000116737.1|2574286_2575294_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177568.1|2575367_2576303_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2576302_2576929_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2576921_2577674_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
