assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001682295.1_ASM168229v1	NZ_CP012749	Rhodococcus sp. 008 chromosome, complete genome	1	2374506-2374617	1	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,RT,cas4,DinG	Orphan	TGAACGGGTTGTCGACGAGGGCGTTGGTGCC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,RT,cas4,DinG,csf3gr5,csf2gr7,PD-DExK	NA,NA|151aa|down_6|NZ_CP012749.1_2379914_2380367_-,NA|308aa|down_8|NZ_CP012749.1_2382085_2383009_-	NA|401aa|up_9|NZ_CP012749.1_2364280_2365483_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|374aa|up_8|NZ_CP012749.1_2365522_2366644_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|247aa|up_7|NZ_CP012749.1_2366640_2367381_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|147aa|up_6|NZ_CP012749.1_2367492_2367933_+	pfam13426, PAS_9, PAS domain	NA|209aa|up_5|NZ_CP012749.1_2367939_2368566_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|264aa|up_4|NZ_CP012749.1_2368797_2369589_+	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|431aa|up_3|NZ_CP012749.1_2369535_2370828_-	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component	NA|447aa|up_2|NZ_CP012749.1_2370824_2372165_-	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component	NA|477aa|up_1|NZ_CP012749.1_2372157_2373588_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|271aa|up_0|NZ_CP012749.1_2373584_2374397_-	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain	NA|420aa|down_0|NZ_CP012749.1_2374772_2376032_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|356aa|down_1|NZ_CP012749.1_2376116_2377184_+	pfam01032, FecCD, FecCD transport family	NA|265aa|down_2|NZ_CP012749.1_2377180_2377975_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|down_3|NZ_CP012749.1_2377971_2378952_+	cd01148, TroA_a, Metal binding protein TroA_a	NA|228aa|down_4|NZ_CP012749.1_2378948_2379632_+	TIGR03605, antibiot_sagB, SagB-type dehydrogenase domain	NA|95aa|down_5|NZ_CP012749.1_2379633_2379918_-	pfam09851, SHOCT, Short C-terminal domain	NA|151aa|down_6|NZ_CP012749.1_2379914_2380367_-	NA	NA|549aa|down_7|NZ_CP012749.1_2380370_2382017_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|308aa|down_8|NZ_CP012749.1_2382085_2383009_-	NA	NA|196aa|down_9|NZ_CP012749.1_2383351_2383939_+	pfam04978, DUF664, Protein of unknown function (DUF664)
GCF_001682295.1_ASM168229v1	NZ_CP015203	Rhodococcus sp. 008 plasmid pR8L1, complete sequence	1	194576-194652	1	CRISPRCasFinder	no	csa3	csa3,csf3gr5,csf2gr7,PD-DExK	Type I-A	CGGTGACGGCGTAGCCGTCACCGACG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,RT,cas4,DinG,csf3gr5,csf2gr7,PD-DExK	NA|159aa|up_0|NZ_CP015203.1_191077_191554_-,NA|108aa|down_0|NZ_CP015203.1_195949_196273_-,NA|56aa|down_3|NZ_CP015203.1_199726_199894_+,NA|110aa|down_5|NZ_CP015203.1_202748_203078_-,NA|103aa|down_9|NZ_CP015203.1_209478_209787_+	NA|255aa|up_9|NZ_CP015203.1_178459_179224_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|394aa|up_8|NZ_CP015203.1_179373_180555_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|253aa|up_7|NZ_CP015203.1_180551_181310_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|90aa|up_6|NZ_CP015203.1_181450_181720_+	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|528aa|up_5|NZ_CP015203.1_181801_183385_+	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|76aa|up_4|NZ_CP015203.1_183899_184127_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|768aa|up_3|NZ_CP015203.1_184175_186479_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|821aa|up_2|NZ_CP015203.1_186842_189305_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|243aa|up_1|NZ_CP015203.1_189301_190030_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|159aa|up_0|NZ_CP015203.1_191077_191554_-	NA	NA|108aa|down_0|NZ_CP015203.1_195949_196273_-	NA	csa3|121aa|down_1|NZ_CP015203.1_197051_197414_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|692aa|down_2|NZ_CP015203.1_197455_199531_+	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron	NA|56aa|down_3|NZ_CP015203.1_199726_199894_+	NA	NA|222aa|down_4|NZ_CP015203.1_200166_200832_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|110aa|down_5|NZ_CP015203.1_202748_203078_-	NA	NA|329aa|down_6|NZ_CP015203.1_203614_204601_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|448aa|down_7|NZ_CP015203.1_205532_206876_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|541aa|down_8|NZ_CP015203.1_206919_208542_+	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|103aa|down_9|NZ_CP015203.1_209478_209787_+	NA
