assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001679985.1_ASM167998v1	NZ_CP015912	Escherichia coli strain 210205630 chromosome, complete genome	1	998664-998804	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCTGATGCGACGCTAACGCGTCTTATCAGACCTACAAGATCC	44	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,cas14j	NA|367aa|up_8|NZ_CP015912.1_987794_988895_-,NA	NA|340aa|up_9|NZ_CP015912.1_986778_987798_-	pfam11380, Stealth_CR2, Stealth protein CR2, conserved region 2	NA|367aa|up_8|NZ_CP015912.1_987794_988895_-	NA	NA|311aa|up_7|NZ_CP015912.1_988891_989824_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|334aa|up_6|NZ_CP015912.1_989823_990825_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|416aa|up_5|NZ_CP015912.1_990814_992062_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|298aa|up_4|NZ_CP015912.1_992411_993305_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|332aa|up_3|NZ_CP015912.1_993547_994543_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|465aa|up_2|NZ_CP015912.1_994700_996095_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP015912.1_996105_997326_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP015912.1_997322_998603_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP015912.1_998878_1000357_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP015912.1_1000358_1001753_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP015912.1_1001888_1003259_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP015912.1_1003451_1004888_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP015912.1_1004890_1006114_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP015912.1_1006110_1006590_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP015912.1_1006592_1007558_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP015912.1_1007560_1008682_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP015912.1_1008707_1009256_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP015912.1_1009271_1010018_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_001679985.1_ASM167998v1	NZ_CP015912	Escherichia coli strain 210205630 chromosome, complete genome	2	1763932-1764204	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,3,3	4	TypeI-E	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,cas14j	NA,NA	NA|254aa|up_9|NZ_CP015912.1_1755805_1756567_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP015912.1_1756547_1757597_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP015912.1_1757593_1758073_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP015912.1_1758072_1758783_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP015912.1_1758801_1759113_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP015912.1_1759306_1759630_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP015912.1_1759679_1760285_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP015912.1_1760284_1761712_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP015912.1_1761713_1762622_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP015912.1_1762873_1763911_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP015912.1_1764300_1764594_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP015912.1_1764593_1765514_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP015912.1_1765510_1766161_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP015912.1_1766142_1766889_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP015912.1_1766899_1767955_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP015912.1_1767966_1768503_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP015912.1_1768499_1770062_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP015912.1_1770159_1772859_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP015912.1_1773052_1773205_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP015912.1_1773469_1774204_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001679985.1_ASM167998v1	NZ_CP015912	Escherichia coli strain 210205630 chromosome, complete genome	3	1789904-1791152	3,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,27,29	0	0	NA	NA	I-E:I-E:I-E:I-E	20,20,18,18	20	Unclear	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,cas14j	NA,NA|47aa|down_1|NZ_CP015912.1_1792301_1792442_+	NA|424aa|up_9|NZ_CP015912.1_1778547_1779819_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP015912.1_1779809_1780070_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP015912.1_1780086_1780662_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NZ_CP015912.1_1780809_1781703_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP015912.1_1781666_1782446_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP015912.1_1782423_1783833_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP015912.1_1783854_1785309_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP015912.1_1785378_1786164_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP015912.1_1786482_1787760_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP015912.1_1787786_1789265_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP015912.1_1791491_1792163_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP015912.1_1792301_1792442_+	NA	NA|433aa|down_2|NZ_CP015912.1_1793387_1794686_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP015912.1_1794773_1796411_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP015912.1_1796638_1797430_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP015912.1_1797500_1797836_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP015912.1_1797835_1798084_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP015912.1_1798161_1800396_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP015912.1_1800443_1801745_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP015912.1_1801801_1804558_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_001679985.1_ASM167998v1	NZ_CP015912	Escherichia coli strain 210205630 chromosome, complete genome	4	4205740-4205836	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,cas14j	NA,NA	NA|454aa|up_9|NZ_CP015912.1_4193619_4194981_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP015912.1_4195037_4196339_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP015912.1_4196360_4197506_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP015912.1_4197634_4198420_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP015912.1_4198430_4199666_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP015912.1_4199687_4200737_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP015912.1_4201053_4202721_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP015912.1_4202730_4203990_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP015912.1_4204000_4204816_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP015912.1_4204812_4205706_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP015912.1_4205900_4206968_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP015912.1_4206964_4207474_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP015912.1_4207591_4208314_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP015912.1_4208316_4208811_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP015912.1_4208984_4210370_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP015912.1_4210405_4210927_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP015912.1_4211034_4211247_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP015912.1_4211248_4212115_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP015912.1_4212595_4213138_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP015912.1_4213357_4214050_+	PRK15195, PRK15195, molecular chaperone FimC
