assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001678925.1_ASM167892v1	NZ_CP013031	Escherichia coli strain H1827/12 chromosome, complete genome	1	600788-600937	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3	NA|551aa|up_6|NZ_CP013031.1_592020_593673_+,NA	NA|238aa|up_9|NZ_CP013031.1_589923_590637_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP013031.1_590707_591301_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP013031.1_591445_591898_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|551aa|up_6|NZ_CP013031.1_592020_593673_+	NA	NA|335aa|up_5|NZ_CP013031.1_593745_594750_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP013031.1_594911_595328_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP013031.1_595373_595877_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP013031.1_596069_597266_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP013031.1_597321_600177_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP013031.1_600176_600620_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP013031.1_600973_602485_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP013031.1_602751_603852_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP013031.1_603851_604934_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP013031.1_605094_606597_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP013031.1_606674_607673_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP013031.1_607739_609059_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP013031.1_609121_609886_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP013031.1_609909_610941_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP013031.1_611157_611721_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP013031.1_611724_612744_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_001678925.1_ASM167892v1	NZ_CP013031	Escherichia coli strain H1827/12 chromosome, complete genome	2	1116939-1117085	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3	Orphan	TCCGGCCTACGGATGGCGCGAGAATTTGTAGGCCTGATAAGACGCG	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3	NA,NA	NA|418aa|up_9|NZ_CP013031.1_1103910_1105164_-	PRK09528, lacY, galactoside permease; Reviewed	NA|1025aa|up_8|NZ_CP013031.1_1105215_1108290_-	PRK09525, lacZ, beta-galactosidase	NA|361aa|up_7|NZ_CP013031.1_1108412_1109495_-	PRK09526, lacI, lac repressor; Reviewed	NA|316aa|up_6|NZ_CP013031.1_1109571_1110519_-	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|555aa|up_5|NZ_CP013031.1_1110595_1112260_+	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|315aa|up_4|NZ_CP013031.1_1112261_1113206_+	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|289aa|up_3|NZ_CP013031.1_1113223_1114090_+	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|270aa|up_2|NZ_CP013031.1_1114099_1114909_+	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|317aa|up_1|NZ_CP013031.1_1114905_1115856_+	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|338aa|up_0|NZ_CP013031.1_1115852_1116866_+	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|404aa|down_0|NZ_CP013031.1_1117243_1118455_+	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|180aa|down_1|NZ_CP013031.1_1118556_1119096_+	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|278aa|down_2|NZ_CP013031.1_1119321_1120155_-	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|370aa|down_3|NZ_CP013031.1_1120247_1121357_-	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|92aa|down_4|NZ_CP013031.1_1121391_1121667_-	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|258aa|down_5|NZ_CP013031.1_1121853_1122627_-	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|321aa|down_6|NZ_CP013031.1_1123569_1124532_+	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|256aa|down_7|NZ_CP013031.1_1124544_1125312_+	PRK11248, tauB, taurine ABC transporter ATP-binding subunit	NA|276aa|down_8|NZ_CP013031.1_1125308_1126136_+	PRK10160, PRK10160, taurine ABC transporter permease TauC	NA|284aa|down_9|NZ_CP013031.1_1126132_1126984_+	PRK09553, tauD, taurine dioxygenase; Reviewed
GCF_001678925.1_ASM167892v1	NZ_CP013031	Escherichia coli strain H1827/12 chromosome, complete genome	3	3121324-3121439	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3	Orphan	GCGTAAACGCCTTATCCGGCCTACGGCTC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3	NA,NA	NA|395aa|up_9|NZ_CP013031.1_3100262_3101447_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP013031.1_3101520_3102297_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP013031.1_3102301_3103951_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|NZ_CP013031.1_3103951_3108466_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP013031.1_3108489_3109113_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP013031.1_3109109_3110798_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP013031.1_3110946_3113574_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP013031.1_3113720_3114443_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP013031.1_3114570_3118323_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP013031.1_3119018_3121304_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP013031.1_3121545_3122676_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP013031.1_3122675_3122930_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP013031.1_3122983_3123634_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP013031.1_3124096_3125173_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP013031.1_3125177_3126536_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP013031.1_3126808_3128437_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP013031.1_3128426_3129686_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP013031.1_3129682_3130873_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|301aa|down_8|NZ_CP013031.1_3131065_3131968_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NZ_CP013031.1_3132008_3132812_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_001678925.1_ASM167892v1	NZ_CP013031	Escherichia coli strain H1827/12 chromosome, complete genome	4	3586830-3586974	4	CRISPRCasFinder	no	csa3	DEDDh,DinG,cas3,c2c9_V-U4,csa3	Type I-A	CACAATGCCTGATGCGACGCTGGAGCGTCTTATCATGCCTACAAA	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3	NA,NA	NA|150aa|up_9|NZ_CP013031.1_3577820_3578270_+	pfam06610, AlaE, L-alanine exporter	NA|115aa|up_8|NZ_CP013031.1_3578306_3578651_-	PRK10556, PRK10556, hypothetical protein; Provisional	NA|110aa|up_7|NZ_CP013031.1_3578802_3579132_+	PRK10132, PRK10132, hypothetical protein; Provisional	NA|82aa|up_6|NZ_CP013031.1_3579379_3579625_+	PRK10329, PRK10329, glutaredoxin-like protein NrdH	NA|137aa|up_5|NZ_CP013031.1_3579621_3580032_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|715aa|up_4|NZ_CP013031.1_3580004_3582149_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|320aa|up_3|NZ_CP013031.1_3582158_3583118_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|401aa|up_2|NZ_CP013031.1_3583471_3584674_+	PRK10070, PRK10070, proline/glycine betaine ABC transporter ATP-binding protein ProV	NA|355aa|up_1|NZ_CP013031.1_3584666_3585731_+	PRK10952, PRK10952, proline/glycine betaine ABC transporter permease ProW	NA|331aa|up_0|NZ_CP013031.1_3585788_3586781_+	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX	NA|395aa|down_0|NZ_CP013031.1_3587072_3588257_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|246aa|down_1|NZ_CP013031.1_3588380_3589118_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|112aa|down_2|NZ_CP013031.1_3589107_3589443_+	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|177aa|down_3|NZ_CP013031.1_3589533_3590064_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|391aa|down_4|NZ_CP013031.1_3590190_3591363_+	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|513aa|down_5|NZ_CP013031.1_3591379_3592918_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|172aa|down_6|NZ_CP013031.1_3592981_3593497_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|519aa|down_7|NZ_CP013031.1_3593646_3595203_-	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|143aa|down_8|NZ_CP013031.1_3595275_3595704_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|189aa|down_9|NZ_CP013031.1_3595700_3596267_-	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase
GCF_001678925.1_ASM167892v1	NZ_CP013031	Escherichia coli strain H1827/12 chromosome, complete genome	5	3656466-3656738	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3	NA,NA	NA|254aa|up_9|NZ_CP013031.1_3648278_3649040_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP013031.1_3649020_3650070_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP013031.1_3650066_3650546_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP013031.1_3650545_3651256_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP013031.1_3651274_3651586_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP013031.1_3651779_3652103_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP013031.1_3652152_3652758_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP013031.1_3652757_3654185_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP013031.1_3654186_3655095_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP013031.1_3655346_3656384_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|371aa|down_0|NZ_CP013031.1_3656815_3657928_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|down_1|NZ_CP013031.1_3658120_3658273_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_2|NZ_CP013031.1_3658537_3659272_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_3|NZ_CP013031.1_3659345_3661058_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_4|NZ_CP013031.1_3661057_3662857_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|down_5|NZ_CP013031.1_3663175_3663538_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|down_6|NZ_CP013031.1_3663615_3664887_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|down_7|NZ_CP013031.1_3664877_3665138_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|down_8|NZ_CP013031.1_3665154_3665730_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|down_9|NZ_CP013031.1_3665877_3666738_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
GCF_001678925.1_ASM167892v1	NZ_CP013031	Escherichia coli strain H1827/12 chromosome, complete genome	6	3674972-3675855	6,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GTCGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,31	0	0	NA	NA	I-E:I-E:I-E:I-E	14,14,10,10	14	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3	NA,NA|47aa|down_1|NZ_CP013031.1_3677004_3677145_+	NA|424aa|up_9|NZ_CP013031.1_3663615_3664887_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP013031.1_3664877_3665138_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP013031.1_3665154_3665730_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP013031.1_3665877_3666738_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP013031.1_3666734_3667514_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP013031.1_3667491_3668901_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP013031.1_3668922_3670377_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP013031.1_3670446_3671232_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP013031.1_3671550_3672828_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP013031.1_3672854_3674333_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP013031.1_3676194_3676866_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP013031.1_3677004_3677145_+	NA	NA|291aa|down_2|NZ_CP013031.1_3677158_3678031_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP013031.1_3678090_3679389_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP013031.1_3679476_3681114_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP013031.1_3681341_3682133_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP013031.1_3682203_3682539_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP013031.1_3682538_3682787_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP013031.1_3682864_3685099_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP013031.1_3685146_3686448_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
