assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001677495.1_ASM167749v1	NZ_CP015228	Escherichia coli strain 09-00049 chromosome, complete genome	1	629828-629924	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP015228.1_617707_619069_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP015228.1_619125_620427_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP015228.1_620448_621594_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP015228.1_621722_622508_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP015228.1_622518_623754_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP015228.1_623775_624825_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP015228.1_625141_626809_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP015228.1_626818_628078_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP015228.1_628088_628904_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP015228.1_628900_629794_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP015228.1_629988_631056_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP015228.1_631052_631562_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP015228.1_631679_632402_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP015228.1_632404_632899_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP015228.1_633072_634458_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP015228.1_634493_635015_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP015228.1_635122_635335_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP015228.1_635336_636203_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP015228.1_636683_637226_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP015228.1_637445_638138_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_001677495.1_ASM167749v1	NZ_CP015228	Escherichia coli strain 09-00049 chromosome, complete genome	2	1201625-1201752	2	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CACATGAAGCCGCACAAACAACCGCACATGATGCCGCACATGATGAA	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|150aa|up_7|NZ_CP015228.1_1197165_1197615_-,NA|151aa|up_6|NZ_CP015228.1_1197911_1198364_-,NA|103aa|up_5|NZ_CP015228.1_1198366_1198675_-,NA|99aa|up_4|NZ_CP015228.1_1199113_1199410_-,NA|91aa|up_0|NZ_CP015228.1_1200919_1201192_+,NA|90aa|down_6|NZ_CP015228.1_1205295_1205565_+	NA|44aa|up_9|NZ_CP015228.1_1195853_1195985_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|323aa|up_8|NZ_CP015228.1_1196009_1196978_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|150aa|up_7|NZ_CP015228.1_1197165_1197615_-	NA	NA|151aa|up_6|NZ_CP015228.1_1197911_1198364_-	NA	NA|103aa|up_5|NZ_CP015228.1_1198366_1198675_-	NA	NA|99aa|up_4|NZ_CP015228.1_1199113_1199410_-	NA	NA|236aa|up_3|NZ_CP015228.1_1199450_1200158_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|75aa|up_2|NZ_CP015228.1_1200269_1200494_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|99aa|up_1|NZ_CP015228.1_1200600_1200897_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|91aa|up_0|NZ_CP015228.1_1200919_1201192_+	NA	NA|459aa|down_0|NZ_CP015228.1_1202138_1203515_+	TIGR00665, DnaB, replicative DNA helicase	NA|147aa|down_1|NZ_CP015228.1_1203789_1204230_+	pfam05772, NinB, NinB protein	NA|197aa|down_2|NZ_CP015228.1_1204226_1204817_+	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]	NA|58aa|down_3|NZ_CP015228.1_1204813_1204987_+	pfam17466, NinD, Family of unknown function	NA|61aa|down_4|NZ_CP015228.1_1204953_1205136_+	pfam05322, NinE, NINE Protein	NA|57aa|down_5|NZ_CP015228.1_1205132_1205303_+	pfam05810, NinF, NinF protein	NA|90aa|down_6|NZ_CP015228.1_1205295_1205565_+	NA	NA|97aa|down_7|NZ_CP015228.1_1205564_1205855_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|121aa|down_8|NZ_CP015228.1_1205851_1206214_+	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|63aa|down_9|NZ_CP015228.1_1206210_1206399_+	pfam06322, Phage_NinH, Phage NinH protein
GCF_001677495.1_ASM167749v1	NZ_CP015228	Escherichia coli strain 09-00049 chromosome, complete genome	3	3449470-3450168	1,3,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,10,9	11	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP015228.1_3441343_3442105_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP015228.1_3442085_3443135_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP015228.1_3443131_3443611_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP015228.1_3443610_3444321_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP015228.1_3444339_3444651_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP015228.1_3444844_3445168_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP015228.1_3445217_3445823_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP015228.1_3445822_3447250_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP015228.1_3447251_3448160_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP015228.1_3448411_3449449_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP015228.1_3450264_3450558_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP015228.1_3450554_3451478_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP015228.1_3451474_3452125_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP015228.1_3452106_3452853_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP015228.1_3452863_3453919_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP015228.1_3453930_3454467_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP015228.1_3454463_3456026_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP015228.1_3456123_3458823_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|371aa|down_8|NZ_CP015228.1_3459176_3460289_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|down_9|NZ_CP015228.1_3460365_3460518_-	pfam01848, HOK_GEF, Hok/gef family
GCF_001677495.1_ASM167749v1	NZ_CP015228	Escherichia coli strain 09-00049 chromosome, complete genome	4	3477217-3478465	4,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,26,29	0	0	NA	NA	I-E:I-E:I-E:I-E	20,20,18,18	20	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP015228.1_3479614_3479755_+	NA|424aa|up_9|NZ_CP015228.1_3465860_3467132_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP015228.1_3467122_3467383_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP015228.1_3467399_3467975_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP015228.1_3468122_3468983_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP015228.1_3468979_3469759_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP015228.1_3469736_3471146_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP015228.1_3471167_3472622_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP015228.1_3472691_3473477_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP015228.1_3473795_3475073_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP015228.1_3475099_3476578_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP015228.1_3478804_3479476_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP015228.1_3479614_3479755_+	NA	NA|291aa|down_2|NZ_CP015228.1_3479768_3480641_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP015228.1_3480700_3481999_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP015228.1_3482086_3483724_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP015228.1_3483951_3484743_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP015228.1_3484813_3485149_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP015228.1_3485148_3485397_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP015228.1_3485474_3487709_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP015228.1_3487756_3489058_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
