assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001677215.1_ASM167721v1	NZ_CP016193	Mycobacteroides abscessus strain FLAC055 chromosome, complete genome	1	709613-709732	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,cas4,WYL	Orphan	CCACCTCAGGGGTGGGCTCCGAGCGGGCCGGCTCAG	36	1	1	709649-709696	NZ_CP016193.1_709592-709639	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,cas4,WYL	NA|120aa|up_8|NZ_CP016193.1_700425_700785_+,NA|179aa|up_7|NZ_CP016193.1_700796_701333_+,NA|179aa|up_6|NZ_CP016193.1_701329_701866_+,NA|495aa|up_5|NZ_CP016193.1_701862_703347_+,NA|112aa|up_2|NZ_CP016193.1_705643_705979_-,NA|127aa|up_1|NZ_CP016193.1_706090_706471_-,NA|109aa|up_0|NZ_CP016193.1_706467_706794_-,NA	NA|406aa|up_9|NZ_CP016193.1_699211_700429_+	pfam15598, Imm61, Immunity protein 61	NA|120aa|up_8|NZ_CP016193.1_700425_700785_+	NA	NA|179aa|up_7|NZ_CP016193.1_700796_701333_+	NA	NA|179aa|up_6|NZ_CP016193.1_701329_701866_+	NA	NA|495aa|up_5|NZ_CP016193.1_701862_703347_+	NA	NA|253aa|up_4|NZ_CP016193.1_703368_704127_-	pfam14011, ESX-1_EspG, EspG family	NA|481aa|up_3|NZ_CP016193.1_704144_705587_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|112aa|up_2|NZ_CP016193.1_705643_705979_-	NA	NA|127aa|up_1|NZ_CP016193.1_706090_706471_-	NA	NA|109aa|up_0|NZ_CP016193.1_706467_706794_-	NA	NA|605aa|down_0|NZ_CP016193.1_710950_712765_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|581aa|down_1|NZ_CP016193.1_712771_714514_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|461aa|down_2|NZ_CP016193.1_715036_716419_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|501aa|down_3|NZ_CP016193.1_716454_717957_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|1326aa|down_4|NZ_CP016193.1_717953_721931_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|500aa|down_5|NZ_CP016193.1_722081_723581_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|499aa|down_6|NZ_CP016193.1_723577_725074_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|537aa|down_7|NZ_CP016193.1_725303_726914_+	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|109aa|down_8|NZ_CP016193.1_726937_727264_-	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|98aa|down_9|NZ_CP016193.1_727260_727554_-	PRK07948, PRK07948, putative monovalent cation/H+ antiporter subunit F; Reviewed
GCF_001677215.1_ASM167721v1	NZ_CP016193	Mycobacteroides abscessus strain FLAC055 chromosome, complete genome	2	1107365-1107452	2	CRISPRCasFinder	no	csa3	DEDDh,cas3,csa3,DinG,cas4,WYL	Type I-A	CGGCTGCTACAACGGCGTGTGCGGTGGCTGG	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,cas4,WYL	NA|194aa|up_9|NZ_CP016193.1_1097605_1098187_+,NA	NA|194aa|up_9|NZ_CP016193.1_1097605_1098187_+	NA	NA|363aa|up_8|NZ_CP016193.1_1098166_1099255_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|244aa|up_7|NZ_CP016193.1_1099279_1100011_+	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional	NA|367aa|up_6|NZ_CP016193.1_1100013_1101114_+	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|226aa|up_5|NZ_CP016193.1_1101110_1101788_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|801aa|up_4|NZ_CP016193.1_1101905_1104308_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|278aa|up_3|NZ_CP016193.1_1104337_1105171_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|72aa|up_2|NZ_CP016193.1_1105225_1105441_+	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|379aa|up_1|NZ_CP016193.1_1105463_1106600_+	pfam03583, LIP, Secretory lipase	NA|148aa|up_0|NZ_CP016193.1_1106636_1107080_+	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|307aa|down_0|NZ_CP016193.1_1107488_1108409_-	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|199aa|down_1|NZ_CP016193.1_1108467_1109064_+	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|671aa|down_2|NZ_CP016193.1_1109014_1111027_-	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters	NA|52aa|down_3|NZ_CP016193.1_1111187_1111343_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|507aa|down_4|NZ_CP016193.1_1111418_1112939_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|145aa|down_5|NZ_CP016193.1_1112919_1113354_+	pfam05610, DUF779, Protein of unknown function (DUF779)	NA|597aa|down_6|NZ_CP016193.1_1113447_1115238_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|249aa|down_7|NZ_CP016193.1_1115227_1115974_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|261aa|down_8|NZ_CP016193.1_1116099_1116882_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|402aa|down_9|NZ_CP016193.1_1116908_1118114_-	PRK03858, PRK03858, DNA polymerase IV; Validated
GCF_001677215.1_ASM167721v1	NZ_CP016193	Mycobacteroides abscessus strain FLAC055 chromosome, complete genome	3	1208209-1208340	1	PILER-CR	no		DEDDh,cas3,csa3,DinG,cas4,WYL	Orphan	GGCTACGGTCAGCAGCAACCCCAG	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,DinG,cas4,WYL	NA|201aa|up_2|NZ_CP016193.1_1204719_1205322_+,NA	NA|546aa|up_9|NZ_CP016193.1_1195246_1196884_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|273aa|up_8|NZ_CP016193.1_1196926_1197745_-	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|97aa|up_7|NZ_CP016193.1_1197788_1198079_-	PRK07857, PRK07857, chorismate mutase	NA|807aa|up_6|NZ_CP016193.1_1198374_1200795_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|324aa|up_5|NZ_CP016193.1_1200901_1201873_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|390aa|up_4|NZ_CP016193.1_1202370_1203540_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|301aa|up_3|NZ_CP016193.1_1203575_1204478_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|201aa|up_2|NZ_CP016193.1_1204719_1205322_+	NA	NA|283aa|up_1|NZ_CP016193.1_1205318_1206167_-	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|374aa|up_0|NZ_CP016193.1_1206286_1207408_+	TIGR04021, LLM_DMSO2_sfnG, dimethyl sulfone monooxygenase SfnG	NA|442aa|down_0|NZ_CP016193.1_1208631_1209957_+	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)	NA|213aa|down_1|NZ_CP016193.1_1209980_1210619_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|527aa|down_2|NZ_CP016193.1_1210588_1212169_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|618aa|down_3|NZ_CP016193.1_1212191_1214045_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|417aa|down_4|NZ_CP016193.1_1214351_1215602_+	pfam07883, Cupin_2, Cupin domain	NA|201aa|down_5|NZ_CP016193.1_1215555_1216158_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|262aa|down_6|NZ_CP016193.1_1216244_1217030_-	PRK07827, PRK07827, enoyl-CoA hydratase family protein	NA|390aa|down_7|NZ_CP016193.1_1217053_1218223_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|693aa|down_8|NZ_CP016193.1_1218219_1220298_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|532aa|down_9|NZ_CP016193.1_1220294_1221890_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain
GCF_001677215.1_ASM167721v1	NZ_CP016193	Mycobacteroides abscessus strain FLAC055 chromosome, complete genome	4	5033062-5033156	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,cas4,WYL	Orphan	GCCAGCCCGCTGAACCCCAACAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,cas4,WYL	NA|227aa|up_5|NZ_CP016193.1_5024853_5025534_-,NA|296aa|up_4|NZ_CP016193.1_5026370_5027258_-,NA	NA|474aa|up_9|NZ_CP016193.1_5019705_5021127_-	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only]	NA|502aa|up_8|NZ_CP016193.1_5021244_5022750_+	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only]	NA|306aa|up_7|NZ_CP016193.1_5022746_5023664_+	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase	NA|374aa|up_6|NZ_CP016193.1_5023660_5024782_+	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase	NA|227aa|up_5|NZ_CP016193.1_5024853_5025534_-	NA	NA|296aa|up_4|NZ_CP016193.1_5026370_5027258_-	NA	NA|757aa|up_3|NZ_CP016193.1_5027376_5029647_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|140aa|up_2|NZ_CP016193.1_5030083_5030503_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|201aa|up_1|NZ_CP016193.1_5030492_5031095_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|530aa|up_0|NZ_CP016193.1_5031138_5032728_-	PRK06188, PRK06188, acyl-CoA synthetase; Validated	NA|366aa|down_0|NZ_CP016193.1_5033218_5034316_-	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family	NA|222aa|down_1|NZ_CP016193.1_5034367_5035033_+	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|283aa|down_2|NZ_CP016193.1_5035042_5035891_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|287aa|down_3|NZ_CP016193.1_5035895_5036756_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|264aa|down_4|NZ_CP016193.1_5036847_5037639_+	PRK07814, PRK07814, SDR family oxidoreductase	NA|358aa|down_5|NZ_CP016193.1_5037651_5038725_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|197aa|down_6|NZ_CP016193.1_5038721_5039312_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|418aa|down_7|NZ_CP016193.1_5039434_5040688_+	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2	NA|161aa|down_8|NZ_CP016193.1_5040618_5041101_+	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|355aa|down_9|NZ_CP016193.1_5041166_5042231_+	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
