The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	3041447	289197	297148	3041447		uncultured_virus(33.33%)	11	NA	NA
WP_020064808.1|289197_290463_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	30.8	7.5e-35
WP_012671545.1|290590_291946_+	signal recognition particle protein	NA	D6PHS7	uncultured_phage	31.7	4.6e-06
WP_020064809.1|291968_292328_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_008726607.1|292360_292603_+	KH domain-containing protein	NA	NA	NA	NA	NA
WP_028331356.1|292599_293109_+	16S rRNA processing protein RimM	NA	NA	NA	NA	NA
WP_020064811.1|293235_293907_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	34.1	1.2e-12
WP_012671549.1|294021_294507_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	49.3	1.7e-32
WP_012671550.1|294512_294794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012671551.1|294797_296024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012671552.1|296255_296522_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	36.1	4.4e-06
WP_012671553.1|296635_297148_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.7	2.6e-31
>prophage 2
NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	3041447	1014848	1073445	3041447	coat,transposase,tRNA	Cafeteria_roenbergensis_virus(20.0%)	54	NA	NA
WP_020064354.1|1014848_1015754_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_020064355.1|1015883_1017323_+	dihydropyrimidinase	NA	NA	NA	NA	NA
WP_028331320.1|1017410_1018397_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_020064356.1|1018560_1019982_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_020064357.1|1020123_1021608_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_012669634.1|1021677_1022142_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_012669635.1|1022309_1023803_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_012669636.1|1023839_1024364_+	peptidase	NA	NA	NA	NA	NA
WP_020064359.1|1024509_1025307_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012669638.1|1025330_1026116_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012669639.1|1026209_1027496_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_012669640.1|1027678_1028107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020064361.1|1028169_1030545_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_020064362.1|1030605_1031130_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_020064363.1|1031120_1031684_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_020064364.1|1031881_1032697_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	46.0	3.7e-51
WP_020064365.1|1033187_1033868_+|coat	spore coat protein	coat	NA	NA	NA	NA
WP_020064366.1|1033857_1034247_+	GIY-YIG nuclease family protein	NA	G0T5A8	Wiseana_iridescent_virus	36.0	2.2e-06
WP_012669647.1|1034304_1035102_+	transketolase	NA	NA	NA	NA	NA
WP_020064367.1|1035143_1036061_+	transketolase family protein	NA	NA	NA	NA	NA
WP_012669649.1|1036138_1036318_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_012669650.1|1036337_1036553_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_012669651.1|1036632_1037163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020064368.1|1037303_1038206_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_020064369.1|1038220_1038562_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_012669654.1|1038555_1039521_-	HPr(Ser) kinase/phosphatase	NA	NA	NA	NA	NA
WP_020064370.1|1039520_1039985_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_020064371.1|1040022_1040799_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_020064372.1|1040815_1042120_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_012669658.1|1042112_1045403_-	DUF4132 domain-containing protein	NA	NA	NA	NA	NA
WP_020064373.1|1045478_1046315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028331322.1|1046382_1047141_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_020064375.1|1047217_1047967_-	uracil-DNA glycosylase	NA	A0A127AW33	Bacillus_phage	35.6	2.4e-20
WP_012669662.1|1048278_1049142_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012669663.1|1049199_1050705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012669664.1|1050953_1051859_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_020064376.1|1051963_1053811_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.8	8.9e-61
WP_020064377.1|1054091_1055279_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
WP_012669667.1|1055455_1056232_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012669668.1|1056319_1057162_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_020064378.1|1057465_1057840_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_080513314.1|1057891_1058227_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038369849.1|1058394_1059240_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_020064380.1|1059407_1060556_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012669673.1|1060796_1061684_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_020064381.1|1061699_1063040_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_020064382.1|1063180_1064110_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_020064383.1|1064250_1065063_+	DUF4037 domain-containing protein	NA	NA	NA	NA	NA
WP_012669677.1|1065175_1066195_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	31.4	9.3e-20
WP_020064384.1|1066367_1068791_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_012669679.1|1068817_1069216_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_020064385.1|1069376_1071218_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_012669681.1|1071236_1072355_-	SPASM domain-containing protein	NA	NA	NA	NA	NA
WP_020064386.1|1072551_1073445_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	3041447	1791692	1851560	3041447	head,tail,protease,tRNA,capsid,integrase	uncultured_Caudovirales_phage(22.22%)	49	1823696:1823712	1838424:1838440
WP_012670270.1|1791692_1793624_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	41.1	3.1e-141
WP_020063738.1|1793923_1794178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020063739.1|1794220_1794499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012670273.1|1794528_1795761_+	methyl-accepting chemotaxis receptor, signaling domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	62.3	1.7e-07
WP_020063740.1|1795864_1796827_+	class II fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_020063741.1|1797041_1797938_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_020063742.1|1798148_1798766_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_028331267.1|1799236_1800895_-	ankyrin repeat domain-containing protein	NA	A0A1V0QGR8	Shearwaterpox_virus	24.5	8.1e-05
WP_020063745.1|1801324_1802023_-	DUF4261 domain-containing protein	NA	NA	NA	NA	NA
WP_020063746.1|1802033_1803386_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_020063747.1|1803458_1805279_-	family 10 glycosylhydrolase	NA	NA	NA	NA	NA
WP_020063748.1|1805357_1807409_-	sugar-binding protein	NA	NA	NA	NA	NA
WP_028331268.1|1807478_1809239_-	peptidase S55	NA	NA	NA	NA	NA
WP_012670283.1|1809422_1810091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020063750.1|1810159_1811332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012670285.1|1811358_1811910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012670286.1|1811912_1812815_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_012670287.1|1812832_1814737_-	transpeptidase family protein	NA	NA	NA	NA	NA
WP_020063751.1|1815137_1816763_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012670289.1|1816859_1817855_-	lactate dehydrogenase	NA	A0A1V0SBV6	Catovirus	30.4	3.3e-22
WP_020063752.1|1817978_1819007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012670291.1|1819194_1819887_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_020063753.1|1819924_1821619_+	DEAD/DEAH box helicase	NA	J9PUL8	Bacillus_phage	28.3	2.7e-11
WP_020063754.1|1821689_1824281_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
1823696:1823712	attL	ATAAATCTTTAACTTTA	NA	NA	NA	NA
WP_020063755.1|1824391_1826986_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_020063756.1|1827374_1829768_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_020063758.1|1831658_1832774_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_013114691.1|1833189_1833375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020063759.1|1833485_1833695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063761.1|1834414_1834963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063762.1|1834974_1835238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063763.1|1835238_1836066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063764.1|1836058_1836661_-	glycoside hydrolase family 19 protein	NA	F1C591	Cronobacter_phage	40.0	1.5e-30
WP_020063765.1|1836757_1837096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063766.1|1837169_1837559_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_020063767.1|1837562_1837757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063768.1|1837772_1839692_-	hypothetical protein	NA	NA	NA	NA	NA
1838424:1838440	attR	TAAAGTTAAAGATTTAT	NA	NA	NA	NA
WP_020063769.1|1839701_1840811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063770.1|1840922_1841375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063771.1|1841376_1842285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063772.1|1842281_1845737_-|tail	phage tail tape measure protein	tail	A0A1L6BY19	Clostridium_phage	41.2	6.8e-62
WP_028331270.1|1845741_1845930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028331271.1|1845995_1846361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063776.1|1848048_1848417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063777.1|1848413_1848884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020063778.1|1848885_1849227_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_020063779.1|1849223_1849610_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_020063780.1|1849621_1850905_-|capsid	phage major capsid protein	capsid	A0A142K632	Streptomyces_phage	34.1	1.2e-56
WP_020063781.1|1850918_1851560_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4J6Z9	uncultured_Caudovirales_phage	45.7	1.2e-28
>prophage 1
NZ_CP016085	Brachyspira hyodysenteriae ATCC 27164 strain B-78 plasmid pBhyoB78, complete sequence	32598	0	3883	32598		Escherichia_phage(33.33%)	5	NA	NA
WP_020065001.1|424_964_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	A0A1D8EQH2	Escherichia_phage	37.4	7.6e-21
WP_065203254.1|984_2088_-	radical SAM protein	NA	A0A1B1IVD8	uncultured_Mediterranean_phage	23.9	7.0e-13
WP_020064990.1|2106_2892_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_020064989.1|2901_3138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012672161.1|3139_3883_-	ParA family protein	NA	A0A1V0DZZ0	Clostridioides_phage	26.6	1.9e-09
>prophage 2
NZ_CP016085	Brachyspira hyodysenteriae ATCC 27164 strain B-78 plasmid pBhyoB78, complete sequence	32598	7877	8702	32598	integrase	Leptospira_phage(100.0%)	1	4600:4617	18318:18335
4600:4617	attL	TAAAATCATATTCTATTT	NA	NA	NA	NA
WP_144149998.1|7877_8702_-|integrase	tyrosine-type recombinase/integrase	integrase	S5VL15	Leptospira_phage	31.0	2.7e-17
WP_144149998.1|7877_8702_-|integrase	tyrosine-type recombinase/integrase	integrase	S5VL15	Leptospira_phage	31.0	2.7e-17
18318:18335	attR	TAAAATCATATTCTATTT	NA	NA	NA	NA
>prophage 3
NZ_CP016085	Brachyspira hyodysenteriae ATCC 27164 strain B-78 plasmid pBhyoB78, complete sequence	32598	11875	15286	32598		Escherichia_phage(50.0%)	4	NA	NA
WP_012672168.1|11875_12946_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	47.1	3.1e-82
WP_020065008.1|12959_13823_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.1	8.3e-102
WP_012672170.1|13841_14702_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.8	4.8e-33
WP_020065009.1|14707_15286_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	2.9e-42
>prophage 4
NZ_CP016085	Brachyspira hyodysenteriae ATCC 27164 strain B-78 plasmid pBhyoB78, complete sequence	32598	19200	21068	32598		Cafeteria_roenbergensis_virus(50.0%)	2	NA	NA
WP_020064996.1|19200_20151_-	NAD-dependent epimerase/dehydratase family protein	NA	E3T4Y8	Cafeteria_roenbergensis_virus	37.7	2.6e-40
WP_038369893.1|20147_21068_-	DUF616 domain-containing protein	NA	A0A2P0VMU2	Tetraselmis_virus	36.8	9.6e-32
>prophage 5
NZ_CP016085	Brachyspira hyodysenteriae ATCC 27164 strain B-78 plasmid pBhyoB78, complete sequence	32598	26649	27564	32598		Campylobacter_virus(100.0%)	1	NA	NA
WP_020065011.1|26649_27564_-	radical SAM protein	NA	D5GVS8	Campylobacter_virus	25.4	8.4e-12
>prophage 6
NZ_CP016085	Brachyspira hyodysenteriae ATCC 27164 strain B-78 plasmid pBhyoB78, complete sequence	32598	30583	31708	32598		Tupanvirus(100.0%)	1	NA	NA
WP_020065003.1|30583_31708_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A2K9L470	Tupanvirus	34.3	4.6e-36
