assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001676745.1_ASM167674v1	NZ_CP016171	Bordetella bronchialis strain AU17976, complete genome	1	1545629-1545720	1	CRISPRCasFinder	no	DinG	csa3,cas3,WYL,RT,DinG,DEDDh	Type IV-A	CAGCAGAACAACCAGAATCGGCAGCAGAACCAGCA	35	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,RT,DinG,DEDDh	NA,NA	NA|295aa|up_9|NZ_CP016171.1_1531229_1532114_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|288aa|up_8|NZ_CP016171.1_1532118_1532982_-	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein	NA|433aa|up_7|NZ_CP016171.1_1532953_1534252_-	pfam13379, NMT1_2, NMT1-like family	NA|193aa|up_6|NZ_CP016171.1_1534752_1535331_+	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	NA|486aa|up_5|NZ_CP016171.1_1535349_1536807_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|179aa|up_4|NZ_CP016171.1_1538094_1538631_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|322aa|up_3|NZ_CP016171.1_1538756_1539722_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|652aa|up_2|NZ_CP016171.1_1540314_1542270_+	pfam08774, VRR_NUC, VRR-NUC domain	DinG|768aa|up_1|NZ_CP016171.1_1542266_1544570_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|265aa|up_0|NZ_CP016171.1_1544616_1545411_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|661aa|down_0|NZ_CP016171.1_1545868_1547851_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|328aa|down_1|NZ_CP016171.1_1547890_1548874_-	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB	NA|297aa|down_2|NZ_CP016171.1_1549061_1549952_-	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|185aa|down_3|NZ_CP016171.1_1550026_1550581_-	pfam05974, DUF892, Domain of unknown function (DUF892)	NA|264aa|down_4|NZ_CP016171.1_1551005_1551797_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|590aa|down_5|NZ_CP016171.1_1551798_1553568_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|291aa|down_6|NZ_CP016171.1_1554650_1555523_-	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|66aa|down_7|NZ_CP016171.1_1555622_1555820_-	pfam12244, DUF3606, Protein of unknown function (DUF3606)	NA|762aa|down_8|NZ_CP016171.1_1555886_1558172_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|210aa|down_9|NZ_CP016171.1_1558236_1558866_-	cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily
GCF_001676745.1_ASM167674v1	NZ_CP016171	Bordetella bronchialis strain AU17976, complete genome	2	5416501-5416607	2	CRISPRCasFinder	no		csa3,cas3,WYL,RT,DinG,DEDDh	Orphan	ACGCAGGCACCATCAAAGGAACGGCATGA	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,RT,DinG,DEDDh	NA,NA	NA|328aa|up_9|NZ_CP016171.1_5405775_5406759_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|277aa|up_8|NZ_CP016171.1_5407028_5407859_+	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|238aa|up_7|NZ_CP016171.1_5407868_5408582_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|214aa|up_6|NZ_CP016171.1_5408581_5409223_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|267aa|up_5|NZ_CP016171.1_5409296_5410097_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|441aa|up_4|NZ_CP016171.1_5410083_5411406_+	cd03884, M20_bAS, M20 Peptidase beta-alanine synthase, an amidohydrolase	NA|234aa|up_3|NZ_CP016171.1_5411417_5412119_+	pfam09347, DUF1989, Domain of unknown function (DUF1989)	NA|201aa|up_2|NZ_CP016171.1_5412127_5412730_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|318aa|up_1|NZ_CP016171.1_5412732_5413686_+	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|416aa|up_0|NZ_CP016171.1_5414527_5415775_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|1261aa|down_0|NZ_CP016171.1_5416742_5420525_-	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|646aa|down_1|NZ_CP016171.1_5420928_5422866_+	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]	NA|305aa|down_2|NZ_CP016171.1_5423050_5423965_+	cd01144, BtuF, Cobalamin binding protein BtuF	NA|263aa|down_3|NZ_CP016171.1_5424087_5424876_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|270aa|down_4|NZ_CP016171.1_5424872_5425682_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|227aa|down_5|NZ_CP016171.1_5425739_5426420_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|162aa|down_6|NZ_CP016171.1_5426416_5426902_-	TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II	NA|518aa|down_7|NZ_CP016171.1_5428201_5429755_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|248aa|down_8|NZ_CP016171.1_5429758_5430502_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|340aa|down_9|NZ_CP016171.1_5430705_5431725_-	smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane
