The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013590	Rhizobium sp. N871 chromosome, complete genome	4476778	1089034	1102355	4476778	tail	EBPR_podovirus(33.33%)	13	NA	NA
WP_064824519.1|1089034_1090471_+	DNA packaging protein	NA	C8CLI4	Xylella_phage	62.6	1.7e-160
WP_064824521.1|1092574_1092811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064824522.1|1092845_1093826_+	hypothetical protein	NA	F8TUR8	EBPR_podovirus	36.0	7.8e-32
WP_064824523.1|1093850_1094846_+	DUF5309 domain-containing protein	NA	F8TUR9	EBPR_podovirus	72.8	3.6e-133
WP_064824524.1|1094858_1095296_+	hypothetical protein	NA	A0A218MMG4	uncultured_virus	38.7	1.7e-15
WP_167377180.1|1095350_1095524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064824525.1|1095520_1095841_+	hypothetical protein	NA	F8TUS1	EBPR_podovirus	53.8	5.0e-28
WP_064824526.1|1095840_1096431_+	hypothetical protein	NA	A0A088F6W5	Sulfitobacter_phage	45.1	2.9e-37
WP_064824527.1|1096427_1097045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064824528.1|1097035_1098634_+	hypothetical protein	NA	M4QM83	Sulfitobacter_phage	49.2	2.1e-135
WP_167377205.1|1098633_1099104_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_064824530.1|1099100_1100120_+|tail	tail fiber domain-containing protein	tail	M4NM77	Sulfitobacter_phage	51.7	1.1e-76
WP_064824531.1|1100120_1102355_+	hypothetical protein	NA	A0A0E3JI98	Rhodoferax_phage	37.0	3.1e-15
>prophage 2
NZ_CP013590	Rhizobium sp. N871 chromosome, complete genome	4476778	1921689	1928952	4476778	tRNA	uncultured_Mediterranean_phage(100.0%)	9	NA	NA
WP_064810187.1|1921689_1922703_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.1e-24
WP_064810188.1|1922721_1923579_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.2	5.6e-34
WP_064810189.1|1923575_1924280_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.4	9.6e-40
WP_011425113.1|1924462_1924654_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	6.8e-09
WP_064810190.1|1924705_1925320_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_064802115.1|1925316_1926144_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	5.2e-53
WP_064810191.1|1926240_1927524_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.2	1.1e-97
WP_064810192.1|1927528_1928302_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	1.4e-23
WP_064810193.1|1928298_1928952_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.7	6.8e-16
>prophage 3
NZ_CP013590	Rhizobium sp. N871 chromosome, complete genome	4476778	2213688	2222998	4476778	transposase,tRNA	uncultured_Mediterranean_phage(83.33%)	8	NA	NA
WP_064802585.1|2213688_2216478_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	3.9e-76
WP_064809302.1|2216613_2217984_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	38.3	1.7e-80
WP_003539654.1|2218372_2218528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064810391.1|2219062_2219575_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.2	5.3e-24
WP_064810392.1|2219601_2220174_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.7	1.3e-42
WP_064802591.1|2220202_2220712_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	9.3e-45
WP_064810393.1|2220784_2221867_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_064810394.1|2221867_2222998_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	52.9	3.1e-101
>prophage 4
NZ_CP013590	Rhizobium sp. N871 chromosome, complete genome	4476778	3137135	3146428	4476778		Rhizobium_phage(16.67%)	10	NA	NA
WP_064824585.1|3137135_3138188_-	non-homologous end-joining DNA ligase	NA	A0A068CDF3	Rhizobium_phage	68.1	6.7e-138
WP_064824587.1|3138873_3139626_+	SOS response-associated peptidase family protein	NA	A0A291AUP1	Sinorhizobium_phage	39.7	3.9e-39
WP_064824588.1|3139630_3139855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064824589.1|3139851_3140226_+	thermonuclease family protein	NA	G8DH70	Emiliania_huxleyi_virus	46.2	6.9e-21
WP_064824604.1|3140229_3140535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064815511.1|3140690_3140969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064824590.1|3141031_3142891_-	AAA family ATPase	NA	R4TQL5	Phaeocystis_globosa_virus	28.3	1.5e-23
WP_064824591.1|3143098_3143434_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_064824592.1|3143888_3144428_-	ATP-dependent DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	44.5	7.9e-26
WP_064810888.1|3144427_3146428_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.4	1.4e-88
>prophage 5
NZ_CP013590	Rhizobium sp. N871 chromosome, complete genome	4476778	4041598	4051926	4476778		Mycobacterium_phage(28.57%)	9	NA	NA
WP_064811420.1|4041598_4042309_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	47.3	3.3e-48
WP_064805162.1|4042308_4042665_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_064811421.1|4042661_4043390_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	37.8	1.8e-41
WP_064811422.1|4043498_4044722_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	30.3	1.1e-14
WP_064811423.1|4044825_4045800_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	74.8	2.8e-138
WP_064811424.1|4045993_4048162_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	52.1	1.7e-212
WP_064811425.1|4048140_4048554_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_064811426.1|4048567_4048789_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	6.7e-16
WP_064811772.1|4049688_4051926_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.8	6.8e-124
>prophage 1
NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	433056	243000	279543	433056	plate,transposase	Porcine_endogenous_retrovirus(100.0%)	18	NA	NA
WP_064812000.1|243000_244227_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_008536039.1|244190_246077_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004680427.1|246076_246580_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_004680426.1|246666_247200_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004680425.1|247315_248803_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_016737476.1|248805_249360_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004680423.1|249395_250388_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_064824610.1|252086_254366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016737477.1|256922_258278_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_008536064.1|258339_259506_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_008536065.1|259505_260795_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_012489525.1|260804_264410_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_012489526.1|264706_266323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170960111.1|266493_266661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012489527.1|268002_269013_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_064812001.1|272031_272919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011053406.1|276667_277834_+|transposase	IS110-like element ISRel9 family transposase	transposase	NA	NA	NA	NA
WP_064810414.1|278169_279543_-|transposase	ISNCY-like element ISRel26 family transposase	transposase	A1YTJ2	Porcine_endogenous_retrovirus	26.8	1.4e-05
