The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013547	Rhizobium phaseoli strain R611 chromosome, complete genome	4534235	1592110	1601311	4534235		Enterobacteria_phage(28.57%)	9	NA	NA
WP_064829924.1|1592110_1593409_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	50.9	9.2e-97
WP_003547190.1|1593418_1593895_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_012483355.1|1593898_1595266_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.6	6.8e-34
WP_012483356.1|1595265_1595877_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.6	2.0e-17
WP_012483357.1|1595928_1596798_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	59.0	1.2e-95
WP_012483358.1|1596807_1597695_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_064825071.1|1597698_1598754_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.5	4.1e-95
WP_012483360.1|1598760_1599339_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	48.1	8.1e-37
WP_064825072.1|1599328_1601311_-	hypothetical protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	36.4	8.8e-06
>prophage 2
NZ_CP013547	Rhizobium phaseoli strain R611 chromosome, complete genome	4534235	1926320	1939423	4534235	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_041683873.1|1926320_1927334_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	41.9	6.2e-24
WP_029531141.1|1927352_1928210_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	3.6e-33
WP_012483599.1|1928206_1928911_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	48.2	3.3e-40
WP_012483600.1|1929098_1929290_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	70.5	8.9e-09
WP_012483601.1|1929341_1929968_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_012483602.1|1929964_1930792_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	1.2e-52
WP_012483603.1|1930888_1932172_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.8	9.7e-99
WP_004678859.1|1932176_1932950_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	1.8e-23
WP_010025231.1|1932946_1933600_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.7	5.2e-16
WP_016732897.1|1933739_1935329_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	30.0	5.0e-12
WP_064825178.1|1935414_1936287_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_004678848.1|1936490_1936838_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	4.1e-12
WP_064825179.1|1936882_1939423_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	50.2	4.3e-58
>prophage 3
NZ_CP013547	Rhizobium phaseoli strain R611 chromosome, complete genome	4534235	2003988	2039720	4534235	transposase,protease,lysis,integrase	Rhizobium_phage(25.0%)	39	2001241:2001258	2031876:2031893
2001241:2001258	attL	GCTGCCGATGCGATCGCC	NA	NA	NA	NA
WP_012483661.1|2003988_2004342_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.1	1.7e-13
WP_012483662.1|2004352_2006842_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.3e-171
WP_012483663.1|2006920_2007346_-	HIT family protein	NA	NA	NA	NA	NA
WP_012483664.1|2007400_2008591_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_016732944.1|2008668_2009388_-	glycerophosphodiester phosphodiesterase	NA	A0A1J0F961	Only_Syngen_Nebraska_virus	27.5	6.0e-13
WP_004678601.1|2009384_2009855_-	RidA family protein	NA	NA	NA	NA	NA
WP_064829934.1|2010117_2011395_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A077KET4	Ralstonia_phage	31.1	6.4e-42
WP_064829935.1|2011391_2011790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064829936.1|2011928_2012204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150128083.1|2012522_2015156_-	DUF3987 domain-containing protein	NA	L7TRH0	Rhizobium_phage	28.4	2.4e-19
WP_064829939.1|2015831_2016116_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_064829940.1|2016127_2016709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064829941.1|2016844_2017315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064829942.1|2017358_2018024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029875829.1|2018098_2018509_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_008536947.1|2018505_2018853_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	64.5	5.2e-39
WP_029875830.1|2018898_2020533_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	45.8	2.5e-99
WP_064829943.1|2020943_2021237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064829944.1|2021243_2022725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064829945.1|2022910_2023705_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_064829946.1|2023713_2024760_-	non-homologous end-joining DNA ligase	NA	A0A068CDF3	Rhizobium_phage	68.5	5.8e-134
WP_185185221.1|2024910_2025189_+	hypothetical protein	NA	B4UTS3	Rhizobium_phage	63.6	7.6e-25
WP_064829947.1|2025323_2025707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064829948.1|2025706_2026081_+	thermonuclease family protein	NA	G8DH70	Emiliania_huxleyi_virus	47.9	1.9e-23
WP_064829949.1|2026181_2026499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064829950.1|2026533_2027193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150128084.1|2027185_2027641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004678603.1|2027905_2028742_+	cell envelope integrity EipB family protein	NA	NA	NA	NA	NA
WP_012483666.1|2028941_2030018_+	toxic anion resistance protein	NA	H6X3X9	Enterobacteria_phage	23.5	2.2e-11
WP_041683875.1|2030032_2031601_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012483668.1|2031608_2032226_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
2031876:2031893	attR	GCTGCCGATGCGATCGCC	NA	NA	NA	NA
WP_012483669.1|2032225_2033332_+	solute-binding protein	NA	NA	NA	NA	NA
WP_008526906.1|2033563_2034331_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_009994369.1|2034570_2035497_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_004678616.1|2035593_2036316_+	UMP kinase	NA	NA	NA	NA	NA
WP_004678618.1|2036386_2036947_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_012483670.1|2036984_2037728_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.7	4.0e-20
WP_012483671.1|2037727_2038558_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_064825197.1|2038595_2039720_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 4
NZ_CP013547	Rhizobium phaseoli strain R611 chromosome, complete genome	4534235	2192771	2203034	4534235		uncultured_Mediterranean_phage(83.33%)	9	NA	NA
WP_012483791.1|2192771_2195693_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.2	0.0e+00
WP_004671899.1|2195975_2196491_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	72.9	1.2e-44
WP_004671901.1|2196592_2197240_-	MarC family protein	NA	NA	NA	NA	NA
WP_029531195.1|2197477_2200300_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.6	8.8e-76
WP_003539654.1|2200701_2200857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064825256.1|2200999_2201278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064825257.1|2201368_2201863_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.8	3.6e-25
WP_012483798.1|2201921_2202494_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.2	5.7e-43
WP_004671916.1|2202524_2203034_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	1.2e-44
>prophage 5
NZ_CP013547	Rhizobium phaseoli strain R611 chromosome, complete genome	4534235	3998861	4008980	4534235		Mycobacterium_phage(28.57%)	9	NA	NA
WP_012485329.1|3998861_3999572_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	48.7	2.1e-50
WP_012485330.1|3999571_3999928_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_012485331.1|3999924_4000653_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.2	4.0e-41
WP_012485332.1|4000735_4001980_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	29.5	1.9e-14
WP_064825673.1|4002081_4003056_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	74.4	4.7e-138
WP_041683783.1|4003235_4005440_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	51.8	3.9e-212
WP_012485335.1|4005418_4005823_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_010068756.1|4005839_4006061_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	1.8e-16
WP_012485336.1|4006736_4008980_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	37.2	5.1e-127
>prophage 1
NZ_CP013550	Rhizobium phaseoli strain R611 plasmid pRetR611c, complete sequence	414080	227229	275628	414080	transposase,plate	Lactococcus_phage(50.0%)	21	NA	NA
WP_008536038.1|227229_228456_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_064830110.1|228419_230306_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004680427.1|230305_230809_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_004680426.1|230895_231429_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004680425.1|231544_233032_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_016737476.1|233034_233589_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004680423.1|233624_234617_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_064820044.1|236315_238595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016737477.1|241151_242507_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_016737478.1|242568_243735_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_008536065.1|243734_245024_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_012489525.1|245033_248639_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_012489526.1|248935_250552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170960111.1|250722_250890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012489527.1|252231_253242_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008536079.1|256260_257148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818141.1|258508_259243_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	36.0	5.9e-32
WP_077994580.1|259242_260742_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	24.6	2.6e-10
WP_064832933.1|264357_267453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064832934.1|268527_271617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064820024.1|274206_275628_-|transposase	ISNCY-like element ISRel10 family transposase	transposase	NA	NA	NA	NA
