The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013500	Rhizobium esperanzae strain N561 chromosome, complete genome	4476427	1088914	1102235	4476427	tail	EBPR_podovirus(33.33%)	13	NA	NA
WP_064824519.1|1088914_1090351_+	DNA packaging protein	NA	C8CLI4	Xylella_phage	62.6	1.7e-160
WP_064824521.1|1092454_1092691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064824522.1|1092725_1093706_+	hypothetical protein	NA	F8TUR8	EBPR_podovirus	36.0	7.8e-32
WP_064824523.1|1093730_1094726_+	DUF5309 domain-containing protein	NA	F8TUR9	EBPR_podovirus	72.8	3.6e-133
WP_064824524.1|1094738_1095176_+	hypothetical protein	NA	A0A218MMG4	uncultured_virus	38.7	1.7e-15
WP_167377180.1|1095230_1095404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064824525.1|1095400_1095721_+	hypothetical protein	NA	F8TUS1	EBPR_podovirus	53.8	5.0e-28
WP_064824526.1|1095720_1096311_+	hypothetical protein	NA	A0A088F6W5	Sulfitobacter_phage	45.1	2.9e-37
WP_064824527.1|1096307_1096925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064824528.1|1096915_1098514_+	hypothetical protein	NA	M4QM83	Sulfitobacter_phage	49.2	2.1e-135
WP_167377205.1|1098513_1098984_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_064824530.1|1098980_1100000_+|tail	tail fiber domain-containing protein	tail	M4NM77	Sulfitobacter_phage	51.7	1.1e-76
WP_064824531.1|1100000_1102235_+	hypothetical protein	NA	A0A0E3JI98	Rhodoferax_phage	37.0	3.1e-15
>prophage 2
NZ_CP013500	Rhizobium esperanzae strain N561 chromosome, complete genome	4476427	1921566	1928829	4476427	tRNA	uncultured_Mediterranean_phage(100.0%)	9	NA	NA
WP_064810187.1|1921566_1922580_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.1e-24
WP_064810188.1|1922598_1923456_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.2	5.6e-34
WP_064810189.1|1923452_1924157_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.4	9.6e-40
WP_011425113.1|1924339_1924531_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	6.8e-09
WP_064810190.1|1924582_1925197_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_064802115.1|1925193_1926021_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	5.2e-53
WP_064810191.1|1926117_1927401_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.2	1.1e-97
WP_064810192.1|1927405_1928179_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	1.4e-23
WP_064810193.1|1928175_1928829_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.7	6.8e-16
>prophage 3
NZ_CP013500	Rhizobium esperanzae strain N561 chromosome, complete genome	4476427	2213565	2222875	4476427	transposase,tRNA	uncultured_Mediterranean_phage(83.33%)	8	NA	NA
WP_064802585.1|2213565_2216355_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	3.9e-76
WP_064809302.1|2216490_2217861_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	38.3	1.7e-80
WP_003539654.1|2218249_2218405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064810391.1|2218939_2219452_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.2	5.3e-24
WP_064810392.1|2219478_2220051_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.7	1.3e-42
WP_064802591.1|2220079_2220589_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	9.3e-45
WP_064810393.1|2220661_2221744_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_064810394.1|2221744_2222875_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	52.9	3.1e-101
>prophage 4
NZ_CP013500	Rhizobium esperanzae strain N561 chromosome, complete genome	4476427	3136940	3146233	4476427		Rhizobium_phage(16.67%)	10	NA	NA
WP_064824585.1|3136940_3137993_-	ATP-dependent DNA ligase	NA	A0A068CDF3	Rhizobium_phage	68.1	6.7e-138
WP_064824587.1|3138678_3139431_+	SOS response-associated peptidase family protein	NA	A0A291AUP1	Sinorhizobium_phage	39.7	3.9e-39
WP_064824588.1|3139435_3139660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064824589.1|3139656_3140031_+	thermonuclease family protein	NA	G8DH70	Emiliania_huxleyi_virus	46.2	6.9e-21
WP_064824604.1|3140034_3140340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064815511.1|3140495_3140774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064824590.1|3140836_3142696_-	AAA family ATPase	NA	R4TQL5	Phaeocystis_globosa_virus	28.3	1.5e-23
WP_064824591.1|3142903_3143239_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_064824592.1|3143693_3144233_-	ATP-dependent DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	44.5	7.9e-26
WP_064810888.1|3144232_3146233_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.4	1.4e-88
>prophage 5
NZ_CP013500	Rhizobium esperanzae strain N561 chromosome, complete genome	4476427	4041325	4051653	4476427		Mycobacterium_phage(28.57%)	9	NA	NA
WP_064811420.1|4041325_4042036_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	47.3	3.3e-48
WP_064805162.1|4042035_4042392_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_064811421.1|4042388_4043117_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	37.8	1.8e-41
WP_064811422.1|4043225_4044449_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	30.3	1.1e-14
WP_064811423.1|4044552_4045527_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	74.8	2.8e-138
WP_064811424.1|4045720_4047889_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	52.1	1.7e-212
WP_064811425.1|4047867_4048281_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_064811426.1|4048294_4048516_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	6.7e-16
WP_064811772.1|4049415_4051653_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.8	6.8e-124
>prophage 1
NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	433056	243000	279543	433056	plate,transposase	Porcine_endogenous_retrovirus(100.0%)	19	NA	NA
WP_064812000.1|243000_244227_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_008536039.1|244190_246077_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004680427.1|246076_246580_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_004680426.1|246666_247200_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004680425.1|247315_248803_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_016737476.1|248805_249360_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004680423.1|249395_250388_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_064824610.1|252086_254366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016737477.1|256922_258278_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_008536064.1|258339_259506_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_008536065.1|259505_260795_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_012489525.1|260804_264410_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_004678816.1|264495_264684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012489526.1|264706_266323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008536071.1|266418_266661_+	SIR2 family protein	NA	NA	NA	NA	NA
WP_012489527.1|268002_269013_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_064812001.1|272031_272919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011053406.1|276667_277834_+|transposase	IS110-like element ISRel9 family transposase	transposase	NA	NA	NA	NA
WP_064810414.1|278169_279543_-|transposase	ISNCY-like element ISRel26 family transposase	transposase	A1YTJ2	Porcine_endogenous_retrovirus	26.8	1.4e-05
