assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001663815.1_ASM166381v1	NZ_CP016027	Halothiobacillus sp. LS2, complete genome	1	896268-896871	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2	WYL,DEDDh,csa3,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	Type III-A,Type III-B,Type III-D,Type III-C	GTCTTAATCCCTTTAAGCAGGGAGGGTCGGTTCGGAC,GTCTTAATCCCTTTAAGCAGGGAGGGTCGGTTCGGAC,GTCTTAATCCCTTTAAGCAGGGAGGGTCGGTTCGGAC	37,37,37	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	WYL,DEDDh,csa3,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	NA|127aa|up_5|NZ_CP016027.1_890225_890606_+,NA|272aa|up_0|NZ_CP016027.1_894522_895338_-,NA|109aa|down_0|NZ_CP016027.1_897534_897861_+,NA|307aa|down_2|NZ_CP016027.1_899453_900374_+,NA|364aa|down_4|NZ_CP016027.1_901001_902093_+,NA|110aa|down_5|NZ_CP016027.1_902209_902539_+,NA|90aa|down_6|NZ_CP016027.1_902683_902953_+	NA|248aa|up_9|NZ_CP016027.1_884355_885099_-	PRK09136, PRK09136, S-methyl-5'-thioinosine phosphorylase	NA|196aa|up_8|NZ_CP016027.1_885111_885699_-	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional	NA|358aa|up_7|NZ_CP016027.1_885712_886786_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|755aa|up_6|NZ_CP016027.1_887476_889741_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|127aa|up_5|NZ_CP016027.1_890225_890606_+	NA	NA|126aa|up_4|NZ_CP016027.1_890687_891065_+	pfam08960, DUF1874, Domain of unknown function (DUF1874)	csx1|376aa|up_3|NZ_CP016027.1_891061_892189_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|407aa|up_2|NZ_CP016027.1_892204_893425_+	TIGR02221, CRISPR-associated_protein_Csx1_2, CRISPR-associated protein, TM1812 family	NA|118aa|up_1|NZ_CP016027.1_893577_893931_+	pfam13744, HTH_37, Helix-turn-helix domain	NA|272aa|up_0|NZ_CP016027.1_894522_895338_-	NA	NA|109aa|down_0|NZ_CP016027.1_897534_897861_+	NA	NA|500aa|down_1|NZ_CP016027.1_897891_899391_+	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|307aa|down_2|NZ_CP016027.1_899453_900374_+	NA	NA|205aa|down_3|NZ_CP016027.1_900370_900985_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|364aa|down_4|NZ_CP016027.1_901001_902093_+	NA	NA|110aa|down_5|NZ_CP016027.1_902209_902539_+	NA	NA|90aa|down_6|NZ_CP016027.1_902683_902953_+	NA	cmr6gr7|404aa|down_7|NZ_CP016027.1_903699_904911_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|133aa|down_8|NZ_CP016027.1_904907_905306_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|293aa|down_9|NZ_CP016027.1_905309_906188_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4
GCF_001663815.1_ASM166381v1	NZ_CP016027	Halothiobacillus sp. LS2, complete genome	2	903094-903483	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2	WYL,DEDDh,csa3,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	Type III-A,Type III-B,Type III-D,Type III-C	GTCTTAATCCCTTTAAGCAGGGAGGGTCGGTTCGGAC,GTCTTAATCCCTTTAAGCAGGGAGGGTCGGTTCGGAC,GTCTTAATCCCTTTAAGCAGGGAGGGTCGGTTCGGAC	37,37,37	0	0	NA	NA	NA:NA:NA	5,5,5	5	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	WYL,DEDDh,csa3,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	NA|272aa|up_7|NZ_CP016027.1_894522_895338_-,NA|109aa|up_6|NZ_CP016027.1_897534_897861_+,NA|307aa|up_4|NZ_CP016027.1_899453_900374_+,NA|364aa|up_2|NZ_CP016027.1_901001_902093_+,NA|110aa|up_1|NZ_CP016027.1_902209_902539_+,NA|90aa|up_0|NZ_CP016027.1_902683_902953_+,NA|60aa|down_7|NZ_CP016027.1_911558_911738_-	csx1|407aa|up_9|NZ_CP016027.1_892204_893425_+	TIGR02221, CRISPR-associated_protein_Csx1_2, CRISPR-associated protein, TM1812 family	NA|118aa|up_8|NZ_CP016027.1_893577_893931_+	pfam13744, HTH_37, Helix-turn-helix domain	NA|272aa|up_7|NZ_CP016027.1_894522_895338_-	NA	NA|109aa|up_6|NZ_CP016027.1_897534_897861_+	NA	NA|500aa|up_5|NZ_CP016027.1_897891_899391_+	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|307aa|up_4|NZ_CP016027.1_899453_900374_+	NA	NA|205aa|up_3|NZ_CP016027.1_900370_900985_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|364aa|up_2|NZ_CP016027.1_901001_902093_+	NA	NA|110aa|up_1|NZ_CP016027.1_902209_902539_+	NA	NA|90aa|up_0|NZ_CP016027.1_902683_902953_+	NA	cmr6gr7|404aa|down_0|NZ_CP016027.1_903699_904911_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|133aa|down_1|NZ_CP016027.1_904907_905306_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|293aa|down_2|NZ_CP016027.1_905309_906188_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|438aa|down_3|NZ_CP016027.1_906229_907543_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|636aa|down_4|NZ_CP016027.1_907542_909450_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr1gr7|360aa|down_5|NZ_CP016027.1_909446_910526_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|334aa|down_6|NZ_CP016027.1_910560_911562_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|60aa|down_7|NZ_CP016027.1_911558_911738_-	NA	cas1|370aa|down_8|NZ_CP016027.1_911812_912922_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|138aa|down_9|NZ_CP016027.1_912809_913223_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2
GCF_001663815.1_ASM166381v1	NZ_CP016027	Halothiobacillus sp. LS2, complete genome	3	913819-913995	3,3	PILER-CR,CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2	WYL,DEDDh,csa3,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	Type III-A,Type III-B,Type III-D,Type III-C	GTCTTAATCCCTTTAAGCAGGGAGGGTCGGTTCGGAC,GTCCGAACCGACCCTCCCTGCTTAAAGGGATTAAGAC	37,37	0	0	NA	NA	NA:NA	2,2	2	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	WYL,DEDDh,csa3,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	NA|60aa|up_3|NZ_CP016027.1_911558_911738_-,NA	cmr5gr11|133aa|up_9|NZ_CP016027.1_904907_905306_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|293aa|up_8|NZ_CP016027.1_905309_906188_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|438aa|up_7|NZ_CP016027.1_906229_907543_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|636aa|up_6|NZ_CP016027.1_907542_909450_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr1gr7|360aa|up_5|NZ_CP016027.1_909446_910526_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|334aa|up_4|NZ_CP016027.1_910560_911562_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|60aa|up_3|NZ_CP016027.1_911558_911738_-	NA	cas1|370aa|up_2|NZ_CP016027.1_911812_912922_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|138aa|up_1|NZ_CP016027.1_912809_913223_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas2|95aa|up_0|NZ_CP016027.1_913219_913504_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|123aa|down_0|NZ_CP016027.1_914600_914969_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|492aa|down_1|NZ_CP016027.1_915472_916948_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|383aa|down_2|NZ_CP016027.1_916985_918133_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|338aa|down_3|NZ_CP016027.1_919141_920155_+	PRK09283, PRK09283, porphobilinogen synthase	NA|548aa|down_4|NZ_CP016027.1_920270_921914_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|548aa|down_5|NZ_CP016027.1_922281_923925_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|156aa|down_6|NZ_CP016027.1_924200_924668_-	pfam01322, Cytochrom_C_2, Cytochrome C'	NA|210aa|down_7|NZ_CP016027.1_924885_925515_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|293aa|down_8|NZ_CP016027.1_925500_926379_-	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|184aa|down_9|NZ_CP016027.1_926466_927018_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E
GCF_001663815.1_ASM166381v1	NZ_CP016027	Halothiobacillus sp. LS2, complete genome	4	1845697-1847067	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,DEDDh,csa3,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	Type I-E	CGGTTCATCCCCGCGCCTGCGGGGAACGG,CGGTTCATCCCCGCGCCTGCGGGGAACGG,CGGTTCATCCCCGCGCCTGCGGGGAACGG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,22,22	22	TypeI-E	WYL,DEDDh,csa3,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,cas1,cas2,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	NA|250aa|up_6|NZ_CP016027.1_1836827_1837577_-,NA|763aa|up_1|NZ_CP016027.1_1841821_1844110_+,NA|368aa|up_0|NZ_CP016027.1_1844125_1845229_+,NA|92aa|down_3|NZ_CP016027.1_1848607_1848883_-	NA|219aa|up_9|NZ_CP016027.1_1834624_1835281_+	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|306aa|up_8|NZ_CP016027.1_1835277_1836195_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|125aa|up_7|NZ_CP016027.1_1836381_1836756_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|250aa|up_6|NZ_CP016027.1_1836827_1837577_-	NA	NA|276aa|up_5|NZ_CP016027.1_1837666_1838494_-	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism]	NA|109aa|up_4|NZ_CP016027.1_1838497_1838824_-	pfam13473, Cupredoxin_1, Cupredoxin-like domain	NA|161aa|up_3|NZ_CP016027.1_1839101_1839584_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|628aa|up_2|NZ_CP016027.1_1839652_1841536_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|763aa|up_1|NZ_CP016027.1_1841821_1844110_+	NA	NA|368aa|up_0|NZ_CP016027.1_1844125_1845229_+	NA	cas2|100aa|down_0|NZ_CP016027.1_1847117_1847417_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|304aa|down_1|NZ_CP016027.1_1847397_1848309_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|86aa|down_2|NZ_CP016027.1_1848317_1848575_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|92aa|down_3|NZ_CP016027.1_1848607_1848883_-	NA	cas6e|231aa|down_4|NZ_CP016027.1_1848996_1849689_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|228aa|down_5|NZ_CP016027.1_1849675_1850359_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|388aa|down_6|NZ_CP016027.1_1850362_1851526_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|171aa|down_7|NZ_CP016027.1_1851522_1852035_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|515aa|down_8|NZ_CP016027.1_1852031_1853576_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|882aa|down_9|NZ_CP016027.1_1853572_1856218_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3
