assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001663195.1_ASM166319v1	NZ_CP015990	Klebsiella pneumoniae strain BR chromosome, complete genome	1	2943957-2944664	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	cas3,WYL,RT,csa3,DEDDh,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	AGAAACACCCCCACGTGCGTGGGGAAGAC,AGAAACACCCCCACGTGCGTGGGGAAGACN,GAAACACCCCCACGTGCGTGGGGAAGAC	29,30,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	11,11,10	11	TypeI-E	cas3,WYL,RT,csa3,DEDDh,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|77aa|up_9|NZ_CP015990.1_2934707_2934938_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP015990.1_2934934_2935672_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP015990.1_2935721_2936381_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP015990.1_2936377_2937001_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|447aa|up_5|NZ_CP015990.1_2937084_2938425_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP015990.1_2938435_2940220_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|252aa|up_3|NZ_CP015990.1_2940222_2940978_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP015990.1_2941479_2941851_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP015990.1_2941911_2942595_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP015990.1_2942605_2943721_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|down_0|NZ_CP015990.1_2944711_2944999_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP015990.1_2944976_2945852_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|down_2|NZ_CP015990.1_2945851_2946568_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP015990.1_2946580_2947615_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP015990.1_2947644_2948292_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP015990.1_2948284_2948851_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP015990.1_2948862_2950386_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NZ_CP015990.1_2950389_2953005_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NZ_CP015990.1_2954247_2955318_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NZ_CP015990.1_2955310_2957080_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_001663195.1_ASM166319v1	NZ_CP015990	Klebsiella pneumoniae strain BR chromosome, complete genome	2	2953417-2953995	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	cas3,WYL,RT,csa3,DEDDh,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	AGAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC	29,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	9,9,6	9	TypeI-E	cas3,WYL,RT,csa3,DEDDh,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|228aa|up_9|NZ_CP015990.1_2941911_2942595_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NZ_CP015990.1_2942605_2943721_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|up_7|NZ_CP015990.1_2944711_2944999_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NZ_CP015990.1_2944976_2945852_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|up_5|NZ_CP015990.1_2945851_2946568_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_4|NZ_CP015990.1_2946580_2947615_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NZ_CP015990.1_2947644_2948292_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NZ_CP015990.1_2948284_2948851_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NZ_CP015990.1_2948862_2950386_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_0|NZ_CP015990.1_2950389_2953005_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NZ_CP015990.1_2954247_2955318_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP015990.1_2955310_2957080_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP015990.1_2957153_2958242_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|360aa|down_3|NZ_CP015990.1_2958544_2959624_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_4|NZ_CP015990.1_2959870_2962021_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|54aa|down_5|NZ_CP015990.1_2962063_2962225_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_6|NZ_CP015990.1_2963516_2964716_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_7|NZ_CP015990.1_2964831_2965266_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_8|NZ_CP015990.1_2965831_2967064_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|131aa|down_9|NZ_CP015990.1_2967100_2967493_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_001663195.1_ASM166319v1	NZ_CP015990	Klebsiella pneumoniae strain BR chromosome, complete genome	3	4333469-4333597	3	CRISPRCasFinder	no	DEDDh	cas3,WYL,RT,csa3,DEDDh,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Unclear	TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|428aa|up_9|NZ_CP015990.1_4323217_4324501_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP015990.1_4324636_4326037_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP015990.1_4326082_4326775_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP015990.1_4326860_4327259_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP015990.1_4327316_4328561_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP015990.1_4328666_4329125_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP015990.1_4329382_4330840_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP015990.1_4330882_4331335_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP015990.1_4331337_4332393_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP015990.1_4332552_4333413_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP015990.1_4333635_4333851_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP015990.1_4333853_4335077_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP015990.1_4335089_4335686_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP015990.1_4335692_4336331_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP015990.1_4336323_4337118_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP015990.1_4337110_4338349_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP015990.1_4338352_4339696_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP015990.1_4340107_4340848_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP015990.1_4340818_4341586_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP015990.1_4341660_4342242_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
