assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001654435.1_ASM165443v1	NZ_CP015878	Pseudomonas citronellolis strain SJTE-3 chromosome, complete genome	1	204033-204843	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f	PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	Type I-F	ATTTCTTAGCTGCCTACACGGCAGTGAAG,TTTCTTAGCTGCCTACACGGCAGTGAAG,TTTCTTAGCTGCCTACACGGCAGTGAAG	29,28,28	0	0	NA	NA	I-F:I-F:I-F	13,13,13	13	TypeI-F	PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	NA,NA|181aa|down_8|NZ_CP015878.1_217276_217819_+	NA|72aa|up_9|NZ_CP015878.1_190936_191152_-	pfam11278, DUF3079, Protein of unknown function (DUF3079)	NA|194aa|up_8|NZ_CP015878.1_191340_191922_+	pfam06821, Ser_hydrolase, Serine hydrolase	NA|515aa|up_7|NZ_CP015878.1_192258_193803_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|239aa|up_6|NZ_CP015878.1_193979_194696_-	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|354aa|up_5|NZ_CP015878.1_194943_196005_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|542aa|up_4|NZ_CP015878.1_196353_197979_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|838aa|up_3|NZ_CP015878.1_198244_200758_+	PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional	NA|89aa|up_2|NZ_CP015878.1_201028_201295_-	pfam09526, DUF2387, Probable metal-binding protein (DUF2387)	NA|682aa|up_1|NZ_CP015878.1_201294_203340_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|181aa|up_0|NZ_CP015878.1_203418_203961_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	cas6f|188aa|down_0|NZ_CP015878.1_204973_205537_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|343aa|down_1|NZ_CP015878.1_205540_206569_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|324aa|down_2|NZ_CP015878.1_206579_207551_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|430aa|down_3|NZ_CP015878.1_207537_208827_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|369aa|down_4|NZ_CP015878.1_209006_210113_+	COG3177, COG3177, Fic family protein [Function unknown]	cas3f|1077aa|down_5|NZ_CP015878.1_210252_213483_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|217aa|down_6|NZ_CP015878.1_214409_215060_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|665aa|down_7|NZ_CP015878.1_215272_217267_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|181aa|down_8|NZ_CP015878.1_217276_217819_+	NA	NA|127aa|down_9|NZ_CP015878.1_217844_218225_+	pfam09345, DUF1987, Domain of unknown function (DUF1987)
GCF_001654435.1_ASM165443v1	NZ_CP015878	Pseudomonas citronellolis strain SJTE-3 chromosome, complete genome	2	213808-214195	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f	PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	Type I-F	TTTCTTAGCTGCCTATACGGCAGTGAA,TAGCTGCCTATACGGCAGTGAAG,TTTCTTAGCTGCCTATACGGCAGTGAAG	27,23,28	0	0	NA	NA	I-F:I-F:I-F	6,6,5	6	TypeI-F	PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	NA,NA|181aa|down_2|NZ_CP015878.1_217276_217819_+	NA|838aa|up_9|NZ_CP015878.1_198244_200758_+	PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional	NA|89aa|up_8|NZ_CP015878.1_201028_201295_-	pfam09526, DUF2387, Probable metal-binding protein (DUF2387)	NA|682aa|up_7|NZ_CP015878.1_201294_203340_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|181aa|up_6|NZ_CP015878.1_203418_203961_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	cas6f|188aa|up_5|NZ_CP015878.1_204973_205537_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|343aa|up_4|NZ_CP015878.1_205540_206569_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|324aa|up_3|NZ_CP015878.1_206579_207551_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|430aa|up_2|NZ_CP015878.1_207537_208827_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|369aa|up_1|NZ_CP015878.1_209006_210113_+	COG3177, COG3177, Fic family protein [Function unknown]	cas3f|1077aa|up_0|NZ_CP015878.1_210252_213483_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|217aa|down_0|NZ_CP015878.1_214409_215060_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|665aa|down_1|NZ_CP015878.1_215272_217267_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|181aa|down_2|NZ_CP015878.1_217276_217819_+	NA	NA|127aa|down_3|NZ_CP015878.1_217844_218225_+	pfam09345, DUF1987, Domain of unknown function (DUF1987)	NA|266aa|down_4|NZ_CP015878.1_218229_219027_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|368aa|down_5|NZ_CP015878.1_219335_220439_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|459aa|down_6|NZ_CP015878.1_220803_222180_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|309aa|down_7|NZ_CP015878.1_222511_223438_+	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein	NA|313aa|down_8|NZ_CP015878.1_223658_224597_+	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein	NA|280aa|down_9|NZ_CP015878.1_224638_225478_+	TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease protein
GCF_001654435.1_ASM165443v1	NZ_CP015878	Pseudomonas citronellolis strain SJTE-3 chromosome, complete genome	3	664854-664986	3	CRISPRCasFinder	no		PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	Orphan	GATGGGTATCGCTGCGCTCAACGCCATCCTACGAGGGTG	39	0	0	NA	NA	NA	1	1	Orphan	PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	NA,NA|351aa|down_4|NZ_CP015878.1_669995_671048_-,NA|351aa|down_5|NZ_CP015878.1_671065_672118_-,NA|303aa|down_6|NZ_CP015878.1_672139_673048_-,NA|1273aa|down_7|NZ_CP015878.1_673197_677016_-	NA|208aa|up_9|NZ_CP015878.1_655276_655900_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|up_8|NZ_CP015878.1_655901_656684_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|92aa|up_7|NZ_CP015878.1_656814_657090_+	pfam09650, PHA_gran_rgn, Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)	NA|141aa|up_6|NZ_CP015878.1_657219_657642_+	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin)	NA|292aa|up_5|NZ_CP015878.1_657652_658528_+	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin)	NA|205aa|up_4|NZ_CP015878.1_658578_659193_-	pfam13972, TetR, Bacterial transcriptional repressor	NA|561aa|up_3|NZ_CP015878.1_659469_661152_-	TIGR01839, Poly3-hydroxyalkanoate_polymerase_1, poly(R)-hydroxyalkanoic acid synthase, class II	NA|288aa|up_2|NZ_CP015878.1_661330_662194_-	TIGR02240, Poly3-hydroxyalkanoate_depolymerase, poly(3-hydroxyalkanoate) depolymerase	NA|560aa|up_1|NZ_CP015878.1_662337_664017_-	TIGR01839, Poly3-hydroxyalkanoate_polymerase_1, poly(R)-hydroxyalkanoic acid synthase, class II	NA|124aa|up_0|NZ_CP015878.1_664413_664785_-	COG3536, COG3536, Uncharacterized protein conserved in bacteria [Function unknown]	NA|447aa|down_0|NZ_CP015878.1_665044_666385_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|179aa|down_1|NZ_CP015878.1_666414_666951_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|264aa|down_2|NZ_CP015878.1_667106_667898_-	COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]	NA|580aa|down_3|NZ_CP015878.1_667904_669644_-	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|351aa|down_4|NZ_CP015878.1_669995_671048_-	NA	NA|351aa|down_5|NZ_CP015878.1_671065_672118_-	NA	NA|303aa|down_6|NZ_CP015878.1_672139_673048_-	NA	NA|1273aa|down_7|NZ_CP015878.1_673197_677016_-	NA	NA|262aa|down_8|NZ_CP015878.1_677012_677798_-	pfam13503, DUF4123, Domain of unknown function (DUF4123)	NA|695aa|down_9|NZ_CP015878.1_677794_679879_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein
GCF_001654435.1_ASM165443v1	NZ_CP015878	Pseudomonas citronellolis strain SJTE-3 chromosome, complete genome	4	5405367-5405558	4	CRISPRCasFinder	no		PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	Orphan	CGGGTAGACGGTGGTGATATCGCC	24	0	0	NA	NA	NA	2	2	Orphan	PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	NA|68aa|up_8|NZ_CP015878.1_5395984_5396188_-,NA|67aa|down_2|NZ_CP015878.1_5407266_5407467_-,NA|177aa|down_4|NZ_CP015878.1_5408076_5408607_-,NA|219aa|down_5|NZ_CP015878.1_5408610_5409267_-,NA|107aa|down_6|NZ_CP015878.1_5409263_5409584_-,NA|84aa|down_7|NZ_CP015878.1_5409586_5409838_-	NA|165aa|up_9|NZ_CP015878.1_5395430_5395925_-	cd00736, lambda_lys-like, Bacteriophage lambda lysozyme and similar proteins	NA|68aa|up_8|NZ_CP015878.1_5395984_5396188_-	NA	NA|350aa|up_7|NZ_CP015878.1_5396246_5397296_-	PHA02561, D, tail protein; Provisional	NA|69aa|up_6|NZ_CP015878.1_5397318_5397525_-	COG5004, COG5004, P2-like prophage tail protein X [General function prediction only]	NA|282aa|up_5|NZ_CP015878.1_5397499_5398345_-	COG3499, COG3499, Phage protein U [General function prediction only]	NA|775aa|up_4|NZ_CP015878.1_5398359_5400684_-	COG3941, COG3941, Mu-like prophage protein [General function prediction only]	NA|107aa|up_3|NZ_CP015878.1_5400822_5401143_-	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|168aa|up_2|NZ_CP015878.1_5401154_5401658_-	COG3498, COG3498, Phage tail tube protein FII [General function prediction only]	NA|386aa|up_1|NZ_CP015878.1_5401670_5402828_-	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only]	NA|804aa|up_0|NZ_CP015878.1_5402940_5405352_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|297aa|down_0|NZ_CP015878.1_5406048_5406939_-	PHA02568, J, baseplate assembly protein; Provisional	NA|109aa|down_1|NZ_CP015878.1_5406935_5407262_-	COG3628, COG3628, Phage baseplate assembly protein W [General function prediction only]	NA|67aa|down_2|NZ_CP015878.1_5407266_5407467_-	NA	NA|186aa|down_3|NZ_CP015878.1_5407522_5408080_-	COG4540, gpV, Phage P2 baseplate assembly protein gpV [General function prediction only]	NA|177aa|down_4|NZ_CP015878.1_5408076_5408607_-	NA	NA|219aa|down_5|NZ_CP015878.1_5408610_5409267_-	NA	NA|107aa|down_6|NZ_CP015878.1_5409263_5409584_-	NA	NA|84aa|down_7|NZ_CP015878.1_5409586_5409838_-	NA	NA|344aa|down_8|NZ_CP015878.1_5409839_5410871_-	pfam03864, Phage_cap_E, Phage major capsid protein E	NA|117aa|down_9|NZ_CP015878.1_5410884_5411235_-	pfam02924, HDPD, Bacteriophage lambda head decoration protein D
GCF_001654435.1_ASM165443v1	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	1	122376-122586	1	PILER-CR	no	DEDDh	DEDDh	Unclear	ACGTCGATGTTGCCGTTGTTGATGACATCGCC	32	0	0	NA	NA	NA	2	2	Orphan	PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	NA|98aa|up_7|NZ_CP015879.1_115800_116094_-,NA|142aa|up_6|NZ_CP015879.1_116095_116521_-,NA|128aa|up_5|NZ_CP015879.1_116716_117100_+,NA|59aa|up_3|NZ_CP015879.1_118308_118485_+,NA|176aa|up_2|NZ_CP015879.1_118514_119042_-,NA|99aa|up_1|NZ_CP015879.1_119074_119371_-,NA|979aa|down_0|NZ_CP015879.1_123449_126386_+,NA|236aa|down_6|NZ_CP015879.1_131647_132355_+,NA|326aa|down_7|NZ_CP015879.1_132382_133360_-,NA|101aa|down_8|NZ_CP015879.1_133509_133812_-,NA|206aa|down_9|NZ_CP015879.1_133907_134525_+	NA|423aa|up_9|NZ_CP015879.1_112804_114073_+	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain	NA|527aa|up_8|NZ_CP015879.1_114213_115794_+	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain	NA|98aa|up_7|NZ_CP015879.1_115800_116094_-	NA	NA|142aa|up_6|NZ_CP015879.1_116095_116521_-	NA	NA|128aa|up_5|NZ_CP015879.1_116716_117100_+	NA	NA|352aa|up_4|NZ_CP015879.1_117198_118254_+	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase)	NA|59aa|up_3|NZ_CP015879.1_118308_118485_+	NA	NA|176aa|up_2|NZ_CP015879.1_118514_119042_-	NA	NA|99aa|up_1|NZ_CP015879.1_119074_119371_-	NA	NA|282aa|up_0|NZ_CP015879.1_119397_120243_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|979aa|down_0|NZ_CP015879.1_123449_126386_+	NA	NA|126aa|down_1|NZ_CP015879.1_126410_126788_-	cd01716, Hfq, bacterial Hfq-like	NA|433aa|down_2|NZ_CP015879.1_127116_128415_-	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|143aa|down_3|NZ_CP015879.1_128375_128804_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|275aa|down_4|NZ_CP015879.1_129640_130465_-	pfam02369, Big_1, Bacterial Ig-like domain (group 1)	NA|287aa|down_5|NZ_CP015879.1_130616_131477_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|236aa|down_6|NZ_CP015879.1_131647_132355_+	NA	NA|326aa|down_7|NZ_CP015879.1_132382_133360_-	NA	NA|101aa|down_8|NZ_CP015879.1_133509_133812_-	NA	NA|206aa|down_9|NZ_CP015879.1_133907_134525_+	NA
GCF_001654435.1_ASM165443v1	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	2	330152-330242	1	CRISPRCasFinder	no		DEDDh	Orphan	TTCCCGGTTTAGCATGCGAAACTGG	25	0	0	NA	NA	NA	1	1	Orphan	PrimPol,cas6f,cas7f,cas5f,cas8f,cas3f,RT,DEDDh,DinG,cas3,csa3,WYL	NA|267aa|up_9|NZ_CP015879.1_318615_319416_+,NA|118aa|up_6|NZ_CP015879.1_322282_322636_+,NA|154aa|up_5|NZ_CP015879.1_322602_323064_-,NA|182aa|up_4|NZ_CP015879.1_323182_323728_+,NA|101aa|up_2|NZ_CP015879.1_324836_325139_+,NA|214aa|down_4|NZ_CP015879.1_336771_337413_+,NA|46aa|down_9|NZ_CP015879.1_342781_342919_+	NA|267aa|up_9|NZ_CP015879.1_318615_319416_+	NA	NA|369aa|up_8|NZ_CP015879.1_319586_320693_+	cd00140, beta_clamp, Beta clamp domain	NA|523aa|up_7|NZ_CP015879.1_320717_322286_+	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]	NA|118aa|up_6|NZ_CP015879.1_322282_322636_+	NA	NA|154aa|up_5|NZ_CP015879.1_322602_323064_-	NA	NA|182aa|up_4|NZ_CP015879.1_323182_323728_+	NA	NA|321aa|up_3|NZ_CP015879.1_323811_324774_+	pfam06834, TraU, TraU protein	NA|101aa|up_2|NZ_CP015879.1_324836_325139_+	NA	NA|346aa|up_1|NZ_CP015879.1_325176_326214_+	PRK09354, recA, recombinase A; Provisional	NA|311aa|up_0|NZ_CP015879.1_326259_327192_-	pfam01339, CheB_methylest, CheB methylesterase	NA|264aa|down_0|NZ_CP015879.1_332956_333748_-	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|675aa|down_1|NZ_CP015879.1_333744_335769_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|163aa|down_2|NZ_CP015879.1_335765_336254_-	smart00260, CheW, Two component signalling adaptor domain	NA|129aa|down_3|NZ_CP015879.1_336243_336630_-	pfam00072, Response_reg, Response regulator receiver domain	NA|214aa|down_4|NZ_CP015879.1_336771_337413_+	NA	NA|287aa|down_5|NZ_CP015879.1_337474_338335_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|481aa|down_6|NZ_CP015879.1_338454_339897_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|300aa|down_7|NZ_CP015879.1_340071_340971_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|400aa|down_8|NZ_CP015879.1_340970_342170_+	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein	NA|46aa|down_9|NZ_CP015879.1_342781_342919_+	NA
