assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001653435.1_ASM165343v1	NZ_CP011485	Helicobacter pylori strain ausabrJ05, complete genome	1	77032-77112	1	CRISPRCasFinder	no		cas3,cas4,cas2,DEDDh	Orphan	ACCGCTAGTAGCGAACCAACTCCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,cas2,DEDDh	NA|86aa|up_0|NZ_CP011485.1_76594_76852_+,NA	NA|200aa|up_9|NZ_CP011485.1_67357_67957_-	TIGR00101, Urease_accessory_protein_UreG, urease accessory protein UreG	NA|258aa|up_8|NZ_CP011485.1_67985_68759_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|171aa|up_7|NZ_CP011485.1_68770_69283_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|196aa|up_6|NZ_CP011485.1_69284_69872_-	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters	NA|570aa|up_5|NZ_CP011485.1_70064_71774_-	PRK13985, ureB, urease subunit alpha	NA|158aa|up_4|NZ_CP011485.1_72848_73322_-	PRK00376, lspA, lipoprotein signal peptidase	NA|446aa|up_3|NZ_CP011485.1_73315_74653_-	PRK14324, glmM, phosphoglucosamine mutase; Provisional	NA|90aa|up_2|NZ_CP011485.1_74741_75011_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|353aa|up_1|NZ_CP011485.1_75135_76194_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|86aa|up_0|NZ_CP011485.1_76594_76852_+	NA	NA|589aa|down_0|NZ_CP011485.1_78488_80255_+	PLN03213, PLN03213, repressor of silencing 3; Provisional	NA|674aa|down_1|NZ_CP011485.1_80381_82403_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|130aa|down_2|NZ_CP011485.1_82546_82936_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|142aa|down_3|NZ_CP011485.1_82932_83358_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|63aa|down_4|NZ_CP011485.1_83499_83688_-	pfam17402, DUF5408, Family of unknown function (DUF5408)	NA|451aa|down_5|NZ_CP011485.1_83694_85047_-	PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional	NA|455aa|down_6|NZ_CP011485.1_85100_86465_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|672aa|down_7|NZ_CP011485.1_86485_88501_-	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|232aa|down_8|NZ_CP011485.1_88785_89481_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|310aa|down_9|NZ_CP011485.1_89491_90421_-	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase
GCF_001653435.1_ASM165343v1	NZ_CP011485	Helicobacter pylori strain ausabrJ05, complete genome	2	320320-320401	2	CRISPRCasFinder	no		cas3,cas4,cas2,DEDDh	Orphan	TTGCGGTGTTTCTGCACTTTCTTGT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,cas2,DEDDh	NA|135aa|up_9|NZ_CP011485.1_311329_311734_+,NA|129aa|up_6|NZ_CP011485.1_313642_314029_+,NA	NA|135aa|up_9|NZ_CP011485.1_311329_311734_+	NA	NA|295aa|up_8|NZ_CP011485.1_311817_312702_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|294aa|up_7|NZ_CP011485.1_312714_313596_+	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|129aa|up_6|NZ_CP011485.1_313642_314029_+	NA	NA|322aa|up_5|NZ_CP011485.1_314028_314994_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|382aa|up_4|NZ_CP011485.1_314998_316144_-	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB	NA|252aa|up_3|NZ_CP011485.1_316605_317361_-	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family	NA|542aa|up_2|NZ_CP011485.1_317423_319049_-	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase	NA|80aa|up_1|NZ_CP011485.1_319051_319291_-	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|207aa|up_0|NZ_CP011485.1_319361_319982_-	TIGR03263, Guanylate_kinase, guanylate kinase	NA|181aa|down_0|NZ_CP011485.1_321525_322068_+	PRK13912, PRK13912, nuclease NucT; Provisional	NA|255aa|down_1|NZ_CP011485.1_322074_322839_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|238aa|down_2|NZ_CP011485.1_322941_323655_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|228aa|down_3|NZ_CP011485.1_323678_324362_+	TIGR03584, PseF, pseudaminic acid cytidylyltransferase	NA|298aa|down_4|NZ_CP011485.1_324331_325225_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|down_5|NZ_CP011485.1_325221_325764_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|down_6|NZ_CP011485.1_325696_326635_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|down_7|NZ_CP011485.1_326631_327414_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|down_8|NZ_CP011485.1_327662_328655_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|down_9|NZ_CP011485.1_328678_329485_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
GCF_001653435.1_ASM165343v1	NZ_CP011485	Helicobacter pylori strain ausabrJ05, complete genome	3	331786-331919	3	CRISPRCasFinder	no		cas3,cas4,cas2,DEDDh	Orphan	AGAAAGGCTCTCTAGCGTTACTGAAGAAATTATTTCAAAAAAAC	44	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,cas2,DEDDh	NA|102aa|up_0|NZ_CP011485.1_331101_331407_+,NA	NA|298aa|up_9|NZ_CP011485.1_324331_325225_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NZ_CP011485.1_325221_325764_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NZ_CP011485.1_325696_326635_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NZ_CP011485.1_326631_327414_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NZ_CP011485.1_327662_328655_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NZ_CP011485.1_328678_329485_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NZ_CP011485.1_329481_329715_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_2|NZ_CP011485.1_329726_330527_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_1|NZ_CP011485.1_330523_330928_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|102aa|up_0|NZ_CP011485.1_331101_331407_+	NA	NA|303aa|down_0|NZ_CP011485.1_332100_333009_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_1|NZ_CP011485.1_333008_334559_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_2|NZ_CP011485.1_334567_336184_-	PRK05380, pyrG, CTP synthetase; Validated	NA|221aa|down_3|NZ_CP011485.1_336444_337107_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_4|NZ_CP011485.1_337150_338854_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_5|NZ_CP011485.1_338871_339903_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|259aa|down_6|NZ_CP011485.1_339889_340666_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|619aa|down_7|NZ_CP011485.1_340662_342519_+	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|603aa|down_8|NZ_CP011485.1_342515_344324_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|310aa|down_9|NZ_CP011485.1_344332_345262_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)
GCF_001653435.1_ASM165343v1	NZ_CP011485	Helicobacter pylori strain ausabrJ05, complete genome	4	697092-697279	4	CRISPRCasFinder	no		cas3,cas4,cas2,DEDDh	Orphan	TTAGAAACCGAGACTAAAAGCGAAAAAAA	29	0	0	NA	NA	NA	2	2	Orphan	cas3,cas4,cas2,DEDDh	NA|136aa|up_7|NZ_CP011485.1_688376_688784_-,NA|151aa|up_0|NZ_CP011485.1_696457_696910_+,NA|513aa|down_0|NZ_CP011485.1_697443_698982_-	NA|469aa|up_9|NZ_CP011485.1_685641_687048_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|423aa|up_8|NZ_CP011485.1_687105_688374_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|136aa|up_7|NZ_CP011485.1_688376_688784_-	NA	NA|274aa|up_6|NZ_CP011485.1_688795_689617_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|561aa|up_5|NZ_CP011485.1_689613_691296_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|98aa|up_4|NZ_CP011485.1_691304_691598_-	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|440aa|up_3|NZ_CP011485.1_691594_692914_-	PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional	NA|417aa|up_2|NZ_CP011485.1_693788_695039_-	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]	NA|231aa|up_1|NZ_CP011485.1_695101_695794_+	TIGR00364, 7-cyano-7-deazaguanine_synthase, queuosine biosynthesis protein QueC	NA|151aa|up_0|NZ_CP011485.1_696457_696910_+	NA	NA|513aa|down_0|NZ_CP011485.1_697443_698982_-	NA	NA|179aa|down_1|NZ_CP011485.1_698983_699520_-	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group	NA|225aa|down_2|NZ_CP011485.1_699516_700191_-	COG1969, HyaC, Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]	NA|579aa|down_3|NZ_CP011485.1_700203_701940_-	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase	NA|387aa|down_4|NZ_CP011485.1_701949_703110_-	TIGR00391, small_subunit, hydrogenase (NiFe) small subunit (hydA)	NA|195aa|down_5|NZ_CP011485.1_703269_703854_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|687aa|down_6|NZ_CP011485.1_703915_705976_-	COG1479, COG1479, Uncharacterized conserved protein [Function unknown]	NA|353aa|down_7|NZ_CP011485.1_706165_707224_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|402aa|down_8|NZ_CP011485.1_707235_708441_-	COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]	NA|360aa|down_9|NZ_CP011485.1_708443_709523_-	pfam04551, GcpE, GcpE protein
GCF_001653435.1_ASM165343v1	NZ_CP011485	Helicobacter pylori strain ausabrJ05, complete genome	5	1337190-1337269	5	CRISPRCasFinder	no	DEDDh	cas3,cas4,cas2,DEDDh	Unclear	AGATTTGTTCTAATAACAATTCT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,cas2,DEDDh	NA|173aa|up_6|NZ_CP011485.1_1328258_1328777_-,NA|113aa|up_4|NZ_CP011485.1_1331203_1331542_-,NA|367aa|down_2|NZ_CP011485.1_1340859_1341960_+,NA|244aa|down_4|NZ_CP011485.1_1343278_1344010_-,NA|69aa|down_5|NZ_CP011485.1_1344912_1345119_-,NA|99aa|down_9|NZ_CP011485.1_1347999_1348296_-	NA|312aa|up_9|NZ_CP011485.1_1325229_1326165_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|309aa|up_8|NZ_CP011485.1_1326173_1327100_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|390aa|up_7|NZ_CP011485.1_1327099_1328269_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|173aa|up_6|NZ_CP011485.1_1328258_1328777_-	NA	NA|807aa|up_5|NZ_CP011485.1_1328773_1331194_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|113aa|up_4|NZ_CP011485.1_1331203_1331542_-	NA	NA|324aa|up_3|NZ_CP011485.1_1331551_1332523_-	PRK13022, secF, protein translocase subunit SecF	NA|526aa|up_2|NZ_CP011485.1_1332531_1334109_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|98aa|up_1|NZ_CP011485.1_1334108_1334402_-	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|439aa|up_0|NZ_CP011485.1_1334449_1335766_-	PRK14856, nhaA, sodium/proton antiporter NhaA	NA|265aa|down_0|NZ_CP011485.1_1338942_1339737_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|356aa|down_1|NZ_CP011485.1_1339736_1340804_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|367aa|down_2|NZ_CP011485.1_1340859_1341960_+	NA	NA|419aa|down_3|NZ_CP011485.1_1341949_1343206_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|244aa|down_4|NZ_CP011485.1_1343278_1344010_-	NA	NA|69aa|down_5|NZ_CP011485.1_1344912_1345119_-	NA	NA|291aa|down_6|NZ_CP011485.1_1345115_1345988_-	COG0158, Fbp, Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]	NA|218aa|down_7|NZ_CP011485.1_1346058_1346712_+	TIGR01163, Ribulose-phosphate_3-epimerase, ribulose-phosphate 3-epimerase	DEDDh|288aa|down_8|NZ_CP011485.1_1346689_1347553_+	PRK08517, PRK08517, 3'-5' exonuclease	NA|99aa|down_9|NZ_CP011485.1_1347999_1348296_-	NA
