assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001653415.1_ASM165341v1	NZ_CP011484	Helicobacter pylori strain CC33C, complete genome	1	457140-457244	1	CRISPRCasFinder	no		cas3,cas2,DEDDh,csx1,cas14j	Orphan	AAAAAAAGGATTTTAAGGCGTTCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,DEDDh,csx1,cas14j	NA|98aa|up_9|NZ_CP011484.1_449037_449331_-,NA|241aa|up_2|NZ_CP011484.1_454078_454801_+,NA	NA|98aa|up_9|NZ_CP011484.1_449037_449331_-	NA	NA|179aa|up_8|NZ_CP011484.1_449273_449810_-	pfam02527, GidB, rRNA small subunit methyltransferase G	NA|346aa|up_7|NZ_CP011484.1_449806_450844_-	TIGR00113, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA|250aa|up_6|NZ_CP011484.1_450844_451594_-	COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]	NA|151aa|up_5|NZ_CP011484.1_451586_452039_-	PRK04098, PRK04098, Sec-independent protein translocase subunit TatB	NA|337aa|up_4|NZ_CP011484.1_452106_453117_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|271aa|up_3|NZ_CP011484.1_453117_453930_-	TIGR00222, 3-methyl-2-oxobutanoate_hydroxymethyltransferase, 3-methyl-2-oxobutanoate hydroxymethyltransferase	NA|241aa|up_2|NZ_CP011484.1_454078_454801_+	NA	NA|281aa|up_1|NZ_CP011484.1_454790_455633_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|314aa|up_0|NZ_CP011484.1_455644_456586_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|217aa|down_0|NZ_CP011484.1_457854_458505_+	PRK00556, minC, septum formation inhibitor; Reviewed	NA|296aa|down_1|NZ_CP011484.1_458501_459389_+	TIGR00325, UDP-3-O-_N-acetylglucosamine_deacetylase, UDP-3-0-acyl N-acetylglucosamine deacetylase	NA|149aa|down_2|NZ_CP011484.1_459461_459908_+	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|294aa|down_3|NZ_CP011484.1_459961_460843_+	TIGR00191, Homoserine_kinase, homoserine kinase	NA|90aa|down_4|NZ_CP011484.1_460814_461084_+	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|950aa|down_5|NZ_CP011484.1_461080_463930_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|112aa|down_6|NZ_CP011484.1_463929_464265_+	TIGR00082, Ribosome-binding_factor_A, ribosome-binding factor A	NA|147aa|down_7|NZ_CP011484.1_464257_464698_+	COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown]	NA|371aa|down_8|NZ_CP011484.1_464858_465971_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|224aa|down_9|NZ_CP011484.1_466326_466998_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_001653415.1_ASM165341v1	NZ_CP011484	Helicobacter pylori strain CC33C, complete genome	2	994662-994799	2	CRISPRCasFinder	no		cas3,cas2,DEDDh,csx1,cas14j	Orphan	TTCAATCAAGGGACTTATCACTTTAAT	27	0	0	NA	NA	I-B	2	2	Orphan	cas3,cas2,DEDDh,csx1,cas14j	NA,NA|220aa|down_7|NZ_CP011484.1_1007562_1008222_+	NA|380aa|up_9|NZ_CP011484.1_975581_976721_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|677aa|up_8|NZ_CP011484.1_976724_978755_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|516aa|up_7|NZ_CP011484.1_979661_981209_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|531aa|up_6|NZ_CP011484.1_981230_982823_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NZ_CP011484.1_983594_985139_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|816aa|up_4|NZ_CP011484.1_985466_987914_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|144aa|up_3|NZ_CP011484.1_988171_988603_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NZ_CP011484.1_988607_991865_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP011484.1_991964_992657_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP011484.1_992802_993801_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|69aa|down_0|NZ_CP011484.1_1002291_1002498_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_1|NZ_CP011484.1_1002653_1003235_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_2|NZ_CP011484.1_1003231_1004377_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_3|NZ_CP011484.1_1004315_1005296_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_4|NZ_CP011484.1_1005296_1005839_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_5|NZ_CP011484.1_1005854_1006766_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_6|NZ_CP011484.1_1006762_1007566_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_7|NZ_CP011484.1_1007562_1008222_+	NA	NA|201aa|down_8|NZ_CP011484.1_1008225_1008828_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]	NA|252aa|down_9|NZ_CP011484.1_1008824_1009580_+	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
GCF_001653415.1_ASM165341v1	NZ_CP011484	Helicobacter pylori strain CC33C, complete genome	3	1178885-1178974	3	CRISPRCasFinder	no		cas3,cas2,DEDDh,csx1,cas14j	Orphan	CGCTTCAAGGCTTGCGGTTTTGTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,DEDDh,csx1,cas14j	NA|436aa|up_8|NZ_CP011484.1_1168706_1170014_+,NA|67aa|down_1|NZ_CP011484.1_1181053_1181254_+,NA|145aa|down_5|NZ_CP011484.1_1186224_1186659_-,NA|69aa|down_8|NZ_CP011484.1_1188162_1188369_-	NA|359aa|up_9|NZ_CP011484.1_1167561_1168638_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|436aa|up_8|NZ_CP011484.1_1168706_1170014_+	NA	NA|221aa|up_7|NZ_CP011484.1_1170020_1170683_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|up_6|NZ_CP011484.1_1170954_1171515_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|up_5|NZ_CP011484.1_1171530_1171923_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|up_4|NZ_CP011484.1_1171932_1173156_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|up_3|NZ_CP011484.1_1173168_1174113_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|up_2|NZ_CP011484.1_1174225_1175548_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|277aa|up_1|NZ_CP011484.1_1175845_1176676_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|up_0|NZ_CP011484.1_1176700_1178677_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|542aa|down_0|NZ_CP011484.1_1179459_1181085_-	pfam18809, PBECR1, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1	NA|67aa|down_1|NZ_CP011484.1_1181053_1181254_+	NA	NA|257aa|down_2|NZ_CP011484.1_1181498_1182269_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|568aa|down_3|NZ_CP011484.1_1182511_1184215_-	TIGR00066, Contains:_Gamma-glutamyltranspeptidase_large_chain, gamma-glutamyltranspeptidase	NA|607aa|down_4|NZ_CP011484.1_1184402_1186223_-	PRK08471, flgK, flagellar hook-associated protein FlgK; Validated	NA|145aa|down_5|NZ_CP011484.1_1186224_1186659_-	NA	NA|313aa|down_6|NZ_CP011484.1_1186790_1187729_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|77aa|down_7|NZ_CP011484.1_1187890_1188121_-	pfam04316, FlgM, Anti-sigma-28 factor, FlgM	NA|69aa|down_8|NZ_CP011484.1_1188162_1188369_-	NA	NA|186aa|down_9|NZ_CP011484.1_1188400_1188958_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
