assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001647755.1_ASM164775v1	NZ_CP015724	Salmonella enterica strain C629 chromosome, complete genome	1	586490-586590	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	GCTTCAGTGGCGAGCGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA|177aa|down_1|NZ_CP015724.1_588108_588639_-	NA|448aa|up_9|NZ_CP015724.1_572567_573911_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP015724.1_574538_574991_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP015724.1_575018_576521_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP015724.1_576545_579224_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP015724.1_579445_579847_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP015724.1_579846_580791_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP015724.1_580941_581211_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP015724.1_581452_583588_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP015724.1_583697_584582_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP015724.1_584687_584768_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP015724.1_586803_588048_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP015724.1_588108_588639_-	NA	NA|240aa|down_2|NZ_CP015724.1_588797_589517_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP015724.1_589494_590502_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP015724.1_590679_591576_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP015724.1_591566_592562_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP015724.1_592778_593303_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP015724.1_593296_593800_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP015724.1_593786_594104_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP015724.1_594141_594585_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_001647755.1_ASM164775v1	NZ_CP015724	Salmonella enterica strain C629 chromosome, complete genome	2	962416-963482	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|179aa|up_9|NZ_CP015724.1_950959_951496_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP015724.1_951492_951963_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP015724.1_951977_952484_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP015724.1_952503_953277_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP015724.1_953289_955989_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP015724.1_956068_956656_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP015724.1_957265_958066_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP015724.1_958293_959931_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP015724.1_960013_961312_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP015724.1_961447_962119_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP015724.1_963579_964377_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP015724.1_964464_964827_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP015724.1_965250_967050_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP015724.1_967049_968762_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP015724.1_968837_969572_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP015724.1_969659_970613_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP015724.1_970993_973693_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP015724.1_974050_975586_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP015724.1_975602_976205_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP015724.1_976227_977286_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_001647755.1_ASM164775v1	NZ_CP015724	Salmonella enterica strain C629 chromosome, complete genome	3	980023-981086	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	27,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|245aa|up_9|NZ_CP015724.1_968837_969572_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP015724.1_969659_970613_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP015724.1_970993_973693_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP015724.1_974050_975586_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP015724.1_975602_976205_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP015724.1_976227_977286_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP015724.1_977295_978021_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP015724.1_978020_978725_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP015724.1_978724_979642_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP015724.1_979644_979938_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP015724.1_981100_982147_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP015724.1_982397_983306_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP015724.1_983315_984755_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP015724.1_984741_985347_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP015724.1_985397_985721_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP015724.1_985911_986223_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP015724.1_986241_986952_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP015724.1_986951_987431_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP015724.1_987427_988477_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP015724.1_988457_989219_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001647755.1_ASM164775v1	NZ_CP015724	Salmonella enterica strain C629 chromosome, complete genome	4	3626832-3626914	4	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	TGGACACTGGCTGGACATCGGCTGGACA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA|82aa|up_2|NZ_CP015724.1_3623966_3624212_-,NA|100aa|up_1|NZ_CP015724.1_3624696_3624996_-,NA|49aa|down_0|NZ_CP015724.1_3627310_3627457_-,NA|159aa|down_4|NZ_CP015724.1_3629249_3629726_+,NA|202aa|down_5|NZ_CP015724.1_3630348_3630954_+,NA|53aa|down_6|NZ_CP015724.1_3631344_3631503_+,NA|95aa|down_9|NZ_CP015724.1_3632719_3633004_+	NA|108aa|up_9|NZ_CP015724.1_3619121_3619445_-	TIGR01594, Uncharacterized_protein_HI_1416, phage holin, lambda family	NA|230aa|up_8|NZ_CP015724.1_3620088_3620778_-	pfam06323, Phage_antiter_Q, Phage antitermination protein Q	NA|198aa|up_7|NZ_CP015724.1_3620887_3621481_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|57aa|up_6|NZ_CP015724.1_3621473_3621644_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|150aa|up_5|NZ_CP015724.1_3621636_3622086_-	pfam05772, NinB, NinB protein	NA|141aa|up_4|NZ_CP015724.1_3623012_3623435_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|178aa|up_3|NZ_CP015724.1_3623436_3623970_-	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|82aa|up_2|NZ_CP015724.1_3623966_3624212_-	NA	NA|100aa|up_1|NZ_CP015724.1_3624696_3624996_-	NA	NA|478aa|up_0|NZ_CP015724.1_3624995_3626429_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|49aa|down_0|NZ_CP015724.1_3627310_3627457_-	NA	NA|189aa|down_1|NZ_CP015724.1_3627546_3628113_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|84aa|down_2|NZ_CP015724.1_3628142_3628394_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|231aa|down_3|NZ_CP015724.1_3628521_3629214_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|159aa|down_4|NZ_CP015724.1_3629249_3629726_+	NA	NA|202aa|down_5|NZ_CP015724.1_3630348_3630954_+	NA	NA|53aa|down_6|NZ_CP015724.1_3631344_3631503_+	NA	NA|68aa|down_7|NZ_CP015724.1_3631499_3631703_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|313aa|down_8|NZ_CP015724.1_3631773_3632712_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|95aa|down_9|NZ_CP015724.1_3632719_3633004_+	NA
